RNA–Protein interactions for RNA: ENST00000429895.5

PTPRF-206, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 6,312 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-206ENST00000429895 GARSP41250 739 aaKnown RBP16.81■□□□□ 0.28
PTPRF-206ENST00000429895 CCDC38Q502W7 563 aa16.81■□□□□ 0.28
PTPRF-206ENST00000429895 BAG5Q9UL15 447 aa16.81■□□□□ 0.28
PTPRF-206ENST00000429895 MESDQ14696 234 aa16.81■□□□□ 0.28
PTPRF-206ENST00000429895 FAM182BQ5T319 152 aa16.81■□□□□ 0.28
PTPRF-206ENST00000429895 ZNF653Q96CK0 615 aa16.81■□□□□ 0.28
PTPRF-206ENST00000429895 CLIC4Q9Y696 253 aa16.81■□□□□ 0.28
PTPRF-206ENST00000429895 UBN2Q6ZU65 1347 aa16.81■□□□□ 0.28
PTPRF-206ENST00000429895 DDAH1O94760 285 aa16.81■□□□□ 0.28
PTPRF-206ENST00000429895 PTGDRQ13258 359 aa16.81■□□□□ 0.28
PTPRF-206ENST00000429895 METTL23Q86XA0 190 aa16.81■□□□□ 0.28
PTPRF-206ENST00000429895 FAM149B1Q96BN6 582 aa16.81■□□□□ 0.28
PTPRF-206ENST00000429895 IQCDQ96DY2 449 aa16.81■□□□□ 0.28
PTPRF-206ENST00000429895 SNX25Q9H3E2 840 aa16.81■□□□□ 0.28
PTPRF-206ENST00000429895 MED23Q9ULK4 1368 aa16.81■□□□□ 0.28
PTPRF-206ENST00000429895 FGAP02671 866 aa16.81■□□□□ 0.28
PTPRF-206ENST00000429895 ADORA1P30542 326 aa16.81■□□□□ 0.28
PTPRF-206ENST00000429895 ARHGAP25P42331 645 aa16.81■□□□□ 0.28
PTPRF-206ENST00000429895 PHKA1P46020 1223 aa16.81■□□□□ 0.28
PTPRF-206ENST00000429895 FAM26FQ5R3K3 315 aa16.81■□□□□ 0.28
PTPRF-206ENST00000429895 ZBTB33Q86T24 672 aa16.81■□□□□ 0.28
PTPRF-206ENST00000429895 RASGRP4Q8TDF6 673 aa16.81■□□□□ 0.28
PTPRF-206ENST00000429895 MIS12Q9H081 205 aa16.81■□□□□ 0.28
PTPRF-206ENST00000429895 QTRT2Q9H974 415 aaKnown RBP16.81■□□□□ 0.28
PTPRF-206ENST00000429895 UBN1Q9NPG3 1134 aa16.81■□□□□ 0.28
PTPRF-206ENST00000429895 KLHL14Q9P2G3 628 aa16.81■□□□□ 0.28
PTPRF-206ENST00000429895 BCAP29Q9UHQ4 241 aa16.81■□□□□ 0.28
PTPRF-206ENST00000429895 TPCN1Q9ULQ1 816 aa16.81■□□□□ 0.28
PTPRF-206ENST00000429895 POC1B-GALNT4F8VUJ3 575 aa16.8■□□□□ 0.28
PTPRF-206ENST00000429895 PTPREP23469 700 aa16.8■□□□□ 0.28
PTPRF-206ENST00000429895 SESN3P58005 492 aa16.8■□□□□ 0.28
PTPRF-206ENST00000429895 PCIF1Q9H4Z3 704 aa16.8■□□□□ 0.28
PTPRF-206ENST00000429895 ABCC10Q5T3U5 1492 aa16.8■□□□□ 0.28
PTPRF-206ENST00000429895 CRKLP46109 303 aaKnown RBP16.8■□□□□ 0.28
PTPRF-206ENST00000429895 GNGT1P63211 74 aa16.8■□□□□ 0.28
PTPRF-206ENST00000429895 MUM1Q2TAK8 710 aa16.8■□□□□ 0.28
PTPRF-206ENST00000429895 CCDC93Q567U6 631 aa16.8■□□□□ 0.28
PTPRF-206ENST00000429895 ANKRD13CQ8N6S4 541 aa16.8■□□□□ 0.28
PTPRF-206ENST00000429895 NLRP7Q8WX94 980 aa16.8■□□□□ 0.28
PTPRF-206ENST00000429895 CCDC51Q96ER9 411 aa16.8■□□□□ 0.28
PTPRF-206ENST00000429895 GADD45GIP1Q8TAE8 222 aaPredicted RBP16.8■□□□□ 0.28
PTPRF-206ENST00000429895 HVCN1Q96D96 273 aa16.8■□□□□ 0.28
PTPRF-206ENST00000429895 EAF2Q96CJ1 260 aaPredicted RBP16.8■□□□□ 0.28
PTPRF-206ENST00000429895 LMNB1P20700 586 aa16.8■□□□□ 0.28
PTPRF-206ENST00000429895 OSTNP61366 133 aa16.8■□□□□ 0.28
PTPRF-206ENST00000429895 CCNA1P78396 465 aa16.8■□□□□ 0.28
PTPRF-206ENST00000429895 PTK2Q05397 1052 aa16.8■□□□□ 0.28
PTPRF-206ENST00000429895 EXOC3L4Q17RC7 722 aa16.8■□□□□ 0.28
PTPRF-206ENST00000429895 TRIM68Q6AZZ1 485 aa16.8■□□□□ 0.28
PTPRF-206ENST00000429895 KIAA1841Q6NSI8 718 aa16.8■□□□□ 0.28
PTPRF-206ENST00000429895 BICRAQ9NZM4 1560 aa16.8■□□□□ 0.28
PTPRF-206ENST00000429895 GOLGA8CPA6NN73 597 aa16.79■□□□□ 0.28
PTPRF-206ENST00000429895 GTPBP6O43824 516 aaPredicted RBP16.79■□□□□ 0.28
PTPRF-206ENST00000429895 KCNQ4P56696 695 aa16.79■□□□□ 0.28
PTPRF-206ENST00000429895 CCNYQ8ND76 341 aa16.79■□□□□ 0.28
PTPRF-206ENST00000429895 ATP6V1E2Q96A05 226 aa16.79■□□□□ 0.28
PTPRF-206ENST00000429895 FRMD4AQ9P2Q2 1039 aaPredicted RBP16.79■□□□□ 0.28
PTPRF-206ENST00000429895 A6NNZ2 444 aa16.79■□□□□ 0.28
PTPRF-206ENST00000429895 MFAP3P55082 362 aa16.79■□□□□ 0.28
PTPRF-206ENST00000429895 RASSF7Q02833 373 aa16.79■□□□□ 0.28
PTPRF-206ENST00000429895 DBN1Q16643 649 aa16.79■□□□□ 0.28
PTPRF-206ENST00000429895 TUBB8Q3ZCM7 444 aa16.79■□□□□ 0.28
PTPRF-206ENST00000429895 PDZD8Q8NEN9 1154 aa16.79■□□□□ 0.28
PTPRF-206ENST00000429895 PUS3Q9BZE2 481 aaKnown RBP16.79■□□□□ 0.28
PTPRF-206ENST00000429895 LMBRD1Q9NUN5 540 aa16.79■□□□□ 0.28
PTPRF-206ENST00000429895 UGGT2Q9NYU1 1516 aa16.79■□□□□ 0.28
PTPRF-206ENST00000429895 RASSF2P50749 326 aa16.79■□□□□ 0.28
PTPRF-206ENST00000429895 DYNLL1P63167 89 aaKnown RBP16.79■□□□□ 0.28
PTPRF-206ENST00000429895 MIS18BP1Q6P0N0 1132 aa16.79■□□□□ 0.28
PTPRF-206ENST00000429895 GOLGA8SH3BPF8 625 aa16.79■□□□□ 0.28
PTPRF-206ENST00000429895 SMIM24O75264 130 aa16.79■□□□□ 0.28
PTPRF-206ENST00000429895 ARHGAP4P98171 946 aa16.79■□□□□ 0.28
PTPRF-206ENST00000429895 SNX1Q13596 522 aa16.79■□□□□ 0.28
PTPRF-206ENST00000429895 C7orf31Q8N865 590 aa16.79■□□□□ 0.28
PTPRF-206ENST00000429895 FANCLQ9NW38 375 aa16.79■□□□□ 0.28
PTPRF-206ENST00000429895 FIS1Q9Y3D6 152 aa16.79■□□□□ 0.28
PTPRF-206ENST00000429895 PPFIA4O75335 1185 aa16.79■□□□□ 0.28
PTPRF-206ENST00000429895 ADCY1Q08828 1119 aa16.79■□□□□ 0.28
PTPRF-206ENST00000429895 LRRC41Q15345 812 aa16.79■□□□□ 0.28
PTPRF-206ENST00000429895 ACTN1P12814 892 aa16.78■□□□□ 0.28
PTPRF-206ENST00000429895 RETREG2Q8NC44 543 aa16.78■□□□□ 0.28
PTPRF-206ENST00000429895 SLC38A10Q9HBR0 1119 aa16.78■□□□□ 0.28
PTPRF-206ENST00000429895 KMT5AQ9NQR1 393 aa16.78■□□□□ 0.28
PTPRF-206ENST00000429895 MEIS1O00470 390 aa16.78■□□□□ 0.28
PTPRF-206ENST00000429895 PDE1BQ01064 536 aa16.78■□□□□ 0.28
PTPRF-206ENST00000429895 WHAMMP3Q1A5X7 153 aa16.78■□□□□ 0.28
PTPRF-206ENST00000429895 VCX3AQ9NNX9 186 aa16.78■□□□□ 0.28
PTPRF-206ENST00000429895 PFKFB2O60825 505 aa16.78■□□□□ 0.28
PTPRF-206ENST00000429895 H2AFZP0C0S5 128 aa16.78■□□□□ 0.28
PTPRF-206ENST00000429895 ZSCAN20P17040 1043 aaPredicted RBP16.78■□□□□ 0.28
PTPRF-206ENST00000429895 DYNLT1P63172 113 aa16.78■□□□□ 0.28
PTPRF-206ENST00000429895 H2AFVQ71UI9 128 aa16.78■□□□□ 0.28
PTPRF-206ENST00000429895 CDKL2Q92772 493 aa16.78■□□□□ 0.28
PTPRF-206ENST00000429895 SPDL1Q96EA4 605 aa16.78■□□□□ 0.28
PTPRF-206ENST00000429895 AMNQ9BXJ7 453 aa16.78■□□□□ 0.28
PTPRF-206ENST00000429895 METTL14Q9HCE5 456 aaKnown RBP16.78■□□□□ 0.28
PTPRF-206ENST00000429895 PPP2R2CQ9Y2T4 447 aa16.78■□□□□ 0.28
PTPRF-206ENST00000429895 BNIP3LO60238 219 aa16.78■□□□□ 0.28
PTPRF-206ENST00000429895 NDUFA8P51970 172 aa16.78■□□□□ 0.28
PTPRF-206ENST00000429895 TTC19Q6DKK2 380 aaPredicted RBP16.78■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms