RNA–Protein interactions for RNA: ENST00000409747.5

CBX3-203, Transcript of chromobox 3, humanhuman

TSL 1 (best) BASIC

Gene CBX3, Length 1,717 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX3-203ENST00000409747 ASPRV1Q53RT3 343 aa17.27■□□□□ 0.35
CBX3-203ENST00000409747 SLC30A10Q6XR72 485 aa17.27■□□□□ 0.35
CBX3-203ENST00000409747 KIAA1211Q6ZU35 1233 aa17.27■□□□□ 0.35
CBX3-203ENST00000409747 CLEC4DQ8WXI8 215 aa17.27■□□□□ 0.35
CBX3-203ENST00000409747 ANKS1AQ92625 1134 aa17.27■□□□□ 0.35
CBX3-203ENST00000409747 B4E1Z4 1266 aa17.26■□□□□ 0.35
CBX3-203ENST00000409747 DYNC1LI2O43237 492 aaPredicted RBP17.26■□□□□ 0.35
CBX3-203ENST00000409747 DUSP28Q4G0W2 176 aa17.26■□□□□ 0.35
CBX3-203ENST00000409747 MFSD5Q6N075 450 aa17.26■□□□□ 0.35
CBX3-203ENST00000409747 CXCL17Q6UXB2 119 aa17.26■□□□□ 0.35
CBX3-203ENST00000409747 FAM126BQ8IXS8 530 aa17.26■□□□□ 0.35
CBX3-203ENST00000409747 DNERQ8NFT8 737 aa17.26■□□□□ 0.35
CBX3-203ENST00000409747 PURBQ96QR8 312 aaKnown RBP17.26■□□□□ 0.35
CBX3-203ENST00000409747 UBAC1Q9BSL1 405 aa17.26■□□□□ 0.35
CBX3-203ENST00000409747 PDGFCQ9NRA1 345 aa17.26■□□□□ 0.35
CBX3-203ENST00000409747 GOLGA8HP0CJ92 632 aa17.25■□□□□ 0.35
CBX3-203ENST00000409747 RPS6P62753 249 aaKnown RBP17.25■□□□□ 0.35
CBX3-203ENST00000409747 PDE4DQ08499 809 aa17.25■□□□□ 0.35
CBX3-203ENST00000409747 PPIGQ13427 754 aaKnown RBP eCLIP17.25■□□□□ 0.356e-10■□□□□ 9.5
CBX3-203ENST00000409747 TTC22Q5TAA0 569 aa17.25■□□□□ 0.35
CBX3-203ENST00000409747 TMEM199Q8N511 208 aa17.25■□□□□ 0.35
CBX3-203ENST00000409747 RGS22Q8NE09 1264 aa17.25■□□□□ 0.35
CBX3-203ENST00000409747 DDX49Q9Y6V7 483 aaKnown RBP17.25■□□□□ 0.35
CBX3-203ENST00000409747 TNKSO95271 1327 aa17.25■□□□□ 0.35
CBX3-203ENST00000409747 CPT1AP50416 773 aa17.24■□□□□ 0.35
CBX3-203ENST00000409747 EPHB4P54760 987 aa17.24■□□□□ 0.35
CBX3-203ENST00000409747 ENAHQ8N8S7 591 aaPredicted RBP17.24■□□□□ 0.35
CBX3-203ENST00000409747 SLC43A3Q8NBI5 491 aa17.24■□□□□ 0.35
CBX3-203ENST00000409747 RUFY2Q8WXA3 655 aa17.24■□□□□ 0.35
CBX3-203ENST00000409747 WDR11Q9BZH6 1224 aa17.24■□□□□ 0.35
CBX3-203ENST00000409747 ZSWIM5Q9P217 1185 aa17.24■□□□□ 0.35
CBX3-203ENST00000409747 ABCB11O95342 1321 aa17.24■□□□□ 0.35
CBX3-203ENST00000409747 ITGA7Q13683 1181 aa17.24■□□□□ 0.35
CBX3-203ENST00000409747 CDC37Q16543 378 aaPredicted RBP17.24■□□□□ 0.35
CBX3-203ENST00000409747 USH1GQ495M9 461 aa17.24■□□□□ 0.35
CBX3-203ENST00000409747 BRDTQ58F21 947 aaPredicted RBP17.24■□□□□ 0.35
CBX3-203ENST00000409747 POLR3EQ9NVU0 708 aa17.24■□□□□ 0.35
CBX3-203ENST00000409747 TMEM265A0A087WTH1 108 aa17.23■□□□□ 0.35
CBX3-203ENST00000409747 RBM47A0AV96 593 aaKnown RBP17.23■□□□□ 0.35
CBX3-203ENST00000409747 NKRFO15226 690 aaKnown RBP eCLIP17.23■□□□□ 0.352e-11■□□□□ 8.6
CBX3-203ENST00000409747 CD4P01730 458 aa17.23■□□□□ 0.35
CBX3-203ENST00000409747 PARP1P09874 1014 aaKnown RBP17.23■□□□□ 0.35
CBX3-203ENST00000409747 GSPT1P15170 499 aaKnown RBP17.23■□□□□ 0.35
CBX3-203ENST00000409747 FAM161BQ96MY7 647 aa17.23■□□□□ 0.35
CBX3-203ENST00000409747 GUCD1Q96NT3 240 aa17.23■□□□□ 0.35
CBX3-203ENST00000409747 UBA5Q9GZZ9 404 aa17.23■□□□□ 0.35
CBX3-203ENST00000409747 DHX16O60231 1041 aaKnown RBP17.22■□□□□ 0.35
CBX3-203ENST00000409747 EDNRBP24530 442 aa17.22■□□□□ 0.35
CBX3-203ENST00000409747 PDE4AP27815 886 aa17.22■□□□□ 0.35
CBX3-203ENST00000409747 TRDNQ13061 729 aa17.22■□□□□ 0.35
CBX3-203ENST00000409747 PPP2R5BQ15173 497 aa17.22■□□□□ 0.35
CBX3-203ENST00000409747 IFIT1BQ5T764 474 aaKnown RBP17.22■□□□□ 0.35
CBX3-203ENST00000409747 ADGRF4Q8IZF3 695 aa17.22■□□□□ 0.35
CBX3-203ENST00000409747 SCFD2Q8WU76 684 aa17.22■□□□□ 0.35
CBX3-203ENST00000409747 PSRC1Q6PGN9 363 aaPredicted RBP17.21■□□□□ 0.35
CBX3-203ENST00000409747 MCF2L2Q86YR7 1114 aa17.21■□□□□ 0.35
CBX3-203ENST00000409747 PPP1R12CQ9BZL4 782 aa17.21■□□□□ 0.35
CBX3-203ENST00000409747 HSFX4A0A1B0GTS1 333 aaPredicted RBP17.21■□□□□ 0.35
CBX3-203ENST00000409747 HSFX3A0A1B0GWH4 333 aaPredicted RBP17.21■□□□□ 0.35
CBX3-203ENST00000409747 OR6J1Q8NGC5 347 aa17.21■□□□□ 0.35
CBX3-203ENST00000409747 CPVLQ9H3G5 476 aa17.21■□□□□ 0.35
CBX3-203ENST00000409747 HIPK3Q9H422 1215 aa17.21■□□□□ 0.35
CBX3-203ENST00000409747 GPHNQ9NQX3 736 aaPredicted RBP17.21■□□□□ 0.35
CBX3-203ENST00000409747 U3KPZ7 1027 aaPredicted RBP17.21■□□□□ 0.35
CBX3-203ENST00000409747 PTGS1P23219 599 aa17.2■□□□□ 0.34
CBX3-203ENST00000409747 TMEM63BQ5T3F8 832 aa17.2■□□□□ 0.34
CBX3-203ENST00000409747 FBXO11Q86XK2 927 aa17.2■□□□□ 0.34
CBX3-203ENST00000409747 BUD13Q9BRD0 619 aaKnown RBP eCLIP17.2■□□□□ 0.34
CBX3-203ENST00000409747 IL25Q9H293 177 aa17.2■□□□□ 0.34
CBX3-203ENST00000409747 SEMA6BQ9H3T3 888 aa17.2■□□□□ 0.34
CBX3-203ENST00000409747 MRPL11Q9Y3B7 192 aaKnown RBP17.2■□□□□ 0.34
CBX3-203ENST00000409747 MYH6P13533 1939 aa17.2■□□□□ 0.34
CBX3-203ENST00000409747 KPNA6O60684 536 aa17.19■□□□□ 0.34
CBX3-203ENST00000409747 CSF2RAP15509 400 aa17.19■□□□□ 0.34
CBX3-203ENST00000409747 PURAQ00577 322 aaKnown RBP17.19■□□□□ 0.34
CBX3-203ENST00000409747 TTLL4Q14679 1199 aa17.19■□□□□ 0.34
CBX3-203ENST00000409747 QRICH1Q2TAL8 776 aa17.19■□□□□ 0.34
CBX3-203ENST00000409747 MTIF3Q9H2K0 278 aaKnown RBP17.19■□□□□ 0.34
CBX3-203ENST00000409747 GRIN2DO15399 1336 aa17.19■□□□□ 0.34
CBX3-203ENST00000409747 SUPT20HL2P0C7V6 817 aa17.18■□□□□ 0.34
CBX3-203ENST00000409747 PSMC6P62333 389 aa17.18■□□□□ 0.34
CBX3-203ENST00000409747 TMEM240Q5SV17 173 aa17.18■□□□□ 0.34
CBX3-203ENST00000409747 NSUN6Q8TEA1 469 aaKnown RBP17.18■□□□□ 0.34
CBX3-203ENST00000409747 IWS1Q96ST2 819 aa17.18■□□□□ 0.34
CBX3-203ENST00000409747 CDX2Q99626 313 aaPredicted RBP17.18■□□□□ 0.34
CBX3-203ENST00000409747 MTG1Q9BT17 334 aaPredicted RBP17.18■□□□□ 0.34
CBX3-203ENST00000409747 JMJD4Q9H9V9 463 aa17.18■□□□□ 0.34
CBX3-203ENST00000409747 IL23AQ9NPF7 189 aa17.18■□□□□ 0.34
CBX3-203ENST00000409747 A0A0C4DFX4 3053 aa17.18■□□□□ 0.34
CBX3-203ENST00000409747 ERICH2A1L162 156 aa17.18■□□□□ 0.34
CBX3-203ENST00000409747 B4GALT4O60513 344 aa17.18■□□□□ 0.34
CBX3-203ENST00000409747 MYL3P08590 195 aa17.18■□□□□ 0.34
CBX3-203ENST00000409747 TXNP10599 105 aaKnown RBP17.18■□□□□ 0.34
CBX3-203ENST00000409747 CHMLP26374 656 aa17.18■□□□□ 0.34
CBX3-203ENST00000409747 CYP2C18P33260 490 aa17.18■□□□□ 0.34
CBX3-203ENST00000409747 SEC23AQ15436 765 aa17.18■□□□□ 0.34
CBX3-203ENST00000409747 RALYLQ86SE5 291 aaKnown RBP17.18■□□□□ 0.34
CBX3-203ENST00000409747 AMNQ9BXJ7 453 aa17.18■□□□□ 0.34
CBX3-203ENST00000409747 ALDH8A1Q9H2A2 487 aaPredicted RBP17.18■□□□□ 0.34
CBX3-203ENST00000409747 DNAJB2P25686 324 aa17.17■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 56 ms