RNA–Protein interactions for RNA: ENST00000435823.1

COL28A1-203, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL28A1, Length 678 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-203ENST00000435823 FGD4Q96M96 766 aa13.28□□□□□ -0.28
COL28A1-203ENST00000435823 PIGSQ96S52 555 aa13.28□□□□□ -0.28
COL28A1-203ENST00000435823 MPHOSPH6Q99547 160 aaKnown RBP13.28□□□□□ -0.28
COL28A1-203ENST00000435823 SPZ1Q9BXG8 430 aa13.28□□□□□ -0.28
COL28A1-203ENST00000435823 RBM28Q9NW13 759 aaKnown RBP13.28□□□□□ -0.28
COL28A1-203ENST00000435823 CDKN2AIPQ9NXV6 580 aaPredicted RBP13.28□□□□□ -0.28
COL28A1-203ENST00000435823 SEC63Q9UGP8 760 aaKnown RBP13.28□□□□□ -0.28
COL28A1-203ENST00000435823 ZHX1Q9UKY1 873 aaPredicted RBP13.28□□□□□ -0.28
COL28A1-203ENST00000435823 PCDHA1Q9Y5I3 950 aa13.28□□□□□ -0.28
COL28A1-203ENST00000435823 LOC102724159A0A0B4J2E5 919 aa13.27□□□□□ -0.29
COL28A1-203ENST00000435823 PNMA6FA0A0J9YX94 578 aa13.27□□□□□ -0.29
COL28A1-203ENST00000435823 KLF18A0A0U1RQI7 1052 aa13.27□□□□□ -0.29
COL28A1-203ENST00000435823 SOWAHBA6NEL2 793 aa13.27□□□□□ -0.29
COL28A1-203ENST00000435823 B4DLN1 442 aa13.27□□□□□ -0.29
COL28A1-203ENST00000435823 CYTH3O43739 400 aa13.27□□□□□ -0.29
COL28A1-203ENST00000435823 SNAI1O95863 264 aaPredicted RBP13.27□□□□□ -0.29
COL28A1-203ENST00000435823 AKR1A1P14550 325 aa13.27□□□□□ -0.29
COL28A1-203ENST00000435823 CPA1P15085 419 aa13.27□□□□□ -0.29
COL28A1-203ENST00000435823 MRPL12P52815 198 aaKnown RBP13.27□□□□□ -0.29
COL28A1-203ENST00000435823 RPS6P62753 249 aaKnown RBP13.27□□□□□ -0.29
COL28A1-203ENST00000435823 PWP2Q15269 919 aaKnown RBP13.27□□□□□ -0.29
COL28A1-203ENST00000435823 APOA5Q6Q788 366 aa13.27□□□□□ -0.29
COL28A1-203ENST00000435823 Q6ZUG5 572 aa13.27□□□□□ -0.29
COL28A1-203ENST00000435823 NECAB2Q7Z6G3 386 aa13.27□□□□□ -0.29
COL28A1-203ENST00000435823 RAB11FIP4Q86YS3 637 aa13.27□□□□□ -0.29
COL28A1-203ENST00000435823 ABHD16BQ9H3Z7 469 aa13.27□□□□□ -0.29
COL28A1-203ENST00000435823 NAP1L2Q9ULW6 460 aaPredicted RBP13.27□□□□□ -0.29
COL28A1-203ENST00000435823 GOLGA8AA7E2F4 631 aa13.26□□□□□ -0.29
COL28A1-203ENST00000435823 GOLGA8BA8MQT2 603 aa13.26□□□□□ -0.29
COL28A1-203ENST00000435823 PLEKHA8P1O95397 391 aa13.26□□□□□ -0.29
COL28A1-203ENST00000435823 ZNF865P0CJ78 1059 aaPredicted RBP13.26□□□□□ -0.29
COL28A1-203ENST00000435823 RARBP10826 455 aa13.26□□□□□ -0.29
COL28A1-203ENST00000435823 ALDH5A1P51649 535 aaPredicted RBP13.26□□□□□ -0.29
COL28A1-203ENST00000435823 RCAN1P53805 252 aa13.26□□□□□ -0.29
COL28A1-203ENST00000435823 ACVR2BQ13705 512 aa13.26□□□□□ -0.29
COL28A1-203ENST00000435823 RTN1Q16799 776 aa13.26□□□□□ -0.29
COL28A1-203ENST00000435823 SLC35G1Q2M3R5 365 aa13.26□□□□□ -0.29
COL28A1-203ENST00000435823 FRMPD3Q5JV73 1810 aa13.26□□□□□ -0.29
COL28A1-203ENST00000435823 TMTC3Q6ZXV5 915 aa13.26□□□□□ -0.29
COL28A1-203ENST00000435823 RUFY3Q7L099 469 aa13.26□□□□□ -0.29
COL28A1-203ENST00000435823 SRBD1Q8N5C6 995 aaKnown RBP13.26□□□□□ -0.29
COL28A1-203ENST00000435823 PIBF1Q8WXW3 757 aa13.26□□□□□ -0.29
COL28A1-203ENST00000435823 BRF1Q92994 677 aa13.26□□□□□ -0.29
COL28A1-203ENST00000435823 HTATIP2Q9BUP3 242 aa13.26□□□□□ -0.29
COL28A1-203ENST00000435823 BRPF3Q9ULD4 1205 aa13.26□□□□□ -0.29
COL28A1-203ENST00000435823 FAM184BQ9ULE4 1060 aa13.26□□□□□ -0.29
COL28A1-203ENST00000435823 CYP46A1Q9Y6A2 500 aa13.26□□□□□ -0.29
COL28A1-203ENST00000435823 PPP1R11O60927 126 aaPredicted RBP13.25□□□□□ -0.29
COL28A1-203ENST00000435823 CFBP00751 764 aa13.25□□□□□ -0.29
COL28A1-203ENST00000435823 PPP2R5BQ15173 497 aa13.25□□□□□ -0.29
COL28A1-203ENST00000435823 ANO1Q5XXA6 986 aa13.25□□□□□ -0.29
COL28A1-203ENST00000435823 UBE2Q1Q7Z7E8 422 aa13.25□□□□□ -0.29
COL28A1-203ENST00000435823 FBXL16Q8N461 479 aa13.25□□□□□ -0.29
COL28A1-203ENST00000435823 SAMD3Q8N6K7 520 aa13.25□□□□□ -0.29
COL28A1-203ENST00000435823 ARRDC4Q8NCT1 418 aa13.25□□□□□ -0.29
COL28A1-203ENST00000435823 DNERQ8NFT8 737 aa13.25□□□□□ -0.29
COL28A1-203ENST00000435823 PAWRQ96IZ0 340 aaKnown RBP13.25□□□□□ -0.29
COL28A1-203ENST00000435823 PURBQ96QR8 312 aaKnown RBP13.25□□□□□ -0.29
COL28A1-203ENST00000435823 TM6SF1Q9BZW5 370 aa13.25□□□□□ -0.29
COL28A1-203ENST00000435823 C11orf49Q9H6J7 331 aa13.25□□□□□ -0.29
COL28A1-203ENST00000435823 ZSWIM6Q9HCJ5 1215 aa13.25□□□□□ -0.29
COL28A1-203ENST00000435823 MAP3K20Q9NYL2 800 aaKnown RBP13.25□□□□□ -0.29
COL28A1-203ENST00000435823 MCM3APO60318 1980 aa13.25□□□□□ -0.29
COL28A1-203ENST00000435823 BAZ2BQ9UIF8 2168 aaKnown RBP13.24□□□□□ -0.29
COL28A1-203ENST00000435823 ASTN1O14525 1302 aa13.24□□□□□ -0.29
COL28A1-203ENST00000435823 LCTP09848 1927 aa13.24□□□□□ -0.29
COL28A1-203ENST00000435823 CCDC196A0A1B0GTZ2 297 aa13.24□□□□□ -0.29
COL28A1-203ENST00000435823 METAP2P50579 478 aaKnown RBP eCLIP13.24□□□□□ -0.29
COL28A1-203ENST00000435823 ANAPC15P60006 121 aa13.24□□□□□ -0.29
COL28A1-203ENST00000435823 APOBRQ0VD83 1088 aa13.24□□□□□ -0.29
COL28A1-203ENST00000435823 CMTR1Q8N1G2 835 aaKnown RBP13.24□□□□□ -0.29
COL28A1-203ENST00000435823 CCDC82Q8N4S0 544 aa13.24□□□□□ -0.29
COL28A1-203ENST00000435823 MORC4Q8TE76 937 aa13.24□□□□□ -0.29
COL28A1-203ENST00000435823 DIS3LQ8TF46 1054 aaKnown RBP13.24□□□□□ -0.29
COL28A1-203ENST00000435823 VTA1Q9NP79 307 aa13.24□□□□□ -0.29
COL28A1-203ENST00000435823 XPNPEP3Q9NQH7 507 aa13.24□□□□□ -0.29
COL28A1-203ENST00000435823 KBTBD13C9JR72 458 aa13.23□□□□□ -0.29
COL28A1-203ENST00000435823 GCOM1H8Y6P7 765 aaPredicted RBP13.23□□□□□ -0.29
COL28A1-203ENST00000435823 DNM1LO00429 736 aa13.23□□□□□ -0.29
COL28A1-203ENST00000435823 POLR2MP0CAP2 368 aa13.23□□□□□ -0.29
COL28A1-203ENST00000435823 PDE4DQ08499 809 aa13.23□□□□□ -0.29
COL28A1-203ENST00000435823 CCDC144BQ3MJ40 725 aa13.23□□□□□ -0.29
COL28A1-203ENST00000435823 EEPD1Q7L9B9 569 aa13.23□□□□□ -0.29
COL28A1-203ENST00000435823 RNF180Q86T96 592 aa13.23□□□□□ -0.29
COL28A1-203ENST00000435823 SYTL5Q8TDW5 730 aaPredicted RBP13.23□□□□□ -0.29
COL28A1-203ENST00000435823 TBC1D5Q92609 795 aa13.23□□□□□ -0.29
COL28A1-203ENST00000435823 AGXT2Q9BYV1 514 aa13.23□□□□□ -0.29
COL28A1-203ENST00000435823 UPF3BQ9BZI7 483 aaKnown RBP13.23□□□□□ -0.29
COL28A1-203ENST00000435823 SPC25Q9HBM1 224 aa13.23□□□□□ -0.29
COL28A1-203ENST00000435823 DUSP11O75319 330 aaKnown RBP13.22□□□□□ -0.29
COL28A1-203ENST00000435823 MNX1P50219 401 aaPredicted RBP13.22□□□□□ -0.29
COL28A1-203ENST00000435823 HSD17B4P51659 736 aa13.22□□□□□ -0.29
COL28A1-203ENST00000435823 GHRHRQ02643 423 aa13.22□□□□□ -0.29
COL28A1-203ENST00000435823 GJC2Q5T442 439 aaPredicted RBP13.22□□□□□ -0.29
COL28A1-203ENST00000435823 ARHGEF16Q5VV41 709 aa13.22□□□□□ -0.29
COL28A1-203ENST00000435823 NOL8Q76FK4 1167 aaKnown RBP13.22□□□□□ -0.29
COL28A1-203ENST00000435823 FBXO16Q8IX29 292 aaPredicted RBP13.22□□□□□ -0.29
COL28A1-203ENST00000435823 NSUN6Q8TEA1 469 aaKnown RBP13.22□□□□□ -0.29
COL28A1-203ENST00000435823 DPF3Q92784 378 aa13.22□□□□□ -0.29
COL28A1-203ENST00000435823 CUL5Q93034 780 aa13.22□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms