RNA–Protein interactions for RNA: ENST00000425436.7

SHOX2-202, Transcript of short stature homeobox 2, humanhuman

TSL 5 BASIC

Gene SHOX2, Length 1,513 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2-202ENST00000425436 GRPEL1Q9HAV7 217 aa17.93■□□□□ 0.46
SHOX2-202ENST00000425436 GDPD2Q9HCC8 539 aa17.93■□□□□ 0.46
SHOX2-202ENST00000425436 GABRQQ9UN88 632 aa17.93■□□□□ 0.46
SHOX2-202ENST00000425436 ZNFX1Q9P2E3 1918 aaKnown RBP17.93■□□□□ 0.46
SHOX2-202ENST00000425436 PNMA6FA0A0J9YX94 578 aa17.93■□□□□ 0.46
SHOX2-202ENST00000425436 NTRK3Q16288 839 aa17.93■□□□□ 0.46
SHOX2-202ENST00000425436 FERMT3Q86UX7 667 aa17.93■□□□□ 0.46
SHOX2-202ENST00000425436 RNF146Q9NTX7 359 aa17.93■□□□□ 0.46
SHOX2-202ENST00000425436 CNTNAP5Q8WYK1 1306 aa17.92■□□□□ 0.46
SHOX2-202ENST00000425436 GOLGA6L4A6NEF3 574 aa17.92■□□□□ 0.46
SHOX2-202ENST00000425436 FDPSP14324 419 aaKnown RBP17.92■□□□□ 0.46
SHOX2-202ENST00000425436 PTPREP23469 700 aa17.92■□□□□ 0.46
SHOX2-202ENST00000425436 OTOP1Q7RTM1 612 aa17.92■□□□□ 0.46
SHOX2-202ENST00000425436 FBXO18Q8NFZ0 1043 aa17.92■□□□□ 0.46
SHOX2-202ENST00000425436 SPATA32Q96LK8 384 aa17.92■□□□□ 0.46
SHOX2-202ENST00000425436 AMNQ9BXJ7 453 aa17.92■□□□□ 0.46
SHOX2-202ENST00000425436 PRDM10Q9NQV6 1147 aa17.92■□□□□ 0.46
SHOX2-202ENST00000425436 TMEM63CQ9P1W3 806 aa17.92■□□□□ 0.46
SHOX2-202ENST00000425436 PCDHA1Q9Y5I3 950 aa17.92■□□□□ 0.46
SHOX2-202ENST00000425436 IVNS1ABPQ9Y6Y0 642 aa17.92■□□□□ 0.46
SHOX2-202ENST00000425436 PLXNB2O15031 1838 aa17.91■□□□□ 0.46
SHOX2-202ENST00000425436 GADD45BO75293 160 aaPredicted RBP17.91■□□□□ 0.46
SHOX2-202ENST00000425436 PRKCZQ05513 592 aa17.91■□□□□ 0.46
SHOX2-202ENST00000425436 ARHGEF6Q15052 776 aa17.91■□□□□ 0.46
SHOX2-202ENST00000425436 CCDC183Q5T5S1 534 aa17.91■□□□□ 0.46
SHOX2-202ENST00000425436 LRSAM1Q6UWE0 723 aa17.91■□□□□ 0.46
SHOX2-202ENST00000425436 BRAPQ7Z569 592 aa17.91■□□□□ 0.46
SHOX2-202ENST00000425436 CHST13Q8NET6 341 aa17.91■□□□□ 0.46
SHOX2-202ENST00000425436 MMP19Q99542 508 aa17.91■□□□□ 0.46
SHOX2-202ENST00000425436 SLC26A6Q9BXS9 759 aa17.91■□□□□ 0.46
SHOX2-202ENST00000425436 RNF39Q9H2S5 420 aa17.91■□□□□ 0.46
SHOX2-202ENST00000425436 STK36Q9NRP7 1315 aa17.91■□□□□ 0.46
SHOX2-202ENST00000425436 SEC63Q9UGP8 760 aaKnown RBP17.91■□□□□ 0.46
SHOX2-202ENST00000425436 GJD2Q9UKL4 321 aa17.91■□□□□ 0.46
SHOX2-202ENST00000425436 CENPFP49454 3210 aa17.91■□□□□ 0.46
SHOX2-202ENST00000425436 NFIBO00712 420 aa17.9■□□□□ 0.46
SHOX2-202ENST00000425436 FCER1AP12319 257 aa17.9■□□□□ 0.46
SHOX2-202ENST00000425436 IFNAR1P17181 557 aa17.9■□□□□ 0.46
SHOX2-202ENST00000425436 COPB2P35606 906 aa17.9■□□□□ 0.46
SHOX2-202ENST00000425436 FLT3LGP49771 235 aa17.9■□□□□ 0.46
SHOX2-202ENST00000425436 TKFCQ3LXA3 575 aa17.9■□□□□ 0.46
SHOX2-202ENST00000425436 CLEC4DQ8WXI8 215 aa17.9■□□□□ 0.46
SHOX2-202ENST00000425436 ACAD9Q9H845 621 aa17.9■□□□□ 0.46
SHOX2-202ENST00000425436 SRRDQ9UH36 339 aa17.9■□□□□ 0.46
SHOX2-202ENST00000425436 STRNO43815 780 aa17.89■□□□□ 0.45
SHOX2-202ENST00000425436 PGK2P07205 417 aa17.89■□□□□ 0.45
SHOX2-202ENST00000425436 XRCC6P12956 609 aaKnown RBP eCLIP17.89■□□□□ 0.45
SHOX2-202ENST00000425436 CYP2B6P20813 491 aa17.89■□□□□ 0.45
SHOX2-202ENST00000425436 HOXD10P28358 340 aa17.89■□□□□ 0.45
SHOX2-202ENST00000425436 ADORA2AP29274 412 aa17.89■□□□□ 0.45
SHOX2-202ENST00000425436 SSRP1Q08945 709 aaKnown RBP17.89■□□□□ 0.45
SHOX2-202ENST00000425436 KCTD2Q14681 263 aa17.89■□□□□ 0.45
SHOX2-202ENST00000425436 MORN1Q5T089 497 aa17.89■□□□□ 0.45
SHOX2-202ENST00000425436 CTU1Q7Z7A3 348 aaKnown RBP17.89■□□□□ 0.45
SHOX2-202ENST00000425436 TRIM22Q8IYM9 498 aa17.89■□□□□ 0.45
SHOX2-202ENST00000425436 ANKRD35Q8N283 1001 aa17.89■□□□□ 0.45
SHOX2-202ENST00000425436 TBC1D5Q92609 795 aa17.89■□□□□ 0.45
SHOX2-202ENST00000425436 GPKOWQ92917 476 aaPredicted RBP eCLIP17.89■□□□□ 0.45
SHOX2-202ENST00000425436 NUDT12Q9BQG2 462 aa17.89■□□□□ 0.45
SHOX2-202ENST00000425436 HTTP42858 3142 aa17.88■□□□□ 0.45
SHOX2-202ENST00000425436 ABCB11O95342 1321 aa17.88■□□□□ 0.45
SHOX2-202ENST00000425436 SLC15A5A6NIM6 579 aa17.88■□□□□ 0.45
SHOX2-202ENST00000425436 PRPF3O43395 683 aaKnown RBP17.88■□□□□ 0.45
SHOX2-202ENST00000425436 COBLO75128 1261 aa17.88■□□□□ 0.45
SHOX2-202ENST00000425436 GNRH1P01148 92 aa17.88■□□□□ 0.45
SHOX2-202ENST00000425436 TRIM29Q14134 588 aa17.88■□□□□ 0.45
SHOX2-202ENST00000425436 GRB14Q14449 540 aa17.88■□□□□ 0.45
SHOX2-202ENST00000425436 NSMFQ6X4W1 530 aa17.88■□□□□ 0.45
SHOX2-202ENST00000425436 HEATR3Q7Z4Q2 680 aa17.88■□□□□ 0.45
SHOX2-202ENST00000425436 LEO1Q8WVC0 666 aaPredicted RBP17.88■□□□□ 0.45
SHOX2-202ENST00000425436 ANP32BQ92688 251 aaKnown RBP17.88■□□□□ 0.45
SHOX2-202ENST00000425436 RNF216Q9NWF9 866 aaPredicted RBP17.88■□□□□ 0.45
SHOX2-202ENST00000425436 FBXO40Q9UH90 709 aa17.88■□□□□ 0.45
SHOX2-202ENST00000425436 PNMA2Q9UL42 364 aa17.88■□□□□ 0.45
SHOX2-202ENST00000425436 AKAP17AQ02040 695 aaKnown RBP17.88■□□□□ 0.45
SHOX2-202ENST00000425436 PKN1Q16512 942 aa17.88■□□□□ 0.45
SHOX2-202ENST00000425436 DPP9Q86TI2 863 aa17.88■□□□□ 0.45
SHOX2-202ENST00000425436 GAS2L3Q86XJ1 694 aa17.88■□□□□ 0.45
SHOX2-202ENST00000425436 A1CFQ9NQ94 594 aaKnown RBP17.88■□□□□ 0.45
SHOX2-202ENST00000425436 RBM27Q9P2N5 1060 aaKnown RBP17.88■□□□□ 0.45
SHOX2-202ENST00000425436 RCOR1Q9UKL0 485 aa17.88■□□□□ 0.45
SHOX2-202ENST00000425436 MRPL11Q9Y3B7 192 aaKnown RBP17.88■□□□□ 0.45
SHOX2-202ENST00000425436 MAP2K5Q13163 448 aa17.87■□□□□ 0.45
SHOX2-202ENST00000425436 BAATQ14032 418 aaPredicted RBP17.87■□□□□ 0.45
SHOX2-202ENST00000425436 WWC2Q6AWC2 1192 aa17.87■□□□□ 0.45
SHOX2-202ENST00000425436 USP6NLQ92738 828 aa17.87■□□□□ 0.45
SHOX2-202ENST00000425436 PURBQ96QR8 312 aaKnown RBP17.87■□□□□ 0.45
SHOX2-202ENST00000425436 ALG1Q9BT22 464 aa17.87■□□□□ 0.45
SHOX2-202ENST00000425436 TFIP11Q9UBB9 837 aaKnown RBP17.87■□□□□ 0.45
SHOX2-202ENST00000425436 PTPN22Q9Y2R2 807 aa17.87■□□□□ 0.45
SHOX2-202ENST00000425436 PTCH2Q9Y6C5 1203 aa17.87■□□□□ 0.45
SHOX2-202ENST00000425436 OPLAHO14841 1288 aa17.86■□□□□ 0.45
SHOX2-202ENST00000425436 PFKFB3Q16875 520 aaPredicted RBP17.86■□□□□ 0.45
SHOX2-202ENST00000425436 RNF207Q6ZRF8 634 aa17.86■□□□□ 0.45
SHOX2-202ENST00000425436 ABRAQ8N0Z2 381 aa17.86■□□□□ 0.45
SHOX2-202ENST00000425436 NPLOC4Q8TAT6 608 aa17.86■□□□□ 0.45
SHOX2-202ENST00000425436 RAET1EQ8TD07 263 aa17.86■□□□□ 0.45
SHOX2-202ENST00000425436 RNF26Q9BY78 433 aaPredicted RBP17.86■□□□□ 0.45
SHOX2-202ENST00000425436 CYP39A1Q9NYL5 469 aa17.86■□□□□ 0.45
SHOX2-202ENST00000425436 SYCE3A1L190 88 aa17.85■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms