RNA–Protein interactions for RNA: ENST00000463487.1

COL9A3-204, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 5

Gene COL9A3, Length 760 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-204ENST00000463487 RPS6P62753 249 aaKnown RBP22.83■■□□□ 1.25
COL9A3-204ENST00000463487 SSRP1Q08945 709 aaKnown RBP22.83■■□□□ 1.25
COL9A3-204ENST00000463487 PWP2Q15269 919 aaKnown RBP22.83■■□□□ 1.25
COL9A3-204ENST00000463487 PPP1R18Q6NYC8 613 aa22.83■■□□□ 1.25
COL9A3-204ENST00000463487 FAM133AQ8N9E0 248 aa22.83■■□□□ 1.25
COL9A3-204ENST00000463487 CUL5Q93034 780 aa22.83■■□□□ 1.25
COL9A3-204ENST00000463487 ZSCAN31Q96LW9 406 aaPredicted RBP22.83■■□□□ 1.25
COL9A3-204ENST00000463487 SYNGAP1Q96PV0 1343 aa22.82■■□□□ 1.24
COL9A3-204ENST00000463487 PRPF3O43395 683 aaKnown RBP22.82■■□□□ 1.24
COL9A3-204ENST00000463487 TEX2Q8IWB9 1127 aa22.82■■□□□ 1.24
COL9A3-204ENST00000463487 DNERQ8NFT8 737 aa22.82■■□□□ 1.24
COL9A3-204ENST00000463487 CCDC12Q8WUD4 166 aaPredicted RBP22.82■■□□□ 1.24
COL9A3-204ENST00000463487 TINF2Q9BSI4 451 aa22.82■■□□□ 1.24
COL9A3-204ENST00000463487 TMEM106CQ9BVX2 250 aa22.82■■□□□ 1.24
COL9A3-204ENST00000463487 SLC26A6Q9BXS9 759 aa22.82■■□□□ 1.24
COL9A3-204ENST00000463487 HMX1Q9NP08 348 aaPredicted RBP22.82■■□□□ 1.24
COL9A3-204ENST00000463487 CNPY2Q9Y2B0 182 aa22.82■■□□□ 1.24
COL9A3-204ENST00000463487 SMCHD1A6NHR9 2005 aa22.81■■□□□ 1.24
COL9A3-204ENST00000463487 hCG_1642624A0A1W2PR95 340 aa22.81■■□□□ 1.24
COL9A3-204ENST00000463487 GCOM1H8Y6P7 765 aaPredicted RBP22.81■■□□□ 1.24
COL9A3-204ENST00000463487 POLR2MP0CAP2 368 aa22.81■■□□□ 1.24
COL9A3-204ENST00000463487 SCG2P13521 617 aa22.81■■□□□ 1.24
COL9A3-204ENST00000463487 PRKAR2AP13861 404 aaKnown RBP22.81■■□□□ 1.24
COL9A3-204ENST00000463487 MCM2P49736 904 aa22.81■■□□□ 1.24
COL9A3-204ENST00000463487 NAPAP54920 295 aa22.81■■□□□ 1.24
COL9A3-204ENST00000463487 CNTN2Q02246 1040 aa22.81■■□□□ 1.24
COL9A3-204ENST00000463487 SCRN1Q12765 414 aa22.81■■□□□ 1.24
COL9A3-204ENST00000463487 PFKFB3Q16875 520 aaPredicted RBP22.81■■□□□ 1.24
COL9A3-204ENST00000463487 MAMDC4Q6UXC1 1216 aa22.81■■□□□ 1.24
COL9A3-204ENST00000463487 SLC30A10Q6XR72 485 aa22.81■■□□□ 1.24
COL9A3-204ENST00000463487 SH2B1Q9NRF2 756 aaPredicted RBP22.81■■□□□ 1.24
COL9A3-204ENST00000463487 FLRT1Q9NZU1 646 aa22.81■■□□□ 1.24
COL9A3-204ENST00000463487 NRBP1Q9UHY1 535 aa22.81■■□□□ 1.24
COL9A3-204ENST00000463487 RPTORQ8N122 1335 aa22.81■■□□□ 1.24
COL9A3-204ENST00000463487 CYP2C19P33261 490 aa22.8■■□□□ 1.24
COL9A3-204ENST00000463487 GHRHRQ02643 423 aa22.8■■□□□ 1.24
COL9A3-204ENST00000463487 NTRK3Q16288 839 aa22.8■■□□□ 1.24
COL9A3-204ENST00000463487 PHKBQ93100 1093 aa22.8■■□□□ 1.24
COL9A3-204ENST00000463487 GLT8D2Q9H1C3 349 aa22.8■■□□□ 1.24
COL9A3-204ENST00000463487 CCL5P13501 91 aa22.79■■□□□ 1.24
COL9A3-204ENST00000463487 HSD17B4P51659 736 aa22.79■■□□□ 1.24
COL9A3-204ENST00000463487 ME3Q16798 604 aa22.79■■□□□ 1.24
COL9A3-204ENST00000463487 MAP3K21Q5TCX8 1036 aa22.79■■□□□ 1.24
COL9A3-204ENST00000463487 SMARCC2Q8TAQ2 1214 aa22.79■■□□□ 1.24
COL9A3-204ENST00000463487 GTF3C6Q969F1 213 aa22.79■■□□□ 1.24
COL9A3-204ENST00000463487 RNF208Q9H0X6 261 aa22.79■■□□□ 1.24
COL9A3-204ENST00000463487 PSTPIP2Q9H939 334 aa22.79■■□□□ 1.24
COL9A3-204ENST00000463487 BARHL2Q9NY43 387 aa22.79■■□□□ 1.24
COL9A3-204ENST00000463487 CCDC85CA6NKD9 419 aa22.78■■□□□ 1.24
COL9A3-204ENST00000463487 DEXIO95424 95 aa22.78■■□□□ 1.24
COL9A3-204ENST00000463487 ALDH5A1P51649 535 aaPredicted RBP22.78■■□□□ 1.24
COL9A3-204ENST00000463487 CACNB2Q08289 660 aaPredicted RBP22.78■■□□□ 1.24
COL9A3-204ENST00000463487 WWC2Q6AWC2 1192 aa22.78■■□□□ 1.24
COL9A3-204ENST00000463487 CCDC148Q8NFR7 591 aa22.78■■□□□ 1.24
COL9A3-204ENST00000463487 SYTL5Q8TDW5 730 aaPredicted RBP22.78■■□□□ 1.24
COL9A3-204ENST00000463487 NSUN6Q8TEA1 469 aaKnown RBP22.78■■□□□ 1.24
COL9A3-204ENST00000463487 GPKOWQ92917 476 aaPredicted RBP eCLIP22.78■■□□□ 1.24
COL9A3-204ENST00000463487 SOWAHBA6NEL2 793 aa22.77■■□□□ 1.24
COL9A3-204ENST00000463487 OPLAHO14841 1288 aa22.77■■□□□ 1.24
COL9A3-204ENST00000463487 MSCO60682 206 aa22.77■■□□□ 1.24
COL9A3-204ENST00000463487 MYCP01106 439 aaPredicted RBP22.77■■□□□ 1.24
COL9A3-204ENST00000463487 CAPN2P17655 700 aa22.77■■□□□ 1.24
COL9A3-204ENST00000463487 ARMCX2Q7L311 632 aa22.77■■□□□ 1.24
COL9A3-204ENST00000463487 WASF1Q92558 559 aa22.77■■□□□ 1.24
COL9A3-204ENST00000463487 XRN2Q9H0D6 950 aaKnown RBP eCLIP22.77■■□□□ 1.242e-9■■□□□ 14.1
COL9A3-204ENST00000463487 ABHD16BQ9H3Z7 469 aa22.77■■□□□ 1.24
COL9A3-204ENST00000463487 STK36Q9NRP7 1315 aa22.77■■□□□ 1.24
COL9A3-204ENST00000463487 XBP1P17861 261 aa22.76■■□□□ 1.23
COL9A3-204ENST00000463487 CNGA1P29973 690 aa22.76■■□□□ 1.23
COL9A3-204ENST00000463487 ADCY7P51828 1080 aa22.76■■□□□ 1.23
COL9A3-204ENST00000463487 PDE4DQ08499 809 aa22.76■■□□□ 1.23
COL9A3-204ENST00000463487 TRIM32Q13049 653 aa22.76■■□□□ 1.23
COL9A3-204ENST00000463487 ARHGEF16Q5VV41 709 aa22.76■■□□□ 1.23
COL9A3-204ENST00000463487 IWS1Q96ST2 819 aa22.76■■□□□ 1.23
COL9A3-204ENST00000463487 RMDN3Q96TC7 470 aa22.76■■□□□ 1.23
COL9A3-204ENST00000463487 UNC93B1Q9H1C4 597 aa22.76■■□□□ 1.23
COL9A3-204ENST00000463487 EHMT1Q9H9B1 1298 aa22.76■■□□□ 1.23
COL9A3-204ENST00000463487 CDKN2AIPQ9NXV6 580 aaPredicted RBP22.76■■□□□ 1.23
COL9A3-204ENST00000463487 STXBP3O00186 592 aa22.75■■□□□ 1.23
COL9A3-204ENST00000463487 PIK3CDO00329 1044 aa22.75■■□□□ 1.23
COL9A3-204ENST00000463487 IGHA2P01877 340 aa22.75■■□□□ 1.23
COL9A3-204ENST00000463487 CYBAP13498 195 aa22.75■■□□□ 1.23
COL9A3-204ENST00000463487 HOXA13P31271 388 aaPredicted RBP22.75■■□□□ 1.23
COL9A3-204ENST00000463487 MTFR1Q15390 333 aa22.75■■□□□ 1.23
COL9A3-204ENST00000463487 FAM177A1Q8N128 213 aaPredicted RBP22.75■■□□□ 1.23
COL9A3-204ENST00000463487 NECAB1Q8N987 351 aa22.75■■□□□ 1.23
COL9A3-204ENST00000463487 TBC1D5Q92609 795 aa22.75■■□□□ 1.23
COL9A3-204ENST00000463487 FGD4Q96M96 766 aa22.75■■□□□ 1.23
COL9A3-204ENST00000463487 SH3GLB2Q9NR46 395 aa22.75■■□□□ 1.23
COL9A3-204ENST00000463487 LARGE1O95461 756 aa22.74■■□□□ 1.23
COL9A3-204ENST00000463487 GJB1P08034 283 aa22.74■■□□□ 1.23
COL9A3-204ENST00000463487 GNA11P29992 359 aa22.74■■□□□ 1.23
COL9A3-204ENST00000463487 MCTP2Q6DN12 878 aa22.74■■□□□ 1.23
COL9A3-204ENST00000463487 FCHSD1Q86WN1 690 aa22.74■■□□□ 1.23
COL9A3-204ENST00000463487 BICD2Q8TD16 824 aa22.74■■□□□ 1.23
COL9A3-204ENST00000463487 C6orf50Q9HD87 102 aa22.74■■□□□ 1.23
COL9A3-204ENST00000463487 RIC8AQ9NPQ8 531 aa22.74■■□□□ 1.23
COL9A3-204ENST00000463487 PAK6Q9NQU5 681 aaPredicted RBP22.74■■□□□ 1.23
COL9A3-204ENST00000463487 ZHX1Q9UKY1 873 aaPredicted RBP22.74■■□□□ 1.23
COL9A3-204ENST00000463487 ESYT2A0FGR8 921 aa22.73■■□□□ 1.23
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms