RNA–Protein interactions for RNA: ENST00000416649.6

NCKIPSD-204, Transcript of NCK interacting protein with SH3 domain, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene NCKIPSD, Length 2,925 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NCKIPSD-204ENST00000416649 RWDD2AQ9UIY3 292 aa16.31■□□□□ 0.2
NCKIPSD-204ENST00000416649 MYH10P35580 1976 aa16.31■□□□□ 0.2
NCKIPSD-204ENST00000416649 BAZ2BQ9UIF8 2168 aaKnown RBP16.31■□□□□ 0.2
NCKIPSD-204ENST00000416649 BUB1BO60566 1050 aaPredicted RBP16.31■□□□□ 0.2
NCKIPSD-204ENST00000416649 HEXIM1O94992 359 aaKnown RBP16.31■□□□□ 0.2
NCKIPSD-204ENST00000416649 GLI1P08151 1106 aa16.31■□□□□ 0.2
NCKIPSD-204ENST00000416649 PLCB4Q15147 1175 aa16.31■□□□□ 0.2
NCKIPSD-204ENST00000416649 RSRC1Q96IZ7 334 aaKnown RBP16.31■□□□□ 0.2
NCKIPSD-204ENST00000416649 DNAJC7Q99615 494 aa16.31■□□□□ 0.2
NCKIPSD-204ENST00000416649 KIF9Q9HAQ2 790 aa16.31■□□□□ 0.2
NCKIPSD-204ENST00000416649 TBC1D8BQ0IIM8 1120 aa16.3■□□□□ 0.2
NCKIPSD-204ENST00000416649 MYO1EQ12965 1108 aa16.3■□□□□ 0.2
NCKIPSD-204ENST00000416649 QPCTQ16769 361 aa16.3■□□□□ 0.2
NCKIPSD-204ENST00000416649 MSL1Q68DK7 614 aa16.3■□□□□ 0.2
NCKIPSD-204ENST00000416649 CEP120Q8N960 986 aa16.3■□□□□ 0.2
NCKIPSD-204ENST00000416649 TRIM58Q8NG06 486 aa16.3■□□□□ 0.2
NCKIPSD-204ENST00000416649 IGDCC4Q8TDY8 1250 aa16.3■□□□□ 0.2
NCKIPSD-204ENST00000416649 ATP6V1G3Q96LB4 118 aa16.3■□□□□ 0.2
NCKIPSD-204ENST00000416649 FOXP1Q9H334 677 aaPredicted RBP16.3■□□□□ 0.2
NCKIPSD-204ENST00000416649 ACTR5Q9H9F9 607 aaPredicted RBP16.3■□□□□ 0.2
NCKIPSD-204ENST00000416649 WTIPA6NIX2 430 aaPredicted RBP16.3■□□□□ 0.2
NCKIPSD-204ENST00000416649 USO1O60763 962 aaKnown RBP16.3■□□□□ 0.2
NCKIPSD-204ENST00000416649 ZFYP08048 801 aaPredicted RBP16.3■□□□□ 0.2
NCKIPSD-204ENST00000416649 PRCPP42785 496 aa16.3■□□□□ 0.2
NCKIPSD-204ENST00000416649 MAP2K1Q02750 393 aaPredicted RBP16.3■□□□□ 0.2
NCKIPSD-204ENST00000416649 CTDSPL2Q05D32 466 aa16.3■□□□□ 0.2
NCKIPSD-204ENST00000416649 HLTFQ14527 1009 aaKnown RBP eCLIP16.3■□□□□ 0.2
NCKIPSD-204ENST00000416649 RTN1Q16799 776 aa16.3■□□□□ 0.2
NCKIPSD-204ENST00000416649 TYW1BQ6NUM6 668 aa16.3■□□□□ 0.2
NCKIPSD-204ENST00000416649 CCDC50Q8IVM0 306 aa16.3■□□□□ 0.2
NCKIPSD-204ENST00000416649 IFT20Q8IY31 132 aa16.3■□□□□ 0.2
NCKIPSD-204ENST00000416649 LINC00116Q8NCU8 138 aa16.3■□□□□ 0.2
NCKIPSD-204ENST00000416649 OR2W6PQ8NHA6 318 aa16.3■□□□□ 0.2
NCKIPSD-204ENST00000416649 TRIM47Q96LD4 638 aa16.3■□□□□ 0.2
NCKIPSD-204ENST00000416649 CDCA7Q9BWT1 371 aaPredicted RBP16.3■□□□□ 0.2
NCKIPSD-204ENST00000416649 IFIH1Q9BYX4 1025 aaKnown RBP16.3■□□□□ 0.2
NCKIPSD-204ENST00000416649 AATFQ9NY61 560 aaKnown RBP eCLIP16.3■□□□□ 0.2
NCKIPSD-204ENST00000416649 MAGEC2Q9UBF1 373 aaPredicted RBP16.3■□□□□ 0.2
NCKIPSD-204ENST00000416649 CAPN11Q9UMQ6 739 aa16.3■□□□□ 0.2
NCKIPSD-204ENST00000416649 THRAP3Q9Y2W1 955 aaKnown RBP16.3■□□□□ 0.2
NCKIPSD-204ENST00000416649 XDHP47989 1333 aa16.3■□□□□ 0.2
NCKIPSD-204ENST00000416649 IRX1P78414 480 aaPredicted RBP16.29■□□□□ 0.2
NCKIPSD-204ENST00000416649 PPP1R7Q15435 360 aa16.29■□□□□ 0.2
NCKIPSD-204ENST00000416649 TRADDQ15628 312 aa16.29■□□□□ 0.2
NCKIPSD-204ENST00000416649 HIBCHQ6NVY1 386 aaPredicted RBP16.29■□□□□ 0.2
NCKIPSD-204ENST00000416649 SRP68Q9UHB9 627 aaKnown RBP16.29■□□□□ 0.2
NCKIPSD-204ENST00000416649 DOT1LQ8TEK3 1739 aa16.29■□□□□ 0.2
NCKIPSD-204ENST00000416649 EME2A4GXA9 379 aaPredicted RBP16.29■□□□□ 0.2
NCKIPSD-204ENST00000416649 SLC8A1P32418 973 aa16.29■□□□□ 0.2
NCKIPSD-204ENST00000416649 HSPA1LP34931 641 aa16.29■□□□□ 0.2
NCKIPSD-204ENST00000416649 ANKRD20A8PQ5CZ79 823 aa16.29■□□□□ 0.2
NCKIPSD-204ENST00000416649 EARS2Q5JPH6 523 aaKnown RBP16.29■□□□□ 0.2
NCKIPSD-204ENST00000416649 SH3RF1Q7Z6J0 888 aa16.29■□□□□ 0.2
NCKIPSD-204ENST00000416649 PNMA8AQ86V59 439 aaPredicted RBP16.29■□□□□ 0.2
NCKIPSD-204ENST00000416649 IQCKQ8N0W5 287 aa16.29■□□□□ 0.2
NCKIPSD-204ENST00000416649 CAVIN3Q969G5 261 aa16.29■□□□□ 0.2
NCKIPSD-204ENST00000416649 PLAAQ9Y263 795 aa16.29■□□□□ 0.2
NCKIPSD-204ENST00000416649 PLCH1Q4KWH8 1693 aa16.29■□□□□ 0.2
NCKIPSD-204ENST00000416649 ENO4A6NNW6 628 aa16.29■□□□□ 0.2
NCKIPSD-204ENST00000416649 LGALS16A8MUM7 142 aa16.29■□□□□ 0.2
NCKIPSD-204ENST00000416649 WNT7AO00755 349 aa16.29■□□□□ 0.2
NCKIPSD-204ENST00000416649 BUB1O43683 1085 aa16.29■□□□□ 0.2
NCKIPSD-204ENST00000416649 PRDM1O75626 825 aa16.29■□□□□ 0.2
NCKIPSD-204ENST00000416649 SCTRP47872 440 aa16.29■□□□□ 0.2
NCKIPSD-204ENST00000416649 RASSF8Q8NHQ8 419 aa16.29■□□□□ 0.2
NCKIPSD-204ENST00000416649 TMEM87BQ96K49 555 aa16.29■□□□□ 0.2
NCKIPSD-204ENST00000416649 ZSWIM5Q9P217 1185 aa16.29■□□□□ 0.2
NCKIPSD-204ENST00000416649 HYOU1Q9Y4L1 999 aa16.29■□□□□ 0.2
NCKIPSD-204ENST00000416649 GMNCA6NCL1 334 aa16.28■□□□□ 0.2
NCKIPSD-204ENST00000416649 IFNAR1P17181 557 aa16.28■□□□□ 0.2
NCKIPSD-204ENST00000416649 TCP11Q8WWU5 503 aa16.28■□□□□ 0.2
NCKIPSD-204ENST00000416649 STAMBPL1Q96FJ0 436 aa16.28■□□□□ 0.2
NCKIPSD-204ENST00000416649 ATP6V0A4Q9HBG4 840 aa16.28■□□□□ 0.2
NCKIPSD-204ENST00000416649 RTN2O75298 545 aa16.28■□□□□ 0.2
NCKIPSD-204ENST00000416649 PAK2Q13177 524 aa16.28■□□□□ 0.2
NCKIPSD-204ENST00000416649 ZKSCAN8Q15776 578 aaPredicted RBP16.28■□□□□ 0.2
NCKIPSD-204ENST00000416649 C6orf89Q6UWU4 347 aa16.28■□□□□ 0.2
NCKIPSD-204ENST00000416649 IRF2BP1Q8IU81 584 aa16.28■□□□□ 0.2
NCKIPSD-204ENST00000416649 CACNA2D3Q8IZS8 1091 aa16.28■□□□□ 0.2
NCKIPSD-204ENST00000416649 ARMC2Q8NEN0 867 aa16.28■□□□□ 0.2
NCKIPSD-204ENST00000416649 NSMCE1Q8WV22 266 aa16.28■□□□□ 0.2
NCKIPSD-204ENST00000416649 ZNF263O14978 683 aa16.27■□□□□ 0.2
NCKIPSD-204ENST00000416649 CLTAP09496 248 aa16.27■□□□□ 0.2
NCKIPSD-204ENST00000416649 PMS1P54277 932 aaKnown RBP16.27■□□□□ 0.2
NCKIPSD-204ENST00000416649 TRIM28Q13263 835 aaKnown RBP16.27■□□□□ 0.2
NCKIPSD-204ENST00000416649 CPLX4Q7Z7G2 160 aa16.27■□□□□ 0.2
NCKIPSD-204ENST00000416649 ALS2CR12Q96Q35 445 aa16.27■□□□□ 0.2
NCKIPSD-204ENST00000416649 KIF3CO14782 793 aa16.27■□□□□ 0.19
NCKIPSD-204ENST00000416649 TCP1P17987 556 aaKnown RBP16.27■□□□□ 0.19
NCKIPSD-204ENST00000416649 ITGB3BPQ13352 177 aaPredicted RBP16.27■□□□□ 0.19
NCKIPSD-204ENST00000416649 DRP2Q13474 957 aa16.27■□□□□ 0.19
NCKIPSD-204ENST00000416649 AMIGO3Q86WK7 504 aa16.27■□□□□ 0.19
NCKIPSD-204ENST00000416649 SEC16BQ96JE7 1060 aa16.27■□□□□ 0.19
NCKIPSD-204ENST00000416649 PAGR1Q9BTK6 254 aa16.27■□□□□ 0.19
NCKIPSD-204ENST00000416649 LEMD3Q9Y2U8 911 aa16.27■□□□□ 0.19
NCKIPSD-204ENST00000416649 WDR19Q8NEZ3 1342 aa16.27■□□□□ 0.19
NCKIPSD-204ENST00000416649 MYH13Q9UKX3 1938 aa16.27■□□□□ 0.19
NCKIPSD-204ENST00000416649 C4AP0C0L4 1744 aa16.26■□□□□ 0.19
NCKIPSD-204ENST00000416649 C4BP0C0L5 1744 aa16.26■□□□□ 0.19
NCKIPSD-204ENST00000416649 NWD2Q9ULI1 1742 aa16.26■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms