RNA–Protein interactions for RNA: ENST00000466159.6

SYNE1-217, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 2,610 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-217ENST00000466159 ATP2B2Q01814 1243 aa10.02□□□□□ -0.81
SYNE1-217ENST00000466159 ZNF543Q08ER8 600 aa10.02□□□□□ -0.81
SYNE1-217ENST00000466159 UBE2SQ16763 222 aa10.02□□□□□ -0.81
SYNE1-217ENST00000466159 CDC42EP5Q6NZY7 148 aa10.02□□□□□ -0.81
SYNE1-217ENST00000466159 TMC4Q7Z404 712 aa10.02□□□□□ -0.81
SYNE1-217ENST00000466159 ADGRF4Q8IZF3 695 aa10.02□□□□□ -0.81
SYNE1-217ENST00000466159 KRT222Q8N1A0 295 aa10.02□□□□□ -0.81
SYNE1-217ENST00000466159 CALML4Q96GE6 196 aa10.02□□□□□ -0.81
SYNE1-217ENST00000466159 TUBGCP2Q9BSJ2 902 aa10.02□□□□□ -0.81
SYNE1-217ENST00000466159 QTRT2Q9H974 415 aaKnown RBP10.02□□□□□ -0.81
SYNE1-217ENST00000466159 BLOC1S4Q9NUP1 217 aa10.02□□□□□ -0.81
SYNE1-217ENST00000466159 LRWD1Q9UFC0 647 aa10.02□□□□□ -0.81
SYNE1-217ENST00000466159 FHOD1Q9Y613 1164 aa10.02□□□□□ -0.81
SYNE1-217ENST00000466159 POTEMA6NI47 508 aa10.02□□□□□ -0.81
SYNE1-217ENST00000466159 CCNE1P24864 410 aa10.02□□□□□ -0.81
SYNE1-217ENST00000466159 ARHGAP25P42331 645 aa10.02□□□□□ -0.81
SYNE1-217ENST00000466159 DMTNQ08495 405 aa10.02□□□□□ -0.81
SYNE1-217ENST00000466159 NFIAQ12857 509 aa10.02□□□□□ -0.81
SYNE1-217ENST00000466159 SEMA3FQ13275 785 aa10.02□□□□□ -0.81
SYNE1-217ENST00000466159 MCM6Q14566 821 aa10.02□□□□□ -0.81
SYNE1-217ENST00000466159 RSRC2Q7L4I2 434 aaKnown RBP10.02□□□□□ -0.81
SYNE1-217ENST00000466159 SLC35F6Q8N357 371 aa10.02□□□□□ -0.81
SYNE1-217ENST00000466159 KIAA0895Q8NCT3 520 aa10.02□□□□□ -0.81
SYNE1-217ENST00000466159 CCDC47Q96A33 483 aaKnown RBP10.02□□□□□ -0.81
SYNE1-217ENST00000466159 PNMA5Q96PV4 448 aa10.02□□□□□ -0.81
SYNE1-217ENST00000466159 NUDT12Q9BQG2 462 aa10.02□□□□□ -0.81
SYNE1-217ENST00000466159 SLC39A2Q9NP94 309 aa10.02□□□□□ -0.81
SYNE1-217ENST00000466159 KCNQ5Q9NR82 932 aa10.02□□□□□ -0.81
SYNE1-217ENST00000466159 SUGT1Q9Y2Z0 365 aa10.02□□□□□ -0.81
SYNE1-217ENST00000466159 LUC7L2Q9Y383 392 aaKnown RBP10.02□□□□□ -0.81
SYNE1-217ENST00000466159 A0A1W2PQC6 194 aa10.01□□□□□ -0.81
SYNE1-217ENST00000466159 hCG_1984214I3L0E3 225 aa10.01□□□□□ -0.81
SYNE1-217ENST00000466159 MPHOSPH10O00566 681 aaKnown RBP10.01□□□□□ -0.81
SYNE1-217ENST00000466159 SEC31AO94979 1220 aaKnown RBP10.01□□□□□ -0.81
SYNE1-217ENST00000466159 TFRCP02786 760 aaKnown RBP10.01□□□□□ -0.81
SYNE1-217ENST00000466159 HSPA1LP34931 641 aa10.01□□□□□ -0.81
SYNE1-217ENST00000466159 TNNI2P48788 182 aa10.01□□□□□ -0.81
SYNE1-217ENST00000466159 KLK7P49862 253 aa10.01□□□□□ -0.81
SYNE1-217ENST00000466159 AMPD3Q01432 767 aa10.01□□□□□ -0.81
SYNE1-217ENST00000466159 APOBEC3HQ6NTF7 200 aaKnown RBP10.01□□□□□ -0.81
SYNE1-217ENST00000466159 KCTD1Q719H9 257 aa10.01□□□□□ -0.81
SYNE1-217ENST00000466159 DYMQ7RTS9 669 aa10.01□□□□□ -0.81
SYNE1-217ENST00000466159 ZFPM1Q8IX07 1006 aa10.01□□□□□ -0.81
SYNE1-217ENST00000466159 ZNF713Q8N859 430 aaPredicted RBP10.01□□□□□ -0.81
SYNE1-217ENST00000466159 OR8K1Q8NGG5 319 aa10.01□□□□□ -0.81
SYNE1-217ENST00000466159 GJA10Q969M2 543 aa10.01□□□□□ -0.81
SYNE1-217ENST00000466159 ST7Q9NRC1 585 aa10.01□□□□□ -0.81
SYNE1-217ENST00000466159 REXO2Q9Y3B8 237 aaKnown RBP10.01□□□□□ -0.81
SYNE1-217ENST00000466159 EPN1Q9Y6I3 576 aaPredicted RBP10.01□□□□□ -0.81
SYNE1-217ENST00000466159 PNMA6FA0A0J9YX94 578 aa10.01□□□□□ -0.81
SYNE1-217ENST00000466159 BICDL2A1A5D9 508 aa10.01□□□□□ -0.81
SYNE1-217ENST00000466159 MYMKA6NI61 221 aa10.01□□□□□ -0.81
SYNE1-217ENST00000466159 RASSF10A6NK89 507 aa10.01□□□□□ -0.81
SYNE1-217ENST00000466159 DNM2P50570 870 aa10.01□□□□□ -0.81
SYNE1-217ENST00000466159 FXR2P51116 673 aaKnown RBP eCLIP10.01□□□□□ -0.81
SYNE1-217ENST00000466159 ORC2Q13416 577 aaPredicted RBP10.01□□□□□ -0.81
SYNE1-217ENST00000466159 BMS1Q14692 1282 aaKnown RBP10.01□□□□□ -0.81
SYNE1-217ENST00000466159 KIF4BQ2VIQ3 1234 aa10.01□□□□□ -0.81
SYNE1-217ENST00000466159 WDR59Q6PJI9 974 aa10.01□□□□□ -0.81
SYNE1-217ENST00000466159 TMCO3Q6UWJ1 677 aa10.01□□□□□ -0.81
SYNE1-217ENST00000466159 SV2BQ7L1I2 683 aa10.01□□□□□ -0.81
SYNE1-217ENST00000466159 CNOT6LQ96LI5 555 aaKnown RBP10.01□□□□□ -0.81
SYNE1-217ENST00000466159 SEMA6BQ9H3T3 888 aa10.01□□□□□ -0.81
SYNE1-217ENST00000466159 AGPAT5Q9NUQ2 364 aa10.01□□□□□ -0.81
SYNE1-217ENST00000466159 ARGLU1Q9NWB6 273 aaPredicted RBP10.01□□□□□ -0.81
SYNE1-217ENST00000466159 TRIM10Q9UDY6 481 aa10.01□□□□□ -0.81
SYNE1-217ENST00000466159 SWAP70Q9UH65 585 aa10.01□□□□□ -0.81
SYNE1-217ENST00000466159 PUF60Q9UHX1 559 aaKnown RBP10.01□□□□□ -0.81
SYNE1-217ENST00000466159 CAPN11Q9UMQ6 739 aa10.01□□□□□ -0.81
SYNE1-217ENST00000466159 PCDHAC2Q9Y5I4 1007 aa10.01□□□□□ -0.81
SYNE1-217ENST00000466159 FAM196BA6NMK8 535 aa10□□□□□ -0.81
SYNE1-217ENST00000466159 USP17L10C9JJH3 530 aa10□□□□□ -0.81
SYNE1-217ENST00000466159 G3V3G9 751 aa10□□□□□ -0.81
SYNE1-217ENST00000466159 ZRANB2O95218 330 aaKnown RBP eCLIP10□□□□□ -0.81
SYNE1-217ENST00000466159 NDUFA10O95299 355 aa10□□□□□ -0.81
SYNE1-217ENST00000466159 PNMA6AP0CW24 399 aaPredicted RBP10□□□□□ -0.81
SYNE1-217ENST00000466159 CACNB3P54284 484 aa10□□□□□ -0.81
SYNE1-217ENST00000466159 TBC1D8BQ0IIM8 1120 aa10□□□□□ -0.81
SYNE1-217ENST00000466159 CCDC96Q2M329 555 aa10□□□□□ -0.81
SYNE1-217ENST00000466159 SHROOM1Q2M3G4 852 aaPredicted RBP10□□□□□ -0.81
SYNE1-217ENST00000466159 DCAF8Q5TAQ9 597 aa10□□□□□ -0.81
SYNE1-217ENST00000466159 KRT27Q7Z3Y8 459 aa10□□□□□ -0.81
SYNE1-217ENST00000466159 GPR161Q8N6U8 529 aaKnown RBP10□□□□□ -0.81
SYNE1-217ENST00000466159 NOC3LQ8WTT2 800 aaKnown RBP10□□□□□ -0.81
SYNE1-217ENST00000466159 UIMC1Q96RL1 719 aa10□□□□□ -0.81
SYNE1-217ENST00000466159 DNAJC7Q99615 494 aa10□□□□□ -0.81
SYNE1-217ENST00000466159 RIC8AQ9NPQ8 531 aa10□□□□□ -0.81
SYNE1-217ENST00000466159 CDC23Q9UJX2 597 aa10□□□□□ -0.81
SYNE1-217ENST00000466159 TFR2Q9UP52 801 aa10□□□□□ -0.81
SYNE1-217ENST00000466159 MYH4Q9Y623 1939 aa10□□□□□ -0.81
SYNE1-217ENST00000466159 CTAGE9A4FU28 777 aa10□□□□□ -0.81
SYNE1-217ENST00000466159 RAD21O60216 631 aa10□□□□□ -0.81
SYNE1-217ENST00000466159 MTIF2P46199 727 aaKnown RBP10□□□□□ -0.81
SYNE1-217ENST00000466159 TMEM266Q2M3C6 531 aa10□□□□□ -0.81
SYNE1-217ENST00000466159 MIIPQ5JXC2 388 aa10□□□□□ -0.81
SYNE1-217ENST00000466159 CNNM4Q6P4Q7 775 aa10□□□□□ -0.81
SYNE1-217ENST00000466159 KCNK18Q7Z418 384 aa10□□□□□ -0.81
SYNE1-217ENST00000466159 COL23A1Q86Y22 540 aaPredicted RBP10□□□□□ -0.81
SYNE1-217ENST00000466159 LARP4BQ92615 738 aaKnown RBP10□□□□□ -0.81
SYNE1-217ENST00000466159 GOLGA1Q92805 767 aa10□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms