RNA–Protein interactions for RNA: ENST00000445503.5

MSH6-204, Transcript of mutS homolog 6, human

TSL 1 (best)

Gene MSH6, Length 4,158 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
MSH6-204	ENST00000445503	PDXDC2P	Q6P474	469 aa		13.18	□□□□□ -0.3
MSH6-204	ENST00000445503	TMX4	Q9H1E5	349 aa	Predicted RBP	13.18	□□□□□ -0.3
MSH6-204	ENST00000445503	NDUFAB1	O14561	156 aa		13.17	□□□□□ -0.3
MSH6-204	ENST00000445503	NFRKB	Q6P4R8	1299 aa		13.17	□□□□□ -0.3
MSH6-204	ENST00000445503	FOXR1	Q6PIV2	292 aa		13.17	□□□□□ -0.3
MSH6-204	ENST00000445503	BSDC1	Q9NW68	430 aa	Predicted RBP	13.17	□□□□□ -0.3
MSH6-204	ENST00000445503	TMEM260	Q9NX78	707 aa		13.17	□□□□□ -0.3
MSH6-204	ENST00000445503	LCMT1	Q9UIC8	334 aa		13.17	□□□□□ -0.3
MSH6-204	ENST00000445503	RIMBP2	O15034	1052 aa		13.17	□□□□□ -0.3
MSH6-204	ENST00000445503	RFC4	P35249	363 aa		13.17	□□□□□ -0.3
MSH6-204	ENST00000445503	POLR2F	P61218	127 aa	Known RBP	13.17	□□□□□ -0.3
MSH6-204	ENST00000445503	C3orf67	Q6ZVT6	689 aa		13.17	□□□□□ -0.3
MSH6-204	ENST00000445503	EHD2	Q9NZN4	543 aa		13.17	□□□□□ -0.3
MSH6-204	ENST00000445503	MKRN1	Q9UHC7	482 aa	Known RBP	13.17	□□□□□ -0.3
MSH6-204	ENST00000445503	FEZ2	Q9UHY8	353 aa	Predicted RBP	13.17	□□□□□ -0.3
MSH6-204	ENST00000445503	CAPN11	Q9UMQ6	739 aa		13.17	□□□□□ -0.3
MSH6-204	ENST00000445503	PCDHA13	Q9Y5I0	950 aa		13.17	□□□□□ -0.3
MSH6-204	ENST00000445503	ITIH6	Q6UXX5	1313 aa		13.17	□□□□□ -0.3
MSH6-204	ENST00000445503	SLIT3	O75094	1523 aa		13.17	□□□□□ -0.3
MSH6-204	ENST00000445503	CAMTA2	O94983	1202 aa		13.17	□□□□□ -0.3
MSH6-204	ENST00000445503	FTCD	O95954	541 aa		13.17	□□□□□ -0.3
MSH6-204	ENST00000445503	PC	P11498	1178 aa	Known RBP	13.17	□□□□□ -0.3
MSH6-204	ENST00000445503	ZNF76	P36508	570 aa		13.17	□□□□□ -0.3
MSH6-204	ENST00000445503	KIF11	P52732	1056 aa		13.17	□□□□□ -0.3
MSH6-204	ENST00000445503	DCAF17	Q5H9S7	520 aa	Predicted RBP	13.17	□□□□□ -0.3
MSH6-204	ENST00000445503	SH3RF1	Q7Z6J0	888 aa		13.17	□□□□□ -0.3
MSH6-204	ENST00000445503	CERS3	Q8IU89	383 aa		13.17	□□□□□ -0.3
MSH6-204	ENST00000445503	RPGRIP1	Q96KN7	1286 aa		13.17	□□□□□ -0.3
MSH6-204	ENST00000445503	GTF2A1	P52655	376 aa	Predicted RBP	13.17	□□□□□ -0.3
MSH6-204	ENST00000445503	FAM182B	Q5T319	152 aa		13.17	□□□□□ -0.3
MSH6-204	ENST00000445503	TMC4	Q7Z404	712 aa		13.17	□□□□□ -0.3
MSH6-204	ENST00000445503	CCDC84	Q86UT8	332 aa	Predicted RBP	13.17	□□□□□ -0.3
MSH6-204	ENST00000445503	TMEM47	Q9BQJ4	181 aa		13.17	□□□□□ -0.3
MSH6-204	ENST00000445503	LSM14B	Q9BX40	385 aa	Known RBP	13.17	□□□□□ -0.3
MSH6-204	ENST00000445503	PCDHA6	Q9UN73	950 aa		13.17	□□□□□ -0.3
MSH6-204	ENST00000445503	PCDHA8	Q9Y5H6	950 aa		13.17	□□□□□ -0.3
MSH6-204	ENST00000445503	ARHGAP25	P42331	645 aa		13.16	□□□□□ -0.3
MSH6-204	ENST00000445503	MNAT1	P51948	309 aa		13.16	□□□□□ -0.3
MSH6-204	ENST00000445503	GUCY2D	Q02846	1103 aa		13.16	□□□□□ -0.3
MSH6-204	ENST00000445503	SLC9C1	Q4G0N8	1177 aa		13.16	□□□□□ -0.3
MSH6-204	ENST00000445503	NDST4	Q9H3R1	872 aa		13.16	□□□□□ -0.3
MSH6-204	ENST00000445503	GOPC	Q9HD26	462 aa		13.16	□□□□□ -0.3
MSH6-204	ENST00000445503	HYOU1	Q9Y4L1	999 aa		13.16	□□□□□ -0.3
MSH6-204	ENST00000445503	ESYT3	A0FGR9	886 aa		13.16	□□□□□ -0.3
MSH6-204	ENST00000445503	NTSR2	O95665	410 aa		13.16	□□□□□ -0.3
MSH6-204	ENST00000445503	EHHADH	Q08426	723 aa		13.16	□□□□□ -0.3
MSH6-204	ENST00000445503	ITPK1	Q13572	414 aa		13.16	□□□□□ -0.3
MSH6-204	ENST00000445503	IL17A	Q16552	155 aa		13.16	□□□□□ -0.3
MSH6-204	ENST00000445503	CHD2	O14647	1828 aa	Known RBP	13.16	□□□□□ -0.3
MSH6-204	ENST00000445503	POTEM	A6NI47	508 aa		13.16	□□□□□ -0.3
MSH6-204	ENST00000445503	ADAMTS3	O15072	1205 aa		13.16	□□□□□ -0.3
MSH6-204	ENST00000445503	UFL1	O94874	794 aa		13.16	□□□□□ -0.3
MSH6-204	ENST00000445503	ZNF804A	Q7Z570	1209 aa		13.16	□□□□□ -0.3
MSH6-204	ENST00000445503	MSANTD4	Q8NCY6	345 aa		13.16	□□□□□ -0.3
MSH6-204	ENST00000445503	WDR66	Q8TBY9	1149 aa		13.16	□□□□□ -0.3
MSH6-204	ENST00000445503	NYX	Q9GZU5	481 aa		13.16	□□□□□ -0.3
MSH6-204	ENST00000445503	UTP18	Q9Y5J1	556 aa	Known RBP eCLIP	13.16	□□□□□ -0.3
MSH6-204	ENST00000445503	HERVK_113	P62684	666 aa		13.15	□□□□□ -0.3
MSH6-204	ENST00000445503	KLHL30	Q0D2K2	578 aa		13.15	□□□□□ -0.3
MSH6-204	ENST00000445503	MTR	Q99707	1265 aa		13.15	□□□□□ -0.3
MSH6-204	ENST00000445503	LRRC1	Q9BTT6	524 aa		13.15	□□□□□ -0.3
MSH6-204	ENST00000445503	CAPS2	Q9BXY5	557 aa		13.15	□□□□□ -0.3
MSH6-204	ENST00000445503	ADCY7	P51828	1080 aa		13.15	□□□□□ -0.3
MSH6-204	ENST00000445503	GFPT1	Q06210	699 aa	Predicted RBP	13.15	□□□□□ -0.3
MSH6-204	ENST00000445503	FAM98C	Q17RN3	349 aa	Known RBP	13.15	□□□□□ -0.3
MSH6-204	ENST00000445503	SFMBT2	Q5VUG0	894 aa		13.15	□□□□□ -0.3
MSH6-204	ENST00000445503	HNRNPLL	Q8WVV9	542 aa	Known RBP	13.15	□□□□□ -0.3
MSH6-204	ENST00000445503	TRIM31	Q9BZY9	425 aa		13.15	□□□□□ -0.3
MSH6-204	ENST00000445503	CEP104	O60308	925 aa		13.15	□□□□□ -0.3
MSH6-204	ENST00000445503	BTD	P43251	543 aa		13.15	□□□□□ -0.3
MSH6-204	ENST00000445503	CFAP221	Q4G0U5	840 aa		13.15	□□□□□ -0.3
MSH6-204	ENST00000445503	INTS5	Q6P9B9	1019 aa	Known RBP	13.15	□□□□□ -0.3
MSH6-204	ENST00000445503	POTED	Q86YR6	584 aa		13.15	□□□□□ -0.3
MSH6-204	ENST00000445503	CCDC170	Q8IYT3	715 aa		13.15	□□□□□ -0.3
MSH6-204	ENST00000445503	SPATA20	Q8TB22	786 aa		13.15	□□□□□ -0.3
MSH6-204	ENST00000445503	TRIM9	Q9C026	710 aa		13.15	□□□□□ -0.3
MSH6-204	ENST00000445503	TMEM51	Q9NW97	253 aa		13.15	□□□□□ -0.3
MSH6-204	ENST00000445503	JRKL	Q9Y4A0	524 aa		13.15	□□□□□ -0.3
MSH6-204	ENST00000445503	LRRC53	A6NM62	1247 aa		13.14	□□□□□ -0.31
MSH6-204	ENST00000445503	IFFO1	Q0D2I5	559 aa		13.14	□□□□□ -0.31
MSH6-204	ENST00000445503	EZH2	Q15910	746 aa	Known RBP	13.14	□□□□□ -0.31
MSH6-204	ENST00000445503	SRL	Q86TD4	932 aa		13.14	□□□□□ -0.31
MSH6-204	ENST00000445503	DGKH	Q86XP1	1220 aa		13.14	□□□□□ -0.31
MSH6-204	ENST00000445503	COG1	Q8WTW3	980 aa		13.14	□□□□□ -0.31
MSH6-204	ENST00000445503	LARP4B	Q92615	738 aa	Known RBP	13.14	□□□□□ -0.31
MSH6-204	ENST00000445503	EPB41L5	Q9HCM4	733 aa		13.14	□□□□□ -0.31
MSH6-204	ENST00000445503	ANAPC4	Q9UJX5	808 aa		13.14	□□□□□ -0.31
MSH6-204	ENST00000445503	EIF3CL	B5ME19	914 aa	Known RBP	13.14	□□□□□ -0.31
MSH6-204	ENST00000445503	TCP1	P17987	556 aa	Known RBP	13.14	□□□□□ -0.31
MSH6-204	ENST00000445503	UBE2S	Q16763	222 aa		13.14	□□□□□ -0.31
MSH6-204	ENST00000445503	KIAA0753	Q2KHM9	967 aa		13.14	□□□□□ -0.31
MSH6-204	ENST00000445503	TBC1D9B	Q66K14	1250 aa		13.14	□□□□□ -0.31
MSH6-204	ENST00000445503	CCDC155	Q8N6L0	562 aa		13.14	□□□□□ -0.31
MSH6-204	ENST00000445503	OTUD6B	Q8N6M0	293 aa		13.14	□□□□□ -0.31
MSH6-204	ENST00000445503	GPATCH11	Q8N954	259 aa		13.14	□□□□□ -0.31
MSH6-204	ENST00000445503	GJA10	Q969M2	543 aa		13.14	□□□□□ -0.31
MSH6-204	ENST00000445503	SHISA4	Q96DD7	197 aa		13.14	□□□□□ -0.31
MSH6-204	ENST00000445503	CCDC43	Q96MW1	224 aa	Known RBP	13.14	□□□□□ -0.31
MSH6-204	ENST00000445503	CEP89	Q96ST8	783 aa		13.14	□□□□□ -0.31
MSH6-204	ENST00000445503	KRT12	Q99456	494 aa		13.14	□□□□□ -0.31

Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms