RNA–Protein interactions for RNA: ENST00000414963.2

SF3B1-204, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 1 (best) BASIC

Gene SF3B1, Length 651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-204ENST00000414963 PAGR1Q9BTK6 254 aa16.3■□□□□ 0.2
SF3B1-204ENST00000414963 BAG4O95429 457 aaKnown RBP16.29■□□□□ 0.2
SF3B1-204ENST00000414963 ALDH1A1P00352 501 aa16.29■□□□□ 0.2
SF3B1-204ENST00000414963 TOB1P50616 345 aaPredicted RBP16.29■□□□□ 0.2
SF3B1-204ENST00000414963 DNM1Q05193 864 aaKnown RBP16.29■□□□□ 0.2
SF3B1-204ENST00000414963 NONOQ15233 471 aaKnown RBP eCLIP16.29■□□□□ 0.2
SF3B1-204ENST00000414963 Q3C1V9 767 aa16.29■□□□□ 0.2
SF3B1-204ENST00000414963 NOM1Q5C9Z4 860 aaKnown RBP16.29■□□□□ 0.2
SF3B1-204ENST00000414963 JAKMIP3Q5VZ66 844 aa16.29■□□□□ 0.2
SF3B1-204ENST00000414963 FAM173BQ6P4H8 233 aa16.29■□□□□ 0.2
SF3B1-204ENST00000414963 PIK3AP1Q6ZUJ8 805 aa16.29■□□□□ 0.2
SF3B1-204ENST00000414963 MROH8Q9H579 483 aa16.29■□□□□ 0.2
SF3B1-204ENST00000414963 ACAD9Q9H845 621 aa16.29■□□□□ 0.2
SF3B1-204ENST00000414963 TMEM260Q9NX78 707 aa16.29■□□□□ 0.2
SF3B1-204ENST00000414963 CFAP45Q9UL16 551 aa16.29■□□□□ 0.2
SF3B1-204ENST00000414963 FAM205CA6NFA0 338 aa16.28■□□□□ 0.2
SF3B1-204ENST00000414963 CFBP00751 764 aa16.28■□□□□ 0.2
SF3B1-204ENST00000414963 CCNA1P78396 465 aa16.28■□□□□ 0.2
SF3B1-204ENST00000414963 TAF1CQ15572 869 aaPredicted RBP16.28■□□□□ 0.2
SF3B1-204ENST00000414963 FAM110CQ1W6H9 321 aa16.28■□□□□ 0.2
SF3B1-204ENST00000414963 CRYGNQ8WXF5 182 aa16.28■□□□□ 0.2
SF3B1-204ENST00000414963 GBP4Q96PP9 640 aa16.28■□□□□ 0.2
SF3B1-204ENST00000414963 ZFYVE28Q9HCC9 887 aa16.28■□□□□ 0.2
SF3B1-204ENST00000414963 HOMER2Q9NSB8 354 aa16.28■□□□□ 0.2
SF3B1-204ENST00000414963 RTEL1Q9NZ71 1219 aa16.28■□□□□ 0.2
SF3B1-204ENST00000414963 NOL7Q9UMY1 257 aaKnown RBP16.28■□□□□ 0.2
SF3B1-204ENST00000414963 COL11A1P12107 1806 aaPredicted RBP16.27■□□□□ 0.2
SF3B1-204ENST00000414963 SPDYE3A6NKU9 549 aa16.27■□□□□ 0.2
SF3B1-204ENST00000414963 CA12O43570 354 aa16.27■□□□□ 0.2
SF3B1-204ENST00000414963 TLR2O60603 784 aa16.27■□□□□ 0.2
SF3B1-204ENST00000414963 PEX10O60683 326 aa16.27■□□□□ 0.2
SF3B1-204ENST00000414963 AOC2O75106 756 aa16.27■□□□□ 0.2
SF3B1-204ENST00000414963 BCRP11274 1271 aa16.27■□□□□ 0.2
SF3B1-204ENST00000414963 ERCC3P19447 782 aa16.27■□□□□ 0.2
SF3B1-204ENST00000414963 HOXA13P31271 388 aaPredicted RBP16.27■□□□□ 0.2
SF3B1-204ENST00000414963 RPS6P62753 249 aaKnown RBP16.27■□□□□ 0.2
SF3B1-204ENST00000414963 KRT85P78386 507 aa16.27■□□□□ 0.2
SF3B1-204ENST00000414963 C17orf99Q6UX52 265 aa16.27■□□□□ 0.2
SF3B1-204ENST00000414963 RNF207Q6ZRF8 634 aa16.27■□□□□ 0.2
SF3B1-204ENST00000414963 SYTL5Q8TDW5 730 aaPredicted RBP16.27■□□□□ 0.2
SF3B1-204ENST00000414963 ANO3Q9BYT9 981 aa16.27■□□□□ 0.2
SF3B1-204ENST00000414963 POLR3EQ9NVU0 708 aa16.27■□□□□ 0.2
SF3B1-204ENST00000414963 MORC2Q9Y6X9 1032 aaPredicted RBP16.27■□□□□ 0.2
SF3B1-204ENST00000414963 SMCHD1A6NHR9 2005 aa16.26■□□□□ 0.19
SF3B1-204ENST00000414963 PFASO15067 1338 aa16.26■□□□□ 0.19
SF3B1-204ENST00000414963 EDIL3O43854 480 aa16.26■□□□□ 0.19
SF3B1-204ENST00000414963 SREBF1P36956 1147 aa16.26■□□□□ 0.19
SF3B1-204ENST00000414963 NASPP49321 788 aaPredicted RBP16.26■□□□□ 0.19
SF3B1-204ENST00000414963 VEGFBP49765 207 aa16.26■□□□□ 0.19
SF3B1-204ENST00000414963 USP11P51784 963 aa16.26■□□□□ 0.19
SF3B1-204ENST00000414963 GRM1Q13255 1194 aa16.26■□□□□ 0.19
SF3B1-204ENST00000414963 ORC2Q13416 577 aaPredicted RBP16.26■□□□□ 0.19
SF3B1-204ENST00000414963 BAATQ14032 418 aaPredicted RBP16.26■□□□□ 0.19
SF3B1-204ENST00000414963 FOXD4L6Q3SYB3 417 aaPredicted RBP16.26■□□□□ 0.19
SF3B1-204ENST00000414963 FOXD4L3Q6VB84 417 aaPredicted RBP16.26■□□□□ 0.19
SF3B1-204ENST00000414963 NCAPG2Q86XI2 1143 aa16.26■□□□□ 0.19
SF3B1-204ENST00000414963 ANKRD13CQ8N6S4 541 aa16.26■□□□□ 0.19
SF3B1-204ENST00000414963 TBCKQ8TEA7 893 aa16.26■□□□□ 0.19
SF3B1-204ENST00000414963 USP28Q96RU2 1077 aa16.26■□□□□ 0.19
SF3B1-204ENST00000414963 CFHR5Q9BXR6 569 aa16.26■□□□□ 0.19
SF3B1-204ENST00000414963 SCAND2PQ9GZW5 306 aaPredicted RBP16.26■□□□□ 0.19
SF3B1-204ENST00000414963 A1CFQ9NQ94 594 aaKnown RBP16.26■□□□□ 0.19
SF3B1-204ENST00000414963 CYP39A1Q9NYL5 469 aa16.26■□□□□ 0.19
SF3B1-204ENST00000414963 COL20A1Q9P218 1284 aa16.26■□□□□ 0.19
SF3B1-204ENST00000414963 TFIP11Q9UBB9 837 aaKnown RBP16.26■□□□□ 0.19
SF3B1-204ENST00000414963 RCOR1Q9UKL0 485 aa16.26■□□□□ 0.19
SF3B1-204ENST00000414963 FRMPD4Q14CM0 1322 aa16.25■□□□□ 0.19
SF3B1-204ENST00000414963 RPTORQ8N122 1335 aa16.25■□□□□ 0.19
SF3B1-204ENST00000414963 YEATS4O95619 227 aa16.25■□□□□ 0.19
SF3B1-204ENST00000414963 CYP3A4P08684 503 aa16.25■□□□□ 0.19
SF3B1-204ENST00000414963 INF2Q27J81 1249 aa16.25■□□□□ 0.19
SF3B1-204ENST00000414963 ANO1Q5XXA6 986 aa16.25■□□□□ 0.19
SF3B1-204ENST00000414963 NEK8Q86SG6 692 aa16.25■□□□□ 0.19
SF3B1-204ENST00000414963 ABRAQ8N0Z2 381 aa16.25■□□□□ 0.19
SF3B1-204ENST00000414963 CHAMP1Q96JM3 812 aa16.25■□□□□ 0.19
SF3B1-204ENST00000414963 NAP1L4Q99733 375 aaKnown RBP16.25■□□□□ 0.19
SF3B1-204ENST00000414963 EHMT1Q9H9B1 1298 aa16.25■□□□□ 0.19
SF3B1-204ENST00000414963 EIF4ENIF1Q9NRA8 985 aaKnown RBP16.25■□□□□ 0.19
SF3B1-204ENST00000414963 CYP3A7-CYP3A51PA0A087WV96 503 aa16.24■□□□□ 0.19
SF3B1-204ENST00000414963 STRNO43815 780 aa16.24■□□□□ 0.19
SF3B1-204ENST00000414963 BMP15O95972 392 aa16.24■□□□□ 0.19
SF3B1-204ENST00000414963 CYP3A7P24462 503 aa16.24■□□□□ 0.19
SF3B1-204ENST00000414963 CRHR2Q13324 411 aa16.24■□□□□ 0.19
SF3B1-204ENST00000414963 SLC39A14Q15043 492 aa16.24■□□□□ 0.19
SF3B1-204ENST00000414963 TTC38Q5R3I4 469 aa16.24■□□□□ 0.19
SF3B1-204ENST00000414963 PPP4R3AQ6IN85 833 aa16.24■□□□□ 0.19
SF3B1-204ENST00000414963 MOXD1Q6UVY6 613 aa16.24■□□□□ 0.19
SF3B1-204ENST00000414963 NSMFQ6X4W1 530 aa16.24■□□□□ 0.19
SF3B1-204ENST00000414963 SLC30A10Q6XR72 485 aa16.24■□□□□ 0.19
SF3B1-204ENST00000414963 FCHSD1Q86WN1 690 aa16.24■□□□□ 0.19
SF3B1-204ENST00000414963 TMEM87AQ8NBN3 555 aa16.24■□□□□ 0.19
SF3B1-204ENST00000414963 PORCNQ9H237 461 aa16.24■□□□□ 0.19
SF3B1-204ENST00000414963 R3HDMLQ9H3Y0 253 aa16.24■□□□□ 0.19
SF3B1-204ENST00000414963 CNPY2Q9Y2B0 182 aa16.24■□□□□ 0.19
SF3B1-204ENST00000414963 PCDHB6Q9Y5E3 794 aa16.24■□□□□ 0.19
SF3B1-204ENST00000414963 CLIC4Q9Y696 253 aa16.24■□□□□ 0.19
SF3B1-204ENST00000414963 DNAJC25-GNG10A0A024R161 153 aa16.23■□□□□ 0.19
SF3B1-204ENST00000414963 WNT7AO00755 349 aa16.23■□□□□ 0.19
SF3B1-204ENST00000414963 FCER1AP12319 257 aa16.23■□□□□ 0.19
SF3B1-204ENST00000414963 GCFC2P16383 781 aaKnown RBP16.23■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms