RNA–Protein interactions for RNA: ENST00000417656.6

SKA1-203, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 2 BASIC

Gene SKA1, Length 1,095 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-203ENST00000417656 UPF2Q9HAU5 1272 aaKnown RBP14.45□□□□□ -0.1
SKA1-203ENST00000417656 NCOA5Q9HCD5 579 aaKnown RBP14.45□□□□□ -0.1
SKA1-203ENST00000417656 DIS3Q9Y2L1 958 aaKnown RBP14.45□□□□□ -0.1
SKA1-203ENST00000417656 MRPL11Q9Y3B7 192 aaKnown RBP14.45□□□□□ -0.1
SKA1-203ENST00000417656 PCDHA1Q9Y5I3 950 aa14.45□□□□□ -0.1
SKA1-203ENST00000417656 ASTN1O14525 1302 aa14.44□□□□□ -0.1
SKA1-203ENST00000417656 SOWAHBA6NEL2 793 aa14.44□□□□□ -0.1
SKA1-203ENST00000417656 OPLAHO14841 1288 aa14.44□□□□□ -0.1
SKA1-203ENST00000417656 ADD1P35611 737 aaKnown RBP14.44□□□□□ -0.1
SKA1-203ENST00000417656 NEK4P51957 841 aa14.44□□□□□ -0.1
SKA1-203ENST00000417656 RPS6P62753 249 aaKnown RBP14.44□□□□□ -0.1
SKA1-203ENST00000417656 CCT2P78371 535 aaKnown RBP14.44□□□□□ -0.1
SKA1-203ENST00000417656 STK3Q13188 491 aa14.44□□□□□ -0.1
SKA1-203ENST00000417656 KIF2CQ99661 725 aa14.44□□□□□ -0.1
SKA1-203ENST00000417656 XRN2Q9H0D6 950 aaKnown RBP eCLIP14.44□□□□□ -0.1
SKA1-203ENST00000417656 RNF208Q9H0X6 261 aa14.44□□□□□ -0.1
SKA1-203ENST00000417656 CCDC196A0A1B0GTZ2 297 aa14.43□□□□□ -0.1
SKA1-203ENST00000417656 POTEFA5A3E0 1075 aa14.43□□□□□ -0.1
SKA1-203ENST00000417656 CYBAP13498 195 aa14.43□□□□□ -0.1
SKA1-203ENST00000417656 CCND3P30281 292 aaPredicted RBP14.43□□□□□ -0.1
SKA1-203ENST00000417656 ZNF467Q7Z7K2 595 aaPredicted RBP14.43□□□□□ -0.1
SKA1-203ENST00000417656 TRPV1Q8NER1 839 aa14.43□□□□□ -0.1
SKA1-203ENST00000417656 TBC1D5Q92609 795 aa14.43□□□□□ -0.1
SKA1-203ENST00000417656 GPKOWQ92917 476 aaPredicted RBP eCLIP14.43□□□□□ -0.18e-6■■■□□ 18.6
SKA1-203ENST00000417656 TINF2Q9BSI4 451 aa14.43□□□□□ -0.1
SKA1-203ENST00000417656 BACH2Q9BYV9 841 aa14.43□□□□□ -0.1
SKA1-203ENST00000417656 ALDH8A1Q9H2A2 487 aaPredicted RBP14.43□□□□□ -0.1
SKA1-203ENST00000417656 TPCN1Q9ULQ1 816 aa14.43□□□□□ -0.1
SKA1-203ENST00000417656 DDX49Q9Y6V7 483 aaKnown RBP14.43□□□□□ -0.1
SKA1-203ENST00000417656 RPTORQ8N122 1335 aa14.42□□□□□ -0.1
SKA1-203ENST00000417656 PPFIA3O75145 1194 aa14.42□□□□□ -0.1
SKA1-203ENST00000417656 TRAF1Q13077 416 aa14.42□□□□□ -0.1
SKA1-203ENST00000417656 PPP2R5BQ15173 497 aa14.42□□□□□ -0.1
SKA1-203ENST00000417656 ARMCX2Q7L311 632 aa14.42□□□□□ -0.1
SKA1-203ENST00000417656 HEATR3Q7Z4Q2 680 aa14.42□□□□□ -0.1
SKA1-203ENST00000417656 MCF2L2Q86YR7 1114 aa14.42□□□□□ -0.1
SKA1-203ENST00000417656 ZNF274Q96GC6 653 aaPredicted RBP14.42□□□□□ -0.1
SKA1-203ENST00000417656 TMEM106CQ9BVX2 250 aa14.42□□□□□ -0.1
SKA1-203ENST00000417656 HMX1Q9NP08 348 aaPredicted RBP14.42□□□□□ -0.1
SKA1-203ENST00000417656 PAK6Q9NQU5 681 aaPredicted RBP14.42□□□□□ -0.1
SKA1-203ENST00000417656 COL20A1Q9P218 1284 aa14.42□□□□□ -0.1
SKA1-203ENST00000417656 SYNGAP1Q96PV0 1343 aa14.41□□□□□ -0.1
SKA1-203ENST00000417656 LARGE1O95461 756 aa14.41□□□□□ -0.1
SKA1-203ENST00000417656 CFBP00751 764 aa14.41□□□□□ -0.1
SKA1-203ENST00000417656 ALDH5A1P51649 535 aaPredicted RBP14.41□□□□□ -0.1
SKA1-203ENST00000417656 ANKRD1Q15327 319 aa14.41□□□□□ -0.1
SKA1-203ENST00000417656 NTRK3Q16288 839 aa14.41□□□□□ -0.1
SKA1-203ENST00000417656 PRAMEF19Q5SWL8 479 aa14.41□□□□□ -0.1
SKA1-203ENST00000417656 WWC2Q6AWC2 1192 aa14.41□□□□□ -0.1
SKA1-203ENST00000417656 MAMDC4Q6UXC1 1216 aa14.41□□□□□ -0.1
SKA1-203ENST00000417656 MSL3Q8N5Y2 521 aaKnown RBP14.41□□□□□ -0.1
SKA1-203ENST00000417656 RGS22Q8NE09 1264 aa14.41□□□□□ -0.1
SKA1-203ENST00000417656 SYTL5Q8TDW5 730 aaPredicted RBP14.41□□□□□ -0.1
SKA1-203ENST00000417656 PHKBQ93100 1093 aa14.41□□□□□ -0.1
SKA1-203ENST00000417656 TBC1D32Q96NH3 1257 aa14.41□□□□□ -0.1
SKA1-203ENST00000417656 DEFB118Q96PH6 123 aa14.41□□□□□ -0.1
SKA1-203ENST00000417656 CDKN2AIPQ9NXV6 580 aaPredicted RBP14.41□□□□□ -0.1
SKA1-203ENST00000417656 SNAI1O95863 264 aaPredicted RBP14.4□□□□□ -0.1
SKA1-203ENST00000417656 CNGA1P29973 690 aa14.4□□□□□ -0.1
SKA1-203ENST00000417656 HOXA13P31271 388 aaPredicted RBP14.4□□□□□ -0.1
SKA1-203ENST00000417656 HSD17B4P51659 736 aa14.4□□□□□ -0.1
SKA1-203ENST00000417656 GHRHRQ02643 423 aa14.4□□□□□ -0.1
SKA1-203ENST00000417656 SCRN1Q12765 414 aa14.4□□□□□ -0.1
SKA1-203ENST00000417656 SHISA4Q96DD7 197 aa14.4□□□□□ -0.1
SKA1-203ENST00000417656 SLC26A6Q9BXS9 759 aa14.4□□□□□ -0.1
SKA1-203ENST00000417656 SLKQ9H2G2 1235 aaPredicted RBP14.4□□□□□ -0.1
SKA1-203ENST00000417656 ADD3Q9UEY8 706 aaKnown RBP14.4□□□□□ -0.1
SKA1-203ENST00000417656 ZHX1Q9UKY1 873 aaPredicted RBP14.4□□□□□ -0.1
SKA1-203ENST00000417656 CNPY2Q9Y2B0 182 aa14.4□□□□□ -0.1
SKA1-203ENST00000417656 V9GY48 417 aaPredicted RBP14.4□□□□□ -0.1
SKA1-203ENST00000417656 ASB14A6NK59 587 aa14.39□□□□□ -0.11
SKA1-203ENST00000417656 CPLX1O14810 134 aa14.39□□□□□ -0.11
SKA1-203ENST00000417656 PFKFB2O60825 505 aa14.39□□□□□ -0.11
SKA1-203ENST00000417656 GJB1P08034 283 aa14.39□□□□□ -0.11
SKA1-203ENST00000417656 IFNAR1P17181 557 aa14.39□□□□□ -0.11
SKA1-203ENST00000417656 RABEP1Q15276 862 aa14.39□□□□□ -0.11
SKA1-203ENST00000417656 TYW1BQ6NUM6 668 aa14.39□□□□□ -0.11
SKA1-203ENST00000417656 U2AF1L4Q8WU68 220 aaKnown RBP14.39□□□□□ -0.11
SKA1-203ENST00000417656 TAAR1Q96RJ0 339 aa14.39□□□□□ -0.11
SKA1-203ENST00000417656 KIAA0100Q14667 2235 aaKnown RBP14.39□□□□□ -0.11
SKA1-203ENST00000417656 BRCA2P51587 3418 aa14.38□□□□□ -0.11
SKA1-203ENST00000417656 C19orf67A6NJJ6 358 aa14.38□□□□□ -0.11
SKA1-203ENST00000417656 GCOM1H8Y6P7 765 aaPredicted RBP14.38□□□□□ -0.11
SKA1-203ENST00000417656 STXBP3O00186 592 aa14.38□□□□□ -0.11
SKA1-203ENST00000417656 PRPF3O43395 683 aaKnown RBP14.38□□□□□ -0.11
SKA1-203ENST00000417656 POLR2MP0CAP2 368 aa14.38□□□□□ -0.11
SKA1-203ENST00000417656 ZNF865P0CJ78 1059 aaPredicted RBP14.38□□□□□ -0.11
SKA1-203ENST00000417656 SCG2P13521 617 aa14.38□□□□□ -0.11
SKA1-203ENST00000417656 EN2P19622 333 aaPredicted RBP14.38□□□□□ -0.11
SKA1-203ENST00000417656 GJA8P48165 433 aa14.38□□□□□ -0.11
SKA1-203ENST00000417656 NAPAP54920 295 aa14.38□□□□□ -0.11
SKA1-203ENST00000417656 ME3Q16798 604 aa14.38□□□□□ -0.11
SKA1-203ENST00000417656 PFKFB3Q16875 520 aaPredicted RBP14.38□□□□□ -0.11
SKA1-203ENST00000417656 ANO1Q5XXA6 986 aa14.38□□□□□ -0.11
SKA1-203ENST00000417656 PPP1R18Q6NYC8 613 aa14.38□□□□□ -0.11
SKA1-203ENST00000417656 FBXO16Q8IX29 292 aaPredicted RBP14.38□□□□□ -0.11
SKA1-203ENST00000417656 NECAB1Q8N987 351 aa14.38□□□□□ -0.11
SKA1-203ENST00000417656 DNERQ8NFT8 737 aa14.38□□□□□ -0.11
SKA1-203ENST00000417656 LENG1Q96BZ8 264 aaPredicted RBP14.38□□□□□ -0.11
SKA1-203ENST00000417656 RNF26Q9BY78 433 aaPredicted RBP14.38□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms