RNA–Protein interactions for RNA: ENST00000392004.7

COL6A3-205, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 4,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-205ENST00000392004 ANO3Q9BYT9 981 aa11.55□□□□□ -0.56
COL6A3-205ENST00000392004 EFCC1Q9HA90 598 aa11.55□□□□□ -0.56
COL6A3-205ENST00000392004 ADD3Q9UEY8 706 aaKnown RBP11.55□□□□□ -0.56
COL6A3-205ENST00000392004 FEM1BQ9UK73 627 aa11.55□□□□□ -0.56
COL6A3-205ENST00000392004 KARSQ15046 597 aaKnown RBP11.54□□□□□ -0.56
COL6A3-205ENST00000392004 FAM83AQ86UY5 434 aa11.54□□□□□ -0.56
COL6A3-205ENST00000392004 IL17RBQ9NRM6 502 aa11.54□□□□□ -0.56
COL6A3-205ENST00000392004 CGNQ9P2M7 1197 aaKnown RBP11.54□□□□□ -0.56
COL6A3-205ENST00000392004 TBC1D8O95759 1140 aa11.54□□□□□ -0.56
COL6A3-205ENST00000392004 C16orf45Q96MC5 204 aaPredicted RBP11.54□□□□□ -0.56
COL6A3-205ENST00000392004 ZFYVE28Q9HCC9 887 aa11.54□□□□□ -0.56
COL6A3-205ENST00000392004 TNNT1P13805 278 aa11.54□□□□□ -0.56
COL6A3-205ENST00000392004 PTGS1P23219 599 aa11.54□□□□□ -0.56
COL6A3-205ENST00000392004 HERC4Q5GLZ8 1057 aaPredicted RBP11.54□□□□□ -0.56
COL6A3-205ENST00000392004 AP5M1Q9H0R1 490 aa11.54□□□□□ -0.56
COL6A3-205ENST00000392004 PCDHA6Q9UN73 950 aa11.54□□□□□ -0.56
COL6A3-205ENST00000392004 PCDHA8Q9Y5H6 950 aa11.54□□□□□ -0.56
COL6A3-205ENST00000392004 UTRNP46939 3433 aa11.53□□□□□ -0.56
COL6A3-205ENST00000392004 AMPD3Q01432 767 aa11.53□□□□□ -0.56
COL6A3-205ENST00000392004 CCDC40Q4G0X9 1142 aa11.53□□□□□ -0.56
COL6A3-205ENST00000392004 EP400NLQ6ZTU2 488 aa11.53□□□□□ -0.56
COL6A3-205ENST00000392004 FAM200AQ8TCP9 573 aa11.53□□□□□ -0.56
COL6A3-205ENST00000392004 DCAF4Q8WV16 495 aa11.53□□□□□ -0.56
COL6A3-205ENST00000392004 LEO1Q8WVC0 666 aaPredicted RBP11.53□□□□□ -0.56
COL6A3-205ENST00000392004 KCNH3Q9ULD8 1083 aa11.53□□□□□ -0.56
COL6A3-205ENST00000392004 PCDHA4Q9UN74 947 aa11.53□□□□□ -0.56
COL6A3-205ENST00000392004 FZD9O00144 591 aa11.53□□□□□ -0.56
COL6A3-205ENST00000392004 PTPRAP18433 802 aa11.53□□□□□ -0.56
COL6A3-205ENST00000392004 TRIM47Q96LD4 638 aa11.53□□□□□ -0.56
COL6A3-205ENST00000392004 PURBQ96QR8 312 aaKnown RBP11.53□□□□□ -0.56
COL6A3-205ENST00000392004 EPB41L2O43491 1005 aaKnown RBP11.53□□□□□ -0.56
COL6A3-205ENST00000392004 USO1O60763 962 aaKnown RBP11.53□□□□□ -0.56
COL6A3-205ENST00000392004 TDP2O95551 362 aa11.53□□□□□ -0.56
COL6A3-205ENST00000392004 LONRF3Q496Y0 759 aa11.53□□□□□ -0.56
COL6A3-205ENST00000392004 PIGOQ8TEQ8 1089 aa11.53□□□□□ -0.56
COL6A3-205ENST00000392004 CEP89Q96ST8 783 aa11.53□□□□□ -0.56
COL6A3-205ENST00000392004 IDI2Q9BXS1 227 aa11.53□□□□□ -0.56
COL6A3-205ENST00000392004 ACAD9Q9H845 621 aa11.53□□□□□ -0.56
COL6A3-205ENST00000392004 NYAP2Q9P242 653 aa11.53□□□□□ -0.56
COL6A3-205ENST00000392004 KIAA1024Q9UPX6 916 aa11.53□□□□□ -0.56
COL6A3-205ENST00000392004 A0A1W2PRG0 241 aa11.52□□□□□ -0.56
COL6A3-205ENST00000392004 KLRG2A4D1S0 409 aaPredicted RBP11.52□□□□□ -0.56
COL6A3-205ENST00000392004 SMTNL1A8MU46 457 aa11.52□□□□□ -0.56
COL6A3-205ENST00000392004 DYNC1LI2O43237 492 aaPredicted RBP11.52□□□□□ -0.56
COL6A3-205ENST00000392004 C6orf222P0C671 652 aaPredicted RBP11.52□□□□□ -0.56
COL6A3-205ENST00000392004 EXOSC10Q01780 885 aaKnown RBP11.52□□□□□ -0.56
COL6A3-205ENST00000392004 FAM102BQ5T8I3 360 aa11.52□□□□□ -0.56
COL6A3-205ENST00000392004 CCDC186Q7Z3E2 898 aa11.52□□□□□ -0.56
COL6A3-205ENST00000392004 CABP7Q86V35 215 aa11.52□□□□□ -0.56
COL6A3-205ENST00000392004 IQUBQ8NA54 791 aa11.52□□□□□ -0.56
COL6A3-205ENST00000392004 POTEMA6NI47 508 aa11.52□□□□□ -0.57
COL6A3-205ENST00000392004 CTTNQ14247 550 aaKnown RBP11.52□□□□□ -0.57
COL6A3-205ENST00000392004 GRM4Q14833 912 aa11.52□□□□□ -0.57
COL6A3-205ENST00000392004 GPRC5AQ8NFJ5 357 aa11.52□□□□□ -0.57
COL6A3-205ENST00000392004 PARK7Q99497 189 aaKnown RBP11.52□□□□□ -0.57
COL6A3-205ENST00000392004 APOL6Q9BWW8 343 aa11.52□□□□□ -0.57
COL6A3-205ENST00000392004 JMJD4Q9H9V9 463 aa11.52□□□□□ -0.57
COL6A3-205ENST00000392004 SEPT9Q9UHD8 586 aaPredicted RBP11.52□□□□□ -0.57
COL6A3-205ENST00000392004 RPAP1Q9BWH6 1393 aaPredicted RBP11.52□□□□□ -0.57
COL6A3-205ENST00000392004 SFI1A8K8P3 1242 aa11.52□□□□□ -0.57
COL6A3-205ENST00000392004 C19orf81C9J6K1 198 aa11.52□□□□□ -0.57
COL6A3-205ENST00000392004 PRPF3O43395 683 aaKnown RBP11.52□□□□□ -0.57
COL6A3-205ENST00000392004 MTIF2P46199 727 aaKnown RBP11.52□□□□□ -0.57
COL6A3-205ENST00000392004 MTERF2Q49AM1 385 aa11.52□□□□□ -0.57
COL6A3-205ENST00000392004 CT47A1Q5JQC4 288 aaPredicted RBP11.52□□□□□ -0.57
COL6A3-205ENST00000392004 SH3BP5LQ7L8J4 393 aa11.52□□□□□ -0.57
COL6A3-205ENST00000392004 GRAMD1CQ8IYS0 662 aa11.52□□□□□ -0.57
COL6A3-205ENST00000392004 CCAR2Q8N163 923 aaKnown RBP11.52□□□□□ -0.57
COL6A3-205ENST00000392004 GNL3Q9BVP2 549 aaKnown RBP eCLIP11.52□□□□□ -0.57
COL6A3-205ENST00000392004 DNAJC25Q9H1X3 360 aa11.52□□□□□ -0.57
COL6A3-205ENST00000392004 PUF60Q9UHX1 559 aaKnown RBP11.52□□□□□ -0.57
COL6A3-205ENST00000392004 DNM3Q9UQ16 869 aa11.52□□□□□ -0.57
COL6A3-205ENST00000392004 PAXBP1Q9Y5B6 917 aa11.52□□□□□ -0.57
COL6A3-205ENST00000392004 PP2D1A8MPX8 630 aa11.51□□□□□ -0.57
COL6A3-205ENST00000392004 NFIBO00712 420 aa11.51□□□□□ -0.57
COL6A3-205ENST00000392004 WDR46O15213 610 aaKnown RBP11.51□□□□□ -0.57
COL6A3-205ENST00000392004 IPO7O95373 1038 aaKnown RBP11.51□□□□□ -0.57
COL6A3-205ENST00000392004 BMP15O95972 392 aa11.51□□□□□ -0.57
COL6A3-205ENST00000392004 MYL3P08590 195 aa11.51□□□□□ -0.57
COL6A3-205ENST00000392004 GTF2A2P52657 109 aa11.51□□□□□ -0.57
COL6A3-205ENST00000392004 RPS6P62753 249 aaKnown RBP11.51□□□□□ -0.57
COL6A3-205ENST00000392004 TROAPQ12815 778 aa11.51□□□□□ -0.57
COL6A3-205ENST00000392004 NFX1Q12986 1120 aaKnown RBP11.51□□□□□ -0.57
COL6A3-205ENST00000392004 FILIP1LQ4L180 1135 aa11.51□□□□□ -0.57
COL6A3-205ENST00000392004 MYCT1Q8N699 235 aa11.51□□□□□ -0.57
COL6A3-205ENST00000392004 FERMT2Q96AC1 680 aa11.51□□□□□ -0.57
COL6A3-205ENST00000392004 FAM163AQ96GL9 167 aaPredicted RBP11.51□□□□□ -0.57
COL6A3-205ENST00000392004 CCDC66A2RUB6 948 aa11.51□□□□□ -0.57
COL6A3-205ENST00000392004 OR52Z1P0C646 297 aa11.51□□□□□ -0.57
COL6A3-205ENST00000392004 CEP135Q66GS9 1140 aa11.51□□□□□ -0.57
COL6A3-205ENST00000392004 PDXDC2PQ6P474 469 aa11.51□□□□□ -0.57
COL6A3-205ENST00000392004 FAM177A1Q8N128 213 aaPredicted RBP11.51□□□□□ -0.57
COL6A3-205ENST00000392004 ANKRD7Q92527 254 aa11.51□□□□□ -0.57
COL6A3-205ENST00000392004 GLT8D2Q9H1C3 349 aa11.51□□□□□ -0.57
COL6A3-205ENST00000392004 TRIM17Q9Y577 477 aa11.51□□□□□ -0.57
COL6A3-205ENST00000392004 MMP1P03956 469 aa11.51□□□□□ -0.57
COL6A3-205ENST00000392004 KIF23Q02241 960 aaPredicted RBP11.51□□□□□ -0.57
COL6A3-205ENST00000392004 ARHGEF6Q15052 776 aa11.51□□□□□ -0.57
COL6A3-205ENST00000392004 SV2BQ7L1I2 683 aa11.51□□□□□ -0.57
COL6A3-205ENST00000392004 GAKO14976 1311 aa11.51□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms