RNA–Protein interactions for RNA: ENST00000461553.1

USP4-206, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 4

Gene USP4, Length 544 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-206ENST00000461553 RPS6P62753 249 aaKnown RBP16.29■□□□□ 0.2
USP4-206ENST00000461553 NKX3-2P78367 333 aa16.29■□□□□ 0.2
USP4-206ENST00000461553 BEX3Q00994 111 aa16.29■□□□□ 0.2
USP4-206ENST00000461553 FSCN1Q16658 493 aaKnown RBP16.29■□□□□ 0.2
USP4-206ENST00000461553 RALYLQ86SE5 291 aaKnown RBP16.29■□□□□ 0.2
USP4-206ENST00000461553 ADGRF4Q8IZF3 695 aa16.29■□□□□ 0.2
USP4-206ENST00000461553 PDGFCQ9NRA1 345 aa16.29■□□□□ 0.2
USP4-206ENST00000461553 COL6A3P12111 3177 aa16.28■□□□□ 0.2
USP4-206ENST00000461553 SCN10AQ9Y5Y9 1956 aa16.28■□□□□ 0.2
USP4-206ENST00000461553 ERICH2A1L162 156 aa16.28■□□□□ 0.2
USP4-206ENST00000461553 B4DLN1 442 aa16.28■□□□□ 0.2
USP4-206ENST00000461553 TLR3O15455 904 aaKnown RBP16.28■□□□□ 0.2
USP4-206ENST00000461553 SGSM2O43147 1006 aa16.28■□□□□ 0.2
USP4-206ENST00000461553 CYP21A2P08686 494 aa16.28■□□□□ 0.2
USP4-206ENST00000461553 MRPL12P52815 198 aaKnown RBP16.28■□□□□ 0.2
USP4-206ENST00000461553 PTH1RQ03431 593 aa16.28■□□□□ 0.2
USP4-206ENST00000461553 PDE4DQ08499 809 aa16.28■□□□□ 0.2
USP4-206ENST00000461553 IQSEC1Q6DN90 963 aa16.28■□□□□ 0.2
USP4-206ENST00000461553 TAPT1Q6NXT6 567 aa16.28■□□□□ 0.2
USP4-206ENST00000461553 KIAA1211Q6ZU35 1233 aa16.28■□□□□ 0.2
USP4-206ENST00000461553 DNERQ8NFT8 737 aa16.28■□□□□ 0.2
USP4-206ENST00000461553 Q9Y3F1 56 aa16.28■□□□□ 0.2
USP4-206ENST00000461553 ARVCFO00192 962 aa16.27■□□□□ 0.2
USP4-206ENST00000461553 CTAGE5O15320 804 aa16.27■□□□□ 0.2
USP4-206ENST00000461553 DYNC1LI2O43237 492 aaPredicted RBP16.27■□□□□ 0.2
USP4-206ENST00000461553 CABYRO75952 493 aa16.27■□□□□ 0.2
USP4-206ENST00000461553 FAAP100Q0VG06 881 aa16.27■□□□□ 0.2
USP4-206ENST00000461553 SART3Q15020 963 aaKnown RBP16.27■□□□□ 0.2
USP4-206ENST00000461553 SEC23AQ15436 765 aa16.27■□□□□ 0.2
USP4-206ENST00000461553 QRICH1Q2TAL8 776 aa16.27■□□□□ 0.2
USP4-206ENST00000461553 CYB5R4Q7L1T6 521 aa16.27■□□□□ 0.2
USP4-206ENST00000461553 DEFB123Q8N688 67 aa16.27■□□□□ 0.2
USP4-206ENST00000461553 NCOA7Q8NI08 942 aa16.27■□□□□ 0.2
USP4-206ENST00000461553 MYH7BA7E2Y1 1941 aa16.27■□□□□ 0.19
USP4-206ENST00000461553 ITGB8P26012 769 aa16.26■□□□□ 0.19
USP4-206ENST00000461553 FPGSQ05932 587 aa16.26■□□□□ 0.19
USP4-206ENST00000461553 PPP2R5BQ15173 497 aa16.26■□□□□ 0.19
USP4-206ENST00000461553 DUSP28Q4G0W2 176 aa16.26■□□□□ 0.19
USP4-206ENST00000461553 CXCL17Q6UXB2 119 aa16.26■□□□□ 0.19
USP4-206ENST00000461553 FBXO11Q86XK2 927 aa16.26■□□□□ 0.19
USP4-206ENST00000461553 MCF2L2Q86YR7 1114 aa16.26■□□□□ 0.19
USP4-206ENST00000461553 MAF1Q9H063 256 aa16.26■□□□□ 0.19
USP4-206ENST00000461553 TBX21Q9UL17 535 aa16.26■□□□□ 0.19
USP4-206ENST00000461553 TANC1Q9C0D5 1861 aa16.26■□□□□ 0.19
USP4-206ENST00000461553 IFIT3O14879 490 aaKnown RBP16.25■□□□□ 0.19
USP4-206ENST00000461553 PTGS1P23219 599 aa16.25■□□□□ 0.19
USP4-206ENST00000461553 EDNRBP24530 442 aa16.25■□□□□ 0.19
USP4-206ENST00000461553 SHHQ15465 462 aa16.25■□□□□ 0.19
USP4-206ENST00000461553 C9orf50Q5SZB4 431 aa16.25■□□□□ 0.19
USP4-206ENST00000461553 Q7L0L9 218 aa16.25■□□□□ 0.19
USP4-206ENST00000461553 FAM126BQ8IXS8 530 aa16.25■□□□□ 0.19
USP4-206ENST00000461553 RGS22Q8NE09 1264 aa16.25■□□□□ 0.19
USP4-206ENST00000461553 OR6J1Q8NGC5 347 aa16.25■□□□□ 0.19
USP4-206ENST00000461553 WDR11Q9BZH6 1224 aa16.25■□□□□ 0.19
USP4-206ENST00000461553 VAT1LQ9HCJ6 419 aa16.25■□□□□ 0.19
USP4-206ENST00000461553 MRPL11Q9Y3B7 192 aaKnown RBP16.25■□□□□ 0.19
USP4-206ENST00000461553 RBM47A0AV96 593 aaKnown RBP16.24■□□□□ 0.19
USP4-206ENST00000461553 KLRF2D3W0D1 207 aa16.24■□□□□ 0.19
USP4-206ENST00000461553 E7EWF7 191 aa16.24■□□□□ 0.19
USP4-206ENST00000461553 NKRFO15226 690 aaKnown RBP eCLIP16.24■□□□□ 0.19
USP4-206ENST00000461553 CPT1AP50416 773 aa16.24■□□□□ 0.19
USP4-206ENST00000461553 CDK7P50613 346 aa16.24■□□□□ 0.19
USP4-206ENST00000461553 WTAPQ15007 396 aa16.24■□□□□ 0.19
USP4-206ENST00000461553 BRDTQ58F21 947 aaPredicted RBP16.24■□□□□ 0.19
USP4-206ENST00000461553 STAG2Q8N3U4 1231 aa16.24■□□□□ 0.19
USP4-206ENST00000461553 SCFD2Q8WU76 684 aa16.24■□□□□ 0.19
USP4-206ENST00000461553 RNPC3Q96LT9 517 aaKnown RBP16.24■□□□□ 0.19
USP4-206ENST00000461553 AMNQ9BXJ7 453 aa16.24■□□□□ 0.19
USP4-206ENST00000461553 SEZ6LQ9BYH1 1024 aa16.24■□□□□ 0.19
USP4-206ENST00000461553 JMJD4Q9H9V9 463 aa16.24■□□□□ 0.19
USP4-206ENST00000461553 POLR3EQ9NVU0 708 aa16.24■□□□□ 0.19
USP4-206ENST00000461553 RBM8AQ9Y5S9 174 aaKnown RBP16.24■□□□□ 0.19
USP4-206ENST00000461553 GBF1Q92538 1859 aa16.23■□□□□ 0.19
USP4-206ENST00000461553 TIMP1P01033 207 aa16.23■□□□□ 0.19
USP4-206ENST00000461553 ITGA7Q13683 1181 aa16.23■□□□□ 0.19
USP4-206ENST00000461553 GRM4Q14833 912 aa16.23■□□□□ 0.19
USP4-206ENST00000461553 MAD2L2Q9UI95 211 aa16.23■□□□□ 0.19
USP4-206ENST00000461553 CDH23Q9H251 3354 aa16.22■□□□□ 0.19
USP4-206ENST00000461553 ZBTB5O15062 677 aa16.22■□□□□ 0.19
USP4-206ENST00000461553 PPIGQ13427 754 aaKnown RBP eCLIP16.22■□□□□ 0.19
USP4-206ENST00000461553 TTLL4Q14679 1199 aa16.22■□□□□ 0.19
USP4-206ENST00000461553 TMEM67Q5HYA8 995 aa16.22■□□□□ 0.19
USP4-206ENST00000461553 TMEM63BQ5T3F8 832 aa16.22■□□□□ 0.19
USP4-206ENST00000461553 ZNF697Q5TEC3 545 aa16.22■□□□□ 0.19
USP4-206ENST00000461553 STOX1Q6ZVD7 989 aa16.22■□□□□ 0.19
USP4-206ENST00000461553 CENPQQ7L2Z9 268 aaPredicted RBP16.22■□□□□ 0.19
USP4-206ENST00000461553 HOMER1Q86YM7 354 aa16.22■□□□□ 0.19
USP4-206ENST00000461553 SYTL5Q8TDW5 730 aaPredicted RBP16.22■□□□□ 0.19
USP4-206ENST00000461553 NSUN6Q8TEA1 469 aaKnown RBP16.22■□□□□ 0.19
USP4-206ENST00000461553 MAP4K1Q92918 833 aa16.22■□□□□ 0.19
USP4-206ENST00000461553 PPP1R12CQ9BZL4 782 aa16.22■□□□□ 0.19
USP4-206ENST00000461553 PALM3A6NDB9 673 aaPredicted RBP16.21■□□□□ 0.19
USP4-206ENST00000461553 CFBP00751 764 aa16.21■□□□□ 0.19
USP4-206ENST00000461553 MYL3P08590 195 aa16.21■□□□□ 0.19
USP4-206ENST00000461553 PSMC6P62333 389 aa16.21■□□□□ 0.19
USP4-206ENST00000461553 TRAF1Q13077 416 aa16.21■□□□□ 0.19
USP4-206ENST00000461553 MFSD5Q6N075 450 aa16.21■□□□□ 0.19
USP4-206ENST00000461553 CASC1Q6TDU7 716 aa16.21■□□□□ 0.19
USP4-206ENST00000461553 CHST3Q7LGC8 479 aa16.21■□□□□ 0.19
USP4-206ENST00000461553 CATIPQ7Z7H3 387 aa16.21■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms