RNA–Protein interactions for RNA: ENST00000463818.1

SF3A1-205, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 583 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-205ENST00000463818 ZEB2O60315 1214 aa22.06■■□□□ 1.12
SF3A1-205ENST00000463818 TIMP1P01033 207 aa22.06■■□□□ 1.12
SF3A1-205ENST00000463818 CHMLP26374 656 aa22.06■■□□□ 1.12
SF3A1-205ENST00000463818 USH1GQ495M9 461 aa22.06■■□□□ 1.12
SF3A1-205ENST00000463818 FAM109BQ6ICB4 259 aaPredicted RBP22.06■■□□□ 1.12
SF3A1-205ENST00000463818 ADGRF4Q8IZF3 695 aa22.06■■□□□ 1.12
SF3A1-205ENST00000463818 RUFY2Q8WXA3 655 aa22.06■■□□□ 1.12
SF3A1-205ENST00000463818 UBAC1Q9BSL1 405 aa22.06■■□□□ 1.12
SF3A1-205ENST00000463818 TBX21Q9UL17 535 aa22.06■■□□□ 1.12
SF3A1-205ENST00000463818 MCM3APO60318 1980 aa22.06■■□□□ 1.12
SF3A1-205ENST00000463818 CABYRO75952 493 aa22.05■■□□□ 1.12
SF3A1-205ENST00000463818 FPGSQ05932 587 aa22.05■■□□□ 1.12
SF3A1-205ENST00000463818 DUSP28Q4G0W2 176 aa22.05■■□□□ 1.12
SF3A1-205ENST00000463818 ASPRV1Q53RT3 343 aa22.05■■□□□ 1.12
SF3A1-205ENST00000463818 RGS22Q8NE09 1264 aa22.05■■□□□ 1.12
SF3A1-205ENST00000463818 WDR11Q9BZH6 1224 aa22.05■■□□□ 1.12
SF3A1-205ENST00000463818 VAT1LQ9HCJ6 419 aa22.05■■□□□ 1.12
SF3A1-205ENST00000463818 RBM47A0AV96 593 aaKnown RBP22.04■■□□□ 1.12
SF3A1-205ENST00000463818 PARP1P09874 1014 aaKnown RBP22.04■■□□□ 1.12
SF3A1-205ENST00000463818 PTH1RQ03431 593 aa22.04■■□□□ 1.12
SF3A1-205ENST00000463818 CDC37Q16543 378 aaPredicted RBP22.04■■□□□ 1.12
SF3A1-205ENST00000463818 SLC43A3Q8NBI5 491 aa22.04■■□□□ 1.12
SF3A1-205ENST00000463818 TBC1D5Q92609 795 aa22.04■■□□□ 1.12
SF3A1-205ENST00000463818 RAD50Q92878 1312 aa22.04■■□□□ 1.12
SF3A1-205ENST00000463818 TLR3O15455 904 aaKnown RBP22.03■■□□□ 1.12
SF3A1-205ENST00000463818 PDE4DQ08499 809 aa22.03■■□□□ 1.12
SF3A1-205ENST00000463818 IFIT1BQ5T764 474 aaKnown RBP22.03■■□□□ 1.12
SF3A1-205ENST00000463818 CYB5R4Q7L1T6 521 aa22.03■■□□□ 1.12
SF3A1-205ENST00000463818 FAM126BQ8IXS8 530 aa22.03■■□□□ 1.12
SF3A1-205ENST00000463818 DNERQ8NFT8 737 aa22.03■■□□□ 1.12
SF3A1-205ENST00000463818 MPHOSPH6Q99547 160 aaKnown RBP22.03■■□□□ 1.12
SF3A1-205ENST00000463818 DHX16O60231 1041 aaKnown RBP22.02■■□□□ 1.12
SF3A1-205ENST00000463818 ITGA7Q13683 1181 aa22.02■■□□□ 1.12
SF3A1-205ENST00000463818 SEC23AQ15436 765 aa22.02■■□□□ 1.12
SF3A1-205ENST00000463818 MFSD5Q6N075 450 aa22.02■■□□□ 1.12
SF3A1-205ENST00000463818 RNPC3Q96LT9 517 aaKnown RBP22.02■■□□□ 1.12
SF3A1-205ENST00000463818 FAM161BQ96MY7 647 aa22.02■■□□□ 1.12
SF3A1-205ENST00000463818 JMJD4Q9H9V9 463 aa22.02■■□□□ 1.12
SF3A1-205ENST00000463818 STXBP5LQ9Y2K9 1186 aa22.02■■□□□ 1.12
SF3A1-205ENST00000463818 U3KPZ7 1027 aaPredicted RBP22.02■■□□□ 1.12
SF3A1-205ENST00000463818 GRIN2DO15399 1336 aa22.02■■□□□ 1.12
SF3A1-205ENST00000463818 LTBP2Q14767 1821 aa22.01■■□□□ 1.11
SF3A1-205ENST00000463818 B4DLN1 442 aa22.01■■□□□ 1.11
SF3A1-205ENST00000463818 CD4P01730 458 aa22.01■■□□□ 1.11
SF3A1-205ENST00000463818 CYP21A2P08686 494 aa22.01■■□□□ 1.11
SF3A1-205ENST00000463818 EDNRBP24530 442 aa22.01■■□□□ 1.11
SF3A1-205ENST00000463818 MRPL12P52815 198 aaKnown RBP22.01■■□□□ 1.11
SF3A1-205ENST00000463818 TRDNQ13061 729 aa22.01■■□□□ 1.11
SF3A1-205ENST00000463818 QRICH1Q2TAL8 776 aa22.01■■□□□ 1.11
SF3A1-205ENST00000463818 STAG2Q8N3U4 1231 aa22.01■■□□□ 1.11
SF3A1-205ENST00000463818 SLC17A8Q8NDX2 589 aa22.01■■□□□ 1.11
SF3A1-205ENST00000463818 ABCB11O95342 1321 aa22.01■■□□□ 1.11
SF3A1-205ENST00000463818 PSMC6P62333 389 aa22■■□□□ 1.11
SF3A1-205ENST00000463818 SMAD3P84022 425 aaKnown RBP22■■□□□ 1.11
SF3A1-205ENST00000463818 ZNF697Q5TEC3 545 aa22■■□□□ 1.11
SF3A1-205ENST00000463818 FBXO11Q86XK2 927 aa22■■□□□ 1.11
SF3A1-205ENST00000463818 SYTL5Q8TDW5 730 aaPredicted RBP22■■□□□ 1.11
SF3A1-205ENST00000463818 SEZ6LQ9BYH1 1024 aa22■■□□□ 1.11
SF3A1-205ENST00000463818 PPP1R12CQ9BZL4 782 aa22■■□□□ 1.11
SF3A1-205ENST00000463818 MAF1Q9H063 256 aa22■■□□□ 1.11
SF3A1-205ENST00000463818 MRPL11Q9Y3B7 192 aaKnown RBP22■■□□□ 1.11
SF3A1-205ENST00000463818 SGSM2O43147 1006 aa21.99■■□□□ 1.11
SF3A1-205ENST00000463818 PPIGQ13427 754 aaKnown RBP eCLIP21.99■■□□□ 1.11
SF3A1-205ENST00000463818 C16orf59Q7L2K0 433 aa21.99■■□□□ 1.11
SF3A1-205ENST00000463818 MCF2L2Q86YR7 1114 aa21.99■■□□□ 1.11
SF3A1-205ENST00000463818 OR6J1Q8NGC5 347 aa21.99■■□□□ 1.11
SF3A1-205ENST00000463818 TAAR1Q96RJ0 339 aa21.99■■□□□ 1.11
SF3A1-205ENST00000463818 KLRF2D3W0D1 207 aa21.98■■□□□ 1.11
SF3A1-205ENST00000463818 CSF2RAP15509 400 aa21.98■■□□□ 1.11
SF3A1-205ENST00000463818 CYP2C18P33260 490 aa21.98■■□□□ 1.11
SF3A1-205ENST00000463818 TMEM199Q8N511 208 aa21.98■■□□□ 1.11
SF3A1-205ENST00000463818 SCFD2Q8WU76 684 aa21.98■■□□□ 1.11
SF3A1-205ENST00000463818 GUCD1Q96NT3 240 aa21.98■■□□□ 1.11
SF3A1-205ENST00000463818 TRPV6Q9H1D0 765 aa21.98■■□□□ 1.11
SF3A1-205ENST00000463818 SEMA6BQ9H3T3 888 aa21.98■■□□□ 1.11
SF3A1-205ENST00000463818 POLR3EQ9NVU0 708 aa21.98■■□□□ 1.11
SF3A1-205ENST00000463818 MAD2L2Q9UI95 211 aa21.98■■□□□ 1.11
SF3A1-205ENST00000463818 E7EWF7 191 aa21.97■■□□□ 1.11
SF3A1-205ENST00000463818 IFIT3O14879 490 aaKnown RBP21.97■■□□□ 1.11
SF3A1-205ENST00000463818 NKRFO15226 690 aaKnown RBP eCLIP21.97■■□□□ 1.11
SF3A1-205ENST00000463818 MYL3P08590 195 aa21.97■■□□□ 1.11
SF3A1-205ENST00000463818 CPT1AP50416 773 aa21.97■■□□□ 1.11
SF3A1-205ENST00000463818 PPP2R5BQ15173 497 aa21.97■■□□□ 1.11
SF3A1-205ENST00000463818 NSUN6Q8TEA1 469 aaKnown RBP21.97■■□□□ 1.11
SF3A1-205ENST00000463818 COPS5Q92905 334 aa21.97■■□□□ 1.11
SF3A1-205ENST00000463818 BUD13Q9BRD0 619 aaKnown RBP eCLIP21.97■■□□□ 1.11
SF3A1-205ENST00000463818 COL20A1Q9P218 1284 aa21.97■■□□□ 1.11
SF3A1-205ENST00000463818 TAF6LQ9Y6J9 622 aa21.97■■□□□ 1.11
SF3A1-205ENST00000463818 PALM3A6NDB9 673 aaPredicted RBP21.96■■□□□ 1.11
SF3A1-205ENST00000463818 TXNP10599 105 aaKnown RBP21.96■■□□□ 1.11
SF3A1-205ENST00000463818 PURAQ00577 322 aaKnown RBP21.96■■□□□ 1.11
SF3A1-205ENST00000463818 BRDTQ58F21 947 aaPredicted RBP21.96■■□□□ 1.11
SF3A1-205ENST00000463818 TMEM240Q5SV17 173 aa21.96■■□□□ 1.11
SF3A1-205ENST00000463818 MAP4K1Q92918 833 aa21.96■■□□□ 1.11
SF3A1-205ENST00000463818 AMNQ9BXJ7 453 aa21.96■■□□□ 1.11
SF3A1-205ENST00000463818 GPHNQ9NQX3 736 aaPredicted RBP21.96■■□□□ 1.11
SF3A1-205ENST00000463818 HSFX4A0A1B0GTS1 333 aaPredicted RBP21.95■■□□□ 1.1
SF3A1-205ENST00000463818 HSFX3A0A1B0GWH4 333 aaPredicted RBP21.95■■□□□ 1.1
SF3A1-205ENST00000463818 B4GALT4O60513 344 aa21.95■■□□□ 1.1
SF3A1-205ENST00000463818 ACRP10323 421 aa21.95■■□□□ 1.1
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms