RNA–Protein interactions for RNA: ENST00000448905.6

HMGB3-204, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 812 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-204ENST00000448905 PDE1AP54750 535 aa15.63■□□□□ 0.09
HMGB3-204ENST00000448905 PDE4DQ08499 809 aa15.63■□□□□ 0.09
HMGB3-204ENST00000448905 TJAP1Q5JTD0 557 aa15.63■□□□□ 0.09
HMGB3-204ENST00000448905 AKNAD1Q5T1N1 836 aa15.63■□□□□ 0.09
HMGB3-204ENST00000448905 TTBK2Q6IQ55 1244 aa15.63■□□□□ 0.09
HMGB3-204ENST00000448905 RNF207Q6ZRF8 634 aa15.63■□□□□ 0.09
HMGB3-204ENST00000448905 OTOP2Q7RTS6 562 aa15.63■□□□□ 0.09
HMGB3-204ENST00000448905 ATXN2LQ8WWM7 1075 aaKnown RBP15.63■□□□□ 0.09
HMGB3-204ENST00000448905 PPM1EQ8WY54 764 aa15.63■□□□□ 0.09
HMGB3-204ENST00000448905 NOC4LQ9BVI4 516 aaKnown RBP15.63■□□□□ 0.09
HMGB3-204ENST00000448905 TSPYL2Q9H2G4 693 aaPredicted RBP15.63■□□□□ 0.09
HMGB3-204ENST00000448905 TRIM6-TRIM34B2RNG4 842 aa15.62■□□□□ 0.09
HMGB3-204ENST00000448905 FOXP2O15409 715 aa15.62■□□□□ 0.09
HMGB3-204ENST00000448905 B4GALT4O60513 344 aa15.62■□□□□ 0.09
HMGB3-204ENST00000448905 PFKMP08237 780 aa15.62■□□□□ 0.09
HMGB3-204ENST00000448905 HSPD1P10809 573 aaKnown RBP15.62■□□□□ 0.09
HMGB3-204ENST00000448905 IGFBP4P22692 258 aa15.62■□□□□ 0.09
HMGB3-204ENST00000448905 ALDH5A1P51649 535 aaPredicted RBP15.62■□□□□ 0.09
HMGB3-204ENST00000448905 PSMC6P62333 389 aa15.62■□□□□ 0.09
HMGB3-204ENST00000448905 CCDC178Q5BJE1 867 aa15.62■□□□□ 0.09
HMGB3-204ENST00000448905 GPATCH4Q5T3I0 446 aaKnown RBP15.62■□□□□ 0.09
HMGB3-204ENST00000448905 RETREG2Q8NC44 543 aa15.62■□□□□ 0.09
HMGB3-204ENST00000448905 DNERQ8NFT8 737 aa15.62■□□□□ 0.09
HMGB3-204ENST00000448905 MTG1Q9BT17 334 aaPredicted RBP15.62■□□□□ 0.09
HMGB3-204ENST00000448905 MAF1Q9H063 256 aa15.62■□□□□ 0.09
HMGB3-204ENST00000448905 ALDH8A1Q9H2A2 487 aaPredicted RBP15.62■□□□□ 0.09
HMGB3-204ENST00000448905 PRDM12Q9H4Q4 367 aa15.62■□□□□ 0.09
HMGB3-204ENST00000448905 GRIN2DO15399 1336 aa15.62■□□□□ 0.09
HMGB3-204ENST00000448905 FRMPD2Q68DX3 1309 aaPredicted RBP15.62■□□□□ 0.09
HMGB3-204ENST00000448905 CUL9Q8IWT3 2517 aa15.61■□□□□ 0.09
HMGB3-204ENST00000448905 RBM47A0AV96 593 aaKnown RBP15.61■□□□□ 0.09
HMGB3-204ENST00000448905 ZBBXA8MT70 800 aa15.61■□□□□ 0.09
HMGB3-204ENST00000448905 ZNF213O14771 459 aa15.61■□□□□ 0.09
HMGB3-204ENST00000448905 MYL3P08590 195 aa15.61■□□□□ 0.09
HMGB3-204ENST00000448905 ACTN1P12814 892 aa15.61■□□□□ 0.09
HMGB3-204ENST00000448905 HDAC1Q13547 482 aaPredicted RBP15.61■□□□□ 0.09
HMGB3-204ENST00000448905 AAMPQ13685 434 aa15.61■□□□□ 0.09
HMGB3-204ENST00000448905 RGS22Q8NE09 1264 aa15.61■□□□□ 0.09
HMGB3-204ENST00000448905 IL27Q8NEV9 243 aa15.61■□□□□ 0.09
HMGB3-204ENST00000448905 OR6J1Q8NGC5 347 aa15.61■□□□□ 0.09
HMGB3-204ENST00000448905 SCFD2Q8WU76 684 aa15.61■□□□□ 0.09
HMGB3-204ENST00000448905 ESR2Q92731 530 aa15.61■□□□□ 0.09
HMGB3-204ENST00000448905 RILPL2Q969X0 211 aa15.61■□□□□ 0.09
HMGB3-204ENST00000448905 FAM227BQ96M60 508 aa15.61■□□□□ 0.09
HMGB3-204ENST00000448905 PURBQ96QR8 312 aaKnown RBP15.61■□□□□ 0.09
HMGB3-204ENST00000448905 NFIBO00712 420 aa15.6■□□□□ 0.09
HMGB3-204ENST00000448905 PDHBP11177 359 aa15.6■□□□□ 0.09
HMGB3-204ENST00000448905 RRP1P56182 461 aaKnown RBP15.6■□□□□ 0.09
HMGB3-204ENST00000448905 DGKHQ86XP1 1220 aa15.6■□□□□ 0.09
HMGB3-204ENST00000448905 PRDM6Q9NQX0 595 aa15.6■□□□□ 0.09
HMGB3-204ENST00000448905 CXXC1Q9P0U4 656 aaPredicted RBP15.6■□□□□ 0.09
HMGB3-204ENST00000448905 DDX49Q9Y6V7 483 aaKnown RBP15.6■□□□□ 0.09
HMGB3-204ENST00000448905 SALL3Q9BXA9 1300 aa15.6■□□□□ 0.09
HMGB3-204ENST00000448905 TXNP10599 105 aaKnown RBP15.59■□□□□ 0.09
HMGB3-204ENST00000448905 ATP2A2P16615 1042 aaKnown RBP15.59■□□□□ 0.09
HMGB3-204ENST00000448905 RFC2P35250 354 aa15.59■□□□□ 0.09
HMGB3-204ENST00000448905 RPS6P62753 249 aaKnown RBP15.59■□□□□ 0.09
HMGB3-204ENST00000448905 MRPS5P82675 430 aaKnown RBP15.59■□□□□ 0.09
HMGB3-204ENST00000448905 PURAQ00577 322 aaKnown RBP15.59■□□□□ 0.09
HMGB3-204ENST00000448905 ZNF543Q08ER8 600 aa15.59■□□□□ 0.09
HMGB3-204ENST00000448905 PPP2R5BQ15173 497 aa15.59■□□□□ 0.09
HMGB3-204ENST00000448905 FAM47CQ5HY64 1035 aa15.59■□□□□ 0.09
HMGB3-204ENST00000448905 TMEM63BQ5T3F8 832 aa15.59■□□□□ 0.09
HMGB3-204ENST00000448905 IQCA1Q86XH1 822 aa15.59■□□□□ 0.09
HMGB3-204ENST00000448905 USP38Q8NB14 1042 aa15.59■□□□□ 0.09
HMGB3-204ENST00000448905 CLEC4DQ8WXI8 215 aa15.59■□□□□ 0.09
HMGB3-204ENST00000448905 NKX2-4Q9H2Z4 354 aa15.59■□□□□ 0.09
HMGB3-204ENST00000448905 RWDD1Q9H446 243 aaPredicted RBP15.59■□□□□ 0.09
HMGB3-204ENST00000448905 NOD1Q9Y239 953 aa15.59■□□□□ 0.09
HMGB3-204ENST00000448905 PCDHA11Q9Y5I1 949 aa15.59■□□□□ 0.09
HMGB3-204ENST00000448905 TNKSO95271 1327 aa15.59■□□□□ 0.09
HMGB3-204ENST00000448905 WDR19Q8NEZ3 1342 aa15.59■□□□□ 0.09
HMGB3-204ENST00000448905 A6NJR5 290 aa15.58■□□□□ 0.08
HMGB3-204ENST00000448905 HAND2P61296 217 aa15.58■□□□□ 0.08
HMGB3-204ENST00000448905 PTPN11Q06124 597 aaPredicted RBP15.58■□□□□ 0.08
HMGB3-204ENST00000448905 TTLL4Q14679 1199 aa15.58■□□□□ 0.08
HMGB3-204ENST00000448905 CCDC85BQ15834 202 aaPredicted RBP15.58■□□□□ 0.08
HMGB3-204ENST00000448905 NFRKBQ6P4R8 1299 aa15.58■□□□□ 0.08
HMGB3-204ENST00000448905 MCF2L2Q86YR7 1114 aa15.58■□□□□ 0.08
HMGB3-204ENST00000448905 SCLYQ96I15 445 aa15.58■□□□□ 0.08
HMGB3-204ENST00000448905 ASB2Q96Q27 587 aa15.58■□□□□ 0.08
HMGB3-204ENST00000448905 TRMT13Q9NUP7 481 aaKnown RBP15.58■□□□□ 0.08
HMGB3-204ENST00000448905 ZMYM6O95789 1325 aa15.58■□□□□ 0.08
HMGB3-204ENST00000448905 UMODL1Q5DID0 1318 aa15.58■□□□□ 0.08
HMGB3-204ENST00000448905 MYH7P12883 1935 aa15.58■□□□□ 0.08
HMGB3-204ENST00000448905 VCANP13611 3396 aa15.57■□□□□ 0.08
HMGB3-204ENST00000448905 A0A0D9SFI3 127 aa15.57■□□□□ 0.08
HMGB3-204ENST00000448905 KIF28PB7ZC32 967 aa15.57■□□□□ 0.08
HMGB3-204ENST00000448905 TNFRSF10AO00220 468 aa15.57■□□□□ 0.08
HMGB3-204ENST00000448905 SNHG28P0DPA3 235 aa15.57■□□□□ 0.08
HMGB3-204ENST00000448905 CYP2C9P11712 490 aa15.57■□□□□ 0.08
HMGB3-204ENST00000448905 PTGS1P23219 599 aa15.57■□□□□ 0.08
HMGB3-204ENST00000448905 NMIQ13287 307 aaPredicted RBP15.57■□□□□ 0.08
HMGB3-204ENST00000448905 BFSP2Q13515 415 aa15.57■□□□□ 0.08
HMGB3-204ENST00000448905 NBPF20Q3BBV1 942 aa15.57■□□□□ 0.08
HMGB3-204ENST00000448905 TMEM67Q5HYA8 995 aa15.57■□□□□ 0.08
HMGB3-204ENST00000448905 PPP2R2DQ66LE6 453 aa15.57■□□□□ 0.08
HMGB3-204ENST00000448905 RASGRP2Q7LDG7 609 aa15.57■□□□□ 0.08
HMGB3-204ENST00000448905 CRBNQ96SW2 442 aa15.57■□□□□ 0.08
HMGB3-204ENST00000448905 FTOQ9C0B1 505 aaKnown RBP eCLIP15.57■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms