RNA–Protein interactions for RNA: ENST00000397545.8

CCDC40-204, Transcript of coiled-coil domain containing 40, humanhuman

APPRIS P3 TSL 5 BASIC

Gene CCDC40, Length 4,294 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-204ENST00000397545 PIH1D3Q9NQM4 214 aaKnown RBP11.86□□□□□ -0.51
CCDC40-204ENST00000397545 ARMCX3Q9UH62 379 aaPredicted RBP11.86□□□□□ -0.51
CCDC40-204ENST00000397545 RNF40O75150 1001 aa11.86□□□□□ -0.51
CCDC40-204ENST00000397545 FMNL1O95466 1100 aaPredicted RBP11.86□□□□□ -0.51
CCDC40-204ENST00000397545 MFSD14BQ5SR56 506 aa11.86□□□□□ -0.51
CCDC40-204ENST00000397545 GOLGA5Q8TBA6 731 aa11.86□□□□□ -0.51
CCDC40-204ENST00000397545 FAM71BQ8TC56 605 aa11.86□□□□□ -0.51
CCDC40-204ENST00000397545 SMC6Q96SB8 1091 aa11.86□□□□□ -0.51
CCDC40-204ENST00000397545 ABCB6Q9NP58 842 aa11.86□□□□□ -0.51
CCDC40-204ENST00000397545 PHLPP2Q6ZVD8 1323 aa11.86□□□□□ -0.51
CCDC40-204ENST00000397545 CALUO43852 315 aaPredicted RBP11.86□□□□□ -0.51
CCDC40-204ENST00000397545 CYP19A1P11511 503 aaPredicted RBP11.86□□□□□ -0.51
CCDC40-204ENST00000397545 XRCC5P13010 732 aaKnown RBP11.86□□□□□ -0.51
CCDC40-204ENST00000397545 STAT1P42224 750 aa11.86□□□□□ -0.51
CCDC40-204ENST00000397545 ARHGAP25P42331 645 aa11.86□□□□□ -0.51
CCDC40-204ENST00000397545 MCAMP43121 646 aa11.86□□□□□ -0.51
CCDC40-204ENST00000397545 SMCR8Q8TEV9 937 aaPredicted RBP11.86□□□□□ -0.51
CCDC40-204ENST00000397545 GJA10Q969M2 543 aa11.86□□□□□ -0.51
CCDC40-204ENST00000397545 KRT12Q99456 494 aa11.86□□□□□ -0.51
CCDC40-204ENST00000397545 RRP15Q9Y3B9 282 aaKnown RBP11.86□□□□□ -0.51
CCDC40-204ENST00000397545 N4BP2Q86UW6 1770 aaPredicted RBP11.85□□□□□ -0.51
CCDC40-204ENST00000397545 TSGA10IPQ3SY00 556 aa11.85□□□□□ -0.51
CCDC40-204ENST00000397545 PRR16Q569H4 304 aa11.85□□□□□ -0.51
CCDC40-204ENST00000397545 FAM26FQ5R3K3 315 aa11.85□□□□□ -0.51
CCDC40-204ENST00000397545 CERS3Q8IU89 383 aa11.85□□□□□ -0.51
CCDC40-204ENST00000397545 UBL4BQ8N7F7 174 aa11.85□□□□□ -0.51
CCDC40-204ENST00000397545 RSRC1Q96IZ7 334 aaKnown RBP11.85□□□□□ -0.51
CCDC40-204ENST00000397545 RNF26Q9BY78 433 aaPredicted RBP11.85□□□□□ -0.51
CCDC40-204ENST00000397545 KCNF1Q9H3M0 494 aa11.85□□□□□ -0.51
CCDC40-204ENST00000397545 STK32BQ9NY57 414 aa11.85□□□□□ -0.51
CCDC40-204ENST00000397545 TUBGCP6Q96RT7 1819 aa11.85□□□□□ -0.51
CCDC40-204ENST00000397545 STAMBPO95630 424 aa11.85□□□□□ -0.51
CCDC40-204ENST00000397545 CLNS1AP54105 237 aaKnown RBP11.85□□□□□ -0.51
CCDC40-204ENST00000397545 SLC7A5Q01650 507 aa11.85□□□□□ -0.51
CCDC40-204ENST00000397545 TOGARAM2Q6ZUX3 1019 aa11.85□□□□□ -0.51
CCDC40-204ENST00000397545 DDX12PQ92771 950 aa11.85□□□□□ -0.51
CCDC40-204ENST00000397545 MED4Q9NPJ6 270 aa11.85□□□□□ -0.51
CCDC40-204ENST00000397545 MYCLP12524 364 aaPredicted RBP11.85□□□□□ -0.51
CCDC40-204ENST00000397545 C2orf54Q08AI8 447 aa11.85□□□□□ -0.51
CCDC40-204ENST00000397545 FMR1NBQ8N0W7 255 aaPredicted RBP11.85□□□□□ -0.51
CCDC40-204ENST00000397545 ARPP21Q9UBL0 812 aaPredicted RBP11.85□□□□□ -0.51
CCDC40-204ENST00000397545 GDAQ9Y2T3 454 aa11.85□□□□□ -0.51
CCDC40-204ENST00000397545 AFDNP55196 1824 aaKnown RBP11.85□□□□□ -0.51
CCDC40-204ENST00000397545 FOXN1O15353 648 aa11.84□□□□□ -0.51
CCDC40-204ENST00000397545 BAG6P46379 1132 aa11.84□□□□□ -0.51
CCDC40-204ENST00000397545 ADAM9Q13443 819 aa11.84□□□□□ -0.51
CCDC40-204ENST00000397545 CAPN12Q6ZSI9 719 aa11.84□□□□□ -0.51
CCDC40-204ENST00000397545 PLA2G4DQ86XP0 818 aa11.84□□□□□ -0.51
CCDC40-204ENST00000397545 AMFRQ9UKV5 643 aa11.84□□□□□ -0.51
CCDC40-204ENST00000397545 STK38LQ9Y2H1 464 aa11.84□□□□□ -0.51
CCDC40-204ENST00000397545 RGS16O15492 202 aaPredicted RBP11.84□□□□□ -0.51
CCDC40-204ENST00000397545 PCK1P35558 622 aa11.84□□□□□ -0.51
CCDC40-204ENST00000397545 IFNAR2P48551 515 aa11.84□□□□□ -0.51
CCDC40-204ENST00000397545 CASP8Q14790 479 aa11.84□□□□□ -0.51
CCDC40-204ENST00000397545 SARM1Q6SZW1 724 aa11.84□□□□□ -0.51
CCDC40-204ENST00000397545 KRT27Q7Z3Y8 459 aa11.84□□□□□ -0.51
CCDC40-204ENST00000397545 APBB1IPQ7Z5R6 666 aaPredicted RBP11.84□□□□□ -0.51
CCDC40-204ENST00000397545 EPB41L5Q9HCM4 733 aa11.84□□□□□ -0.51
CCDC40-204ENST00000397545 STIM2Q9P246 746 aa11.84□□□□□ -0.51
CCDC40-204ENST00000397545 TSKSQ9UJT2 592 aa11.84□□□□□ -0.51
CCDC40-204ENST00000397545 KCNQ2O43526 872 aa11.84□□□□□ -0.51
CCDC40-204ENST00000397545 IFNB1P01574 187 aa11.84□□□□□ -0.51
CCDC40-204ENST00000397545 ALDH3A1P30838 453 aa11.84□□□□□ -0.51
CCDC40-204ENST00000397545 IRX2Q9BZI1 471 aaPredicted RBP11.84□□□□□ -0.51
CCDC40-204ENST00000397545 ST7Q9NRC1 585 aa11.84□□□□□ -0.51
CCDC40-204ENST00000397545 SBDSQ9Y3A5 250 aaKnown RBP eCLIP11.84□□□□□ -0.51
CCDC40-204ENST00000397545 COMMD10Q9Y6G5 202 aa11.84□□□□□ -0.51
CCDC40-204ENST00000397545 A0A1B0GUA9 196 aa11.83□□□□□ -0.51
CCDC40-204ENST00000397545 FTCDO95954 541 aa11.83□□□□□ -0.51
CCDC40-204ENST00000397545 H2AFZP0C0S5 128 aa11.83□□□□□ -0.51
CCDC40-204ENST00000397545 KRT15P19012 456 aa11.83□□□□□ -0.51
CCDC40-204ENST00000397545 DENND2CQ68D51 928 aa11.83□□□□□ -0.51
CCDC40-204ENST00000397545 H2AFVQ71UI9 128 aa11.83□□□□□ -0.51
CCDC40-204ENST00000397545 TRAF3IP1Q8TDR0 691 aaPredicted RBP11.83□□□□□ -0.51
CCDC40-204ENST00000397545 PANK4Q9NVE7 773 aa11.83□□□□□ -0.51
CCDC40-204ENST00000397545 PARP3Q9Y6F1 533 aa11.83□□□□□ -0.51
CCDC40-204ENST00000397545 SIPA1L3O60292 1781 aaPredicted RBP11.83□□□□□ -0.51
CCDC40-204ENST00000397545 COL18A1P39060 1754 aa11.83□□□□□ -0.51
CCDC40-204ENST00000397545 SRGAP2O75044 1071 aa11.83□□□□□ -0.52
CCDC40-204ENST00000397545 LONP1P36776 959 aaKnown RBP11.83□□□□□ -0.52
CCDC40-204ENST00000397545 IFT88Q13099 833 aa11.83□□□□□ -0.52
CCDC40-204ENST00000397545 NSMFQ6X4W1 530 aa11.83□□□□□ -0.52
CCDC40-204ENST00000397545 LZTS2Q9BRK4 669 aa11.83□□□□□ -0.52
CCDC40-204ENST00000397545 PSTPIP2Q9H939 334 aa11.83□□□□□ -0.52
CCDC40-204ENST00000397545 HDAC9Q9UKV0 1011 aa11.83□□□□□ -0.52
CCDC40-204ENST00000397545 EPB41L3Q9Y2J2 1087 aaPredicted RBP11.83□□□□□ -0.52
CCDC40-204ENST00000397545 CEP83Q9Y592 693 aa11.83□□□□□ -0.52
CCDC40-204ENST00000397545 PALLDQ8WX93 1383 aa11.83□□□□□ -0.52
CCDC40-204ENST00000397545 MRC1P22897 1456 aa11.83□□□□□ -0.52
CCDC40-204ENST00000397545 A6NNZ2 444 aa11.83□□□□□ -0.52
CCDC40-204ENST00000397545 NDUFA10O95299 355 aa11.83□□□□□ -0.52
CCDC40-204ENST00000397545 PLEKHA8P1O95397 391 aa11.83□□□□□ -0.52
CCDC40-204ENST00000397545 SCNN1DP51172 638 aa11.83□□□□□ -0.52
CCDC40-204ENST00000397545 RASGRF1Q13972 1273 aa11.83□□□□□ -0.52
CCDC40-204ENST00000397545 TUBB8Q3ZCM7 444 aa11.83□□□□□ -0.52
CCDC40-204ENST00000397545 TBC1D10BQ4KMP7 808 aaPredicted RBP11.83□□□□□ -0.52
CCDC40-204ENST00000397545 WDR44Q5JSH3 913 aa11.83□□□□□ -0.52
CCDC40-204ENST00000397545 PAGE5Q96GU1 130 aa11.83□□□□□ -0.52
CCDC40-204ENST00000397545 SWAP70Q9UH65 585 aa11.83□□□□□ -0.52
CCDC40-204ENST00000397545 ADAM21Q9UKJ8 722 aa11.83□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms