RNA–Protein interactions for RNA: ENST00000425048.1

LINC01040-201, Transcript of long intergenic non-protein coding RNA 1040, humanhuman

TSL 2 BASIC

Gene LINC01040, Length 666 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01040-201ENST00000425048 SH3D21A4FU49 640 aa8.4□□□□□ -1.06
LINC01040-201ENST00000425048 GLI4P10075 376 aa8.4□□□□□ -1.06
LINC01040-201ENST00000425048 NT5DC1Q5TFE4 455 aa8.4□□□□□ -1.06
LINC01040-201ENST00000425048 ZNF526Q8TF50 670 aaPredicted RBP8.4□□□□□ -1.06
LINC01040-201ENST00000425048 SPATA25Q9BR10 227 aa8.4□□□□□ -1.06
LINC01040-201ENST00000425048 PCDHGB7Q9Y5F8 929 aa8.4□□□□□ -1.06
LINC01040-201ENST00000425048 AURKAO14965 403 aa8.39□□□□□ -1.07
LINC01040-201ENST00000425048 CBFA2T2O43439 604 aa8.39□□□□□ -1.07
LINC01040-201ENST00000425048 FANCCQ00597 558 aa8.39□□□□□ -1.07
LINC01040-201ENST00000425048 COL9A2Q14055 689 aaPredicted RBP8.39□□□□□ -1.07
LINC01040-201ENST00000425048 GNPTABQ3T906 1256 aa8.39□□□□□ -1.07
LINC01040-201ENST00000425048 B3GNT8Q7Z7M8 397 aa8.39□□□□□ -1.07
LINC01040-201ENST00000425048 LZTR1Q8N653 840 aa8.39□□□□□ -1.07
LINC01040-201ENST00000425048 CNOT11Q9UKZ1 510 aaKnown RBP8.39□□□□□ -1.07
LINC01040-201ENST00000425048 MC3RP41968 323 aa8.38□□□□□ -1.07
LINC01040-201ENST00000425048 ZXDCQ2QGD7 858 aaPredicted RBP8.38□□□□□ -1.07
LINC01040-201ENST00000425048 HEATR6Q6AI08 1181 aaKnown RBP8.38□□□□□ -1.07
LINC01040-201ENST00000425048 ADAT2Q7Z6V5 191 aaKnown RBP8.38□□□□□ -1.07
LINC01040-201ENST00000425048 TSPAN17Q96FV3 270 aa8.38□□□□□ -1.07
LINC01040-201ENST00000425048 PEX11GQ96HA9 241 aa8.38□□□□□ -1.07
LINC01040-201ENST00000425048 HAUS7Q99871 368 aa8.38□□□□□ -1.07
LINC01040-201ENST00000425048 GBP3Q9H0R5 595 aa8.38□□□□□ -1.07
LINC01040-201ENST00000425048 NUDT5Q9UKK9 219 aa8.38□□□□□ -1.07
LINC01040-201ENST00000425048 PPM1BO75688 479 aa8.37□□□□□ -1.07
LINC01040-201ENST00000425048 TRIM26Q12899 539 aaPredicted RBP8.37□□□□□ -1.07
LINC01040-201ENST00000425048 SLC9A5Q14940 896 aa8.37□□□□□ -1.07
LINC01040-201ENST00000425048 ADCY4Q8NFM4 1077 aa8.37□□□□□ -1.07
LINC01040-201ENST00000425048 MCMBPQ9BTE3 642 aa8.37□□□□□ -1.07
LINC01040-201ENST00000425048 RXFP1Q9HBX9 757 aa8.37□□□□□ -1.07
LINC01040-201ENST00000425048 VAMP4O75379 141 aa8.36□□□□□ -1.07
LINC01040-201ENST00000425048 PMLP29590 882 aa8.36□□□□□ -1.07
LINC01040-201ENST00000425048 SEPHS1P49903 392 aa8.36□□□□□ -1.07
LINC01040-201ENST00000425048 RACK1P63244 317 aaKnown RBP8.36□□□□□ -1.07
LINC01040-201ENST00000425048 FERMT3Q86UX7 667 aa8.36□□□□□ -1.07
LINC01040-201ENST00000425048 CARFQ8N187 725 aa8.36□□□□□ -1.07
LINC01040-201ENST00000425048 NETO2Q8NC67 525 aa8.36□□□□□ -1.07
LINC01040-201ENST00000425048 PHAXQ9H814 394 aaKnown RBP8.36□□□□□ -1.07
LINC01040-201ENST00000425048 DDX41Q9UJV9 622 aaKnown RBP8.36□□□□□ -1.07
LINC01040-201ENST00000425048 RWDD3Q9Y3V2 267 aa8.36□□□□□ -1.07
LINC01040-201ENST00000425048 C2orf71A6NGG8 1288 aa8.35□□□□□ -1.07
LINC01040-201ENST00000425048 ZBTB7AO95365 584 aa8.35□□□□□ -1.07
LINC01040-201ENST00000425048 SLC7A5Q01650 507 aa8.35□□□□□ -1.07
LINC01040-201ENST00000425048 DLX2Q07687 328 aaPredicted RBP8.35□□□□□ -1.07
LINC01040-201ENST00000425048 DPY19L1Q2PZI1 675 aa8.35□□□□□ -1.07
LINC01040-201ENST00000425048 CPA5Q8WXQ8 436 aa8.35□□□□□ -1.07
LINC01040-201ENST00000425048 SPATA32Q96LK8 384 aa8.35□□□□□ -1.07
LINC01040-201ENST00000425048 KLHL25Q9H0H3 589 aa8.35□□□□□ -1.07
LINC01040-201ENST00000425048 BCAS3Q9H6U6 928 aa8.35□□□□□ -1.07
LINC01040-201ENST00000425048 GINM1Q9NU53 330 aa8.35□□□□□ -1.07
LINC01040-201ENST00000425048 K7ESM1 405 aa8.34□□□□□ -1.07
LINC01040-201ENST00000425048 STXBP3O00186 592 aa8.34□□□□□ -1.07
LINC01040-201ENST00000425048 PPP1R11O60927 126 aaPredicted RBP8.34□□□□□ -1.07
LINC01040-201ENST00000425048 EIF6P56537 245 aaKnown RBP8.34□□□□□ -1.07
LINC01040-201ENST00000425048 RBM10P98175 930 aaKnown RBP8.34□□□□□ -1.07
LINC01040-201ENST00000425048 AMPD2Q01433 879 aa8.34□□□□□ -1.07
LINC01040-201ENST00000425048 CCDC81Q6ZN84 652 aa8.34□□□□□ -1.07
LINC01040-201ENST00000425048 CPNE8Q86YQ8 564 aa8.34□□□□□ -1.07
LINC01040-201ENST00000425048 USP33Q8TEY7 942 aa8.34□□□□□ -1.07
LINC01040-201ENST00000425048 BACE2Q9Y5Z0 518 aa8.34□□□□□ -1.07
LINC01040-201ENST00000425048 TRBV23OR9-2A0A075B6M9 112 aa8.33□□□□□ -1.08
LINC01040-201ENST00000425048 NOBOXO60393 691 aa8.33□□□□□ -1.08
LINC01040-201ENST00000425048 PAMP19021 973 aa8.33□□□□□ -1.08
LINC01040-201ENST00000425048 SARSP49591 514 aaKnown RBP8.33□□□□□ -1.08
LINC01040-201ENST00000425048 CACNB2Q08289 660 aaPredicted RBP8.33□□□□□ -1.08
LINC01040-201ENST00000425048 HHIPL2Q6UWX4 724 aa8.33□□□□□ -1.08
LINC01040-201ENST00000425048 TTLL7Q6ZT98 887 aa8.33□□□□□ -1.08
LINC01040-201ENST00000425048 ZNF654Q8IZM8 581 aa8.33□□□□□ -1.08
LINC01040-201ENST00000425048 ARHGEF39Q8N4T4 335 aa8.33□□□□□ -1.08
LINC01040-201ENST00000425048 SMARCC2Q8TAQ2 1214 aa8.33□□□□□ -1.08
LINC01040-201ENST00000425048 DDX1Q92499 740 aaKnown RBP8.33□□□□□ -1.08
LINC01040-201ENST00000425048 RCC1LQ96I51 464 aaKnown RBP8.33□□□□□ -1.08
LINC01040-201ENST00000425048 FGD4Q96M96 766 aa8.33□□□□□ -1.08
LINC01040-201ENST00000425048 GPR20Q99678 358 aa8.33□□□□□ -1.08
LINC01040-201ENST00000425048 MTA3Q9BTC8 594 aa8.33□□□□□ -1.08
LINC01040-201ENST00000425048 PALD1Q9ULE6 856 aa8.33□□□□□ -1.08
LINC01040-201ENST00000425048 PCDHB10Q9UN67 800 aa8.33□□□□□ -1.08
LINC01040-201ENST00000425048 EPHX1P07099 455 aa8.32□□□□□ -1.08
LINC01040-201ENST00000425048 GJA9P57773 515 aa8.32□□□□□ -1.08
LINC01040-201ENST00000425048 C19orf47Q8N9M1 422 aaKnown RBP8.32□□□□□ -1.08
LINC01040-201ENST00000425048 OR6P1Q8NGX9 317 aa8.32□□□□□ -1.08
LINC01040-201ENST00000425048 NTMQ9P121 344 aa8.32□□□□□ -1.08
LINC01040-201ENST00000425048 GULP1Q9UBP9 304 aa8.32□□□□□ -1.08
LINC01040-201ENST00000425048 NPHP3-ACAD11A0A0J9YXS1 232 aa8.31□□□□□ -1.08
LINC01040-201ENST00000425048 A0A1W2PQH9 124 aa8.31□□□□□ -1.08
LINC01040-201ENST00000425048 NPHS1O60500 1241 aa8.31□□□□□ -1.08
LINC01040-201ENST00000425048 INSRRP14616 1297 aa8.31□□□□□ -1.08
LINC01040-201ENST00000425048 GIPRP48546 466 aa8.31□□□□□ -1.08
LINC01040-201ENST00000425048 PAK2Q13177 524 aa8.31□□□□□ -1.08
LINC01040-201ENST00000425048 GRB10Q13322 594 aa8.31□□□□□ -1.08
LINC01040-201ENST00000425048 ZNF827Q17R98 1081 aa8.31□□□□□ -1.08
LINC01040-201ENST00000425048 NOX5Q96PH1 765 aa8.31□□□□□ -1.08
LINC01040-201ENST00000425048 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP8.31□□□□□ -1.08
LINC01040-201ENST00000425048 FBLN5Q9UBX5 448 aa8.31□□□□□ -1.08
LINC01040-201ENST00000425048 CGGBP1Q9UFW8 167 aaPredicted RBP8.31□□□□□ -1.08
LINC01040-201ENST00000425048 EFR3BQ9Y2G0 817 aa8.31□□□□□ -1.08
LINC01040-201ENST00000425048 SUGT1Q9Y2Z0 365 aa8.31□□□□□ -1.08
LINC01040-201ENST00000425048 CNR2P34972 360 aa8.3□□□□□ -1.08
LINC01040-201ENST00000425048 SOX9P48436 509 aa8.3□□□□□ -1.08
LINC01040-201ENST00000425048 LNPKQ9C0E8 428 aa8.3□□□□□ -1.08
LINC01040-201ENST00000425048 SPATA6Q9NWH7 488 aaPredicted RBP8.3□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 62.5 ms