RNA–Protein interactions for RNA: ENST00000455596.5

HMGB3-205, Transcript of high mobility group box 3, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene HMGB3, Length 793 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-205ENST00000455596 PDGFCQ9NRA1 345 aa24.73■■□□□ 1.55
HMGB3-205ENST00000455596 PCDH10Q9P2E7 1040 aa24.73■■□□□ 1.55
HMGB3-205ENST00000455596 GNEQ9Y223 722 aaKnown RBP24.73■■□□□ 1.55
HMGB3-205ENST00000455596 PALM3A6NDB9 673 aaPredicted RBP24.72■■□□□ 1.55
HMGB3-205ENST00000455596 ASGR1P07306 291 aa24.72■■□□□ 1.55
HMGB3-205ENST00000455596 ANTXR2P58335 489 aa24.72■■□□□ 1.55
HMGB3-205ENST00000455596 NKX3-2P78367 333 aa24.72■■□□□ 1.55
HMGB3-205ENST00000455596 GRM4Q14833 912 aa24.72■■□□□ 1.55
HMGB3-205ENST00000455596 TMEM67Q5HYA8 995 aa24.72■■□□□ 1.55
HMGB3-205ENST00000455596 GNASQ5JWF2 1037 aa24.72■■□□□ 1.55
HMGB3-205ENST00000455596 TLK2Q86UE8 772 aa24.72■■□□□ 1.55
HMGB3-205ENST00000455596 GLT1D1Q96MS3 346 aa24.72■■□□□ 1.55
HMGB3-205ENST00000455596 ANO2Q9NQ90 1003 aa24.72■■□□□ 1.55
HMGB3-205ENST00000455596 PRDM5Q9NQX1 630 aaPredicted RBP24.72■■□□□ 1.55
HMGB3-205ENST00000455596 BAZ2BQ9UIF8 2168 aaKnown RBP24.71■■□□□ 1.55
HMGB3-205ENST00000455596 B4DLN1 442 aa24.71■■□□□ 1.55
HMGB3-205ENST00000455596 SMPD1P17405 629 aa24.71■■□□□ 1.55
HMGB3-205ENST00000455596 MRPL12P52815 198 aaKnown RBP24.71■■□□□ 1.55
HMGB3-205ENST00000455596 MCF2L2Q86YR7 1114 aa24.71■■□□□ 1.55
HMGB3-205ENST00000455596 AP5M1Q9H0R1 490 aa24.71■■□□□ 1.55
HMGB3-205ENST00000455596 SENP2Q9HC62 589 aa24.71■■□□□ 1.55
HMGB3-205ENST00000455596 PDLIM7Q9NR12 457 aa24.71■■□□□ 1.55
HMGB3-205ENST00000455596 MRPL11Q9Y3B7 192 aaKnown RBP24.71■■□□□ 1.55
HMGB3-205ENST00000455596 ELP1O95163 1332 aa24.7■■□□□ 1.54
HMGB3-205ENST00000455596 SLC27A2O14975 620 aa24.7■■□□□ 1.54
HMGB3-205ENST00000455596 CTAGE5O15320 804 aa24.7■■□□□ 1.54
HMGB3-205ENST00000455596 TLE2Q04725 743 aa24.7■■□□□ 1.54
HMGB3-205ENST00000455596 PDE4DQ08499 809 aa24.7■■□□□ 1.54
HMGB3-205ENST00000455596 CASC1Q6TDU7 716 aa24.7■■□□□ 1.54
HMGB3-205ENST00000455596 CATIPQ7Z7H3 387 aa24.7■■□□□ 1.54
HMGB3-205ENST00000455596 TDHQ8IZJ6 230 aa24.7■■□□□ 1.54
HMGB3-205ENST00000455596 IGDCC4Q8TDY8 1250 aa24.7■■□□□ 1.54
HMGB3-205ENST00000455596 MTA3Q9BTC8 594 aa24.7■■□□□ 1.54
HMGB3-205ENST00000455596 AMNQ9BXJ7 453 aa24.7■■□□□ 1.54
HMGB3-205ENST00000455596 Q9Y3F1 56 aa24.7■■□□□ 1.54
HMGB3-205ENST00000455596 BEX3Q00994 111 aa24.69■■□□□ 1.54
HMGB3-205ENST00000455596 NECTIN1Q15223 517 aa24.69■■□□□ 1.54
HMGB3-205ENST00000455596 VTI1AQ96AJ9 217 aa24.69■■□□□ 1.54
HMGB3-205ENST00000455596 MTMR8Q96EF0 704 aa24.69■■□□□ 1.54
HMGB3-205ENST00000455596 DNAH12Q6ZR08 3092 aa24.68■■□□□ 1.54
HMGB3-205ENST00000455596 ZBTB5O15062 677 aa24.68■■□□□ 1.54
HMGB3-205ENST00000455596 DYNC1LI2O43237 492 aaPredicted RBP24.68■■□□□ 1.54
HMGB3-205ENST00000455596 PQBP1O60828 265 aaKnown RBP24.68■■□□□ 1.54
HMGB3-205ENST00000455596 CLTBP09497 229 aa24.68■■□□□ 1.54
HMGB3-205ENST00000455596 EDNRBP24530 442 aa24.68■■□□□ 1.54
HMGB3-205ENST00000455596 MCM5P33992 734 aa24.68■■□□□ 1.54
HMGB3-205ENST00000455596 TROAPQ12815 778 aa24.68■■□□□ 1.54
HMGB3-205ENST00000455596 CREB3L3Q68CJ9 461 aa24.68■■□□□ 1.54
HMGB3-205ENST00000455596 TBC1D5Q92609 795 aa24.68■■□□□ 1.54
HMGB3-205ENST00000455596 MROH7Q68CQ1 1323 aa24.67■■□□□ 1.54
HMGB3-205ENST00000455596 RBM47A0AV96 593 aaKnown RBP24.67■■□□□ 1.54
HMGB3-205ENST00000455596 PRC1O43663 620 aa24.67■■□□□ 1.54
HMGB3-205ENST00000455596 CDC45O75419 566 aa24.67■■□□□ 1.54
HMGB3-205ENST00000455596 FSCN1Q16658 493 aaKnown RBP24.67■■□□□ 1.54
HMGB3-205ENST00000455596 DUSP28Q4G0W2 176 aa24.67■■□□□ 1.54
HMGB3-205ENST00000455596 ANKRD33Q7Z3H0 272 aa24.67■■□□□ 1.54
HMGB3-205ENST00000455596 SH3RF1Q7Z6J0 888 aa24.67■■□□□ 1.54
HMGB3-205ENST00000455596 TMEM87BQ96K49 555 aa24.67■■□□□ 1.54
HMGB3-205ENST00000455596 TOX2Q96NM4 488 aa24.67■■□□□ 1.54
HMGB3-205ENST00000455596 WDR11Q9BZH6 1224 aa24.67■■□□□ 1.54
HMGB3-205ENST00000455596 RIOX1Q9H6W3 641 aa24.67■■□□□ 1.54
HMGB3-205ENST00000455596 LY9Q9HBG7 655 aa24.67■■□□□ 1.54
HMGB3-205ENST00000455596 A0A0U1RQG5 324 aaPredicted RBP24.66■■□□□ 1.54
HMGB3-205ENST00000455596 DCDC2CA8MYV0 355 aa24.66■■□□□ 1.54
HMGB3-205ENST00000455596 ZEB2O60315 1214 aa24.66■■□□□ 1.54
HMGB3-205ENST00000455596 TMEM63BQ5T3F8 832 aa24.66■■□□□ 1.54
HMGB3-205ENST00000455596 RNF20Q5VTR2 975 aa24.66■■□□□ 1.54
HMGB3-205ENST00000455596 HOMER1Q86YM7 354 aa24.66■■□□□ 1.54
HMGB3-205ENST00000455596 SYTL5Q8TDW5 730 aaPredicted RBP24.66■■□□□ 1.54
HMGB3-205ENST00000455596 TRIM43BA6NCK2 446 aa24.65■■□□□ 1.54
HMGB3-205ENST00000455596 NEFLP07196 543 aa24.65■■□□□ 1.54
HMGB3-205ENST00000455596 PTGS1P23219 599 aa24.65■■□□□ 1.54
HMGB3-205ENST00000455596 TRAF1Q13077 416 aa24.65■■□□□ 1.54
HMGB3-205ENST00000455596 ZNF654Q8IZM8 581 aa24.65■■□□□ 1.54
HMGB3-205ENST00000455596 TMTC2Q8N394 836 aa24.65■■□□□ 1.54
HMGB3-205ENST00000455596 NSUN6Q8TEA1 469 aaKnown RBP24.65■■□□□ 1.54
HMGB3-205ENST00000455596 TRIM43Q96BQ3 446 aaPredicted RBP24.65■■□□□ 1.54
HMGB3-205ENST00000455596 TAAR1Q96RJ0 339 aa24.65■■□□□ 1.54
HMGB3-205ENST00000455596 MAP3K14Q99558 947 aa24.65■■□□□ 1.54
HMGB3-205ENST00000455596 PCDHA1Q9Y5I3 950 aa24.65■■□□□ 1.54
HMGB3-205ENST00000455596 PPP1R11O60927 126 aaPredicted RBP24.64■■□□□ 1.54
HMGB3-205ENST00000455596 CABYRO75952 493 aa24.64■■□□□ 1.54
HMGB3-205ENST00000455596 DDAH1O94760 285 aa24.64■■□□□ 1.54
HMGB3-205ENST00000455596 CFBP00751 764 aa24.64■■□□□ 1.54
HMGB3-205ENST00000455596 CXCL17Q6UXB2 119 aa24.64■■□□□ 1.54
HMGB3-205ENST00000455596 CTCFLQ8NI51 663 aaPredicted RBP24.64■■□□□ 1.54
HMGB3-205ENST00000455596 SCFD2Q8WU76 684 aa24.64■■□□□ 1.54
HMGB3-205ENST00000455596 BADQ92934 168 aa24.64■■□□□ 1.54
HMGB3-205ENST00000455596 PIGSQ96S52 555 aa24.64■■□□□ 1.54
HMGB3-205ENST00000455596 COL20A1Q9P218 1284 aa24.64■■□□□ 1.54
HMGB3-205ENST00000455596 MYH7BA7E2Y1 1941 aa24.64■■□□□ 1.53
HMGB3-205ENST00000455596 ARVCFO00192 962 aa24.63■■□□□ 1.53
HMGB3-205ENST00000455596 SOX1O00570 391 aaPredicted RBP24.63■■□□□ 1.53
HMGB3-205ENST00000455596 NKRFO15226 690 aaKnown RBP eCLIP24.63■■□□□ 1.531e-7■■■■□ 25.2
HMGB3-205ENST00000455596 CYTH3O43739 400 aa24.63■■□□□ 1.53
HMGB3-205ENST00000455596 CDK7P50613 346 aa24.63■■□□□ 1.53
HMGB3-205ENST00000455596 FAAP100Q0VG06 881 aa24.63■■□□□ 1.53
HMGB3-205ENST00000455596 PPP2R5BQ15173 497 aa24.63■■□□□ 1.53
HMGB3-205ENST00000455596 SLC35G1Q2M3R5 365 aa24.63■■□□□ 1.53
HMGB3-205ENST00000455596 LRIT3Q3SXY7 679 aa24.63■■□□□ 1.53
Retrieved 100 of 20,778 RNA–protein pairs in 49 ms