RNA–Protein interactions for RNA: ENST00000378825.4

CCDC3-201, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC3, Length 2,731 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-201ENST00000378825 EHBP1Q8NDI1 1231 aa20.56■□□□□ 0.88
CCDC3-201ENST00000378825 IFIH1Q9BYX4 1025 aaKnown RBP20.56■□□□□ 0.88
CCDC3-201ENST00000378825 COL16A1Q07092 1604 aaPredicted RBP20.56■□□□□ 0.88
CCDC3-201ENST00000378825 MYH14Q7Z406 1995 aaKnown RBP20.56■□□□□ 0.88
CCDC3-201ENST00000378825 ANO9A1A5B4 782 aa20.56■□□□□ 0.88
CCDC3-201ENST00000378825 PLCG1P19174 1290 aa20.56■□□□□ 0.88
CCDC3-201ENST00000378825 TRAPPC10P48553 1259 aa20.56■□□□□ 0.88
CCDC3-201ENST00000378825 PDE4DQ08499 809 aa20.56■□□□□ 0.88
CCDC3-201ENST00000378825 RCSD1Q6JBY9 416 aa20.56■□□□□ 0.88
CCDC3-201ENST00000378825 KBTBD4Q9NVX7 518 aa20.56■□□□□ 0.88
CCDC3-201ENST00000378825 IRX3P78415 501 aaPredicted RBP20.55■□□□□ 0.88
CCDC3-201ENST00000378825 PPFIA1Q13136 1202 aa20.55■□□□□ 0.88
CCDC3-201ENST00000378825 ARL6IP4Q66PJ3 421 aaKnown RBP20.55■□□□□ 0.88
CCDC3-201ENST00000378825 HAUS3Q68CZ6 603 aa20.55■□□□□ 0.88
CCDC3-201ENST00000378825 OSBPL9Q96SU4 736 aa20.55■□□□□ 0.88
CCDC3-201ENST00000378825 PCDHA13Q9Y5I0 950 aa20.55■□□□□ 0.88
CCDC3-201ENST00000378825 EBAG9O00559 213 aa20.55■□□□□ 0.88
CCDC3-201ENST00000378825 EIF3HO15372 352 aaKnown RBP eCLIP20.55■□□□□ 0.88
CCDC3-201ENST00000378825 BUB1O43683 1085 aa20.55■□□□□ 0.88
CCDC3-201ENST00000378825 ERLIN2O94905 339 aa20.55■□□□□ 0.88
CCDC3-201ENST00000378825 KLRK1P26718 216 aa20.55■□□□□ 0.88
CCDC3-201ENST00000378825 EIF4A3P38919 411 aaKnown RBP20.55■□□□□ 0.88
CCDC3-201ENST00000378825 CCDC155Q8N6L0 562 aa20.55■□□□□ 0.88
CCDC3-201ENST00000378825 P2RX5Q93086 422 aa20.55■□□□□ 0.88
CCDC3-201ENST00000378825 SH2D4AQ9H788 454 aa20.55■□□□□ 0.88
CCDC3-201ENST00000378825 RBM12Q9NTZ6 932 aaKnown RBP20.55■□□□□ 0.88
CCDC3-201ENST00000378825 TAF1P21675 1872 aa20.55■□□□□ 0.88
CCDC3-201ENST00000378825 FAM153BP0C7A2 387 aa20.55■□□□□ 0.88
CCDC3-201ENST00000378825 CALM1P0DP23 149 aa20.55■□□□□ 0.88
CCDC3-201ENST00000378825 CALM2P0DP24 149 aa20.55■□□□□ 0.88
CCDC3-201ENST00000378825 CALM3P0DP25 149 aa20.55■□□□□ 0.88
CCDC3-201ENST00000378825 GUCY2CP25092 1073 aa20.55■□□□□ 0.88
CCDC3-201ENST00000378825 FAM153CQ494X1 144 aa20.55■□□□□ 0.88
CCDC3-201ENST00000378825 ZNF662Q6ZS27 426 aa20.55■□□□□ 0.88
CCDC3-201ENST00000378825 FAM153AQ9UHL3 310 aa20.55■□□□□ 0.88
CCDC3-201ENST00000378825 DDX52Q9Y2R4 599 aaKnown RBP eCLIP20.55■□□□□ 0.88
CCDC3-201ENST00000378825 CPP00450 1065 aa20.54■□□□□ 0.88
CCDC3-201ENST00000378825 KCNB1Q14721 858 aa20.54■□□□□ 0.88
CCDC3-201ENST00000378825 SPA17Q15506 151 aa20.54■□□□□ 0.88
CCDC3-201ENST00000378825 TRADDQ15628 312 aa20.54■□□□□ 0.88
CCDC3-201ENST00000378825 PTF1AQ7RTS3 328 aa20.54■□□□□ 0.88
CCDC3-201ENST00000378825 CCDC170Q8IYT3 715 aa20.54■□□□□ 0.88
CCDC3-201ENST00000378825 MMGT1Q8N4V1 131 aa20.54■□□□□ 0.88
CCDC3-201ENST00000378825 CACNA1SQ13698 1873 aa20.54■□□□□ 0.88
CCDC3-201ENST00000378825 KIF11P52732 1056 aa20.54■□□□□ 0.88
CCDC3-201ENST00000378825 APBA1Q02410 837 aa20.54■□□□□ 0.88
CCDC3-201ENST00000378825 TXNRD1Q16881 649 aa20.54■□□□□ 0.88
CCDC3-201ENST00000378825 KCNV1Q6PIU1 500 aa20.54■□□□□ 0.88
CCDC3-201ENST00000378825 SH3GL2Q99962 352 aa20.54■□□□□ 0.88
CCDC3-201ENST00000378825 SLC39A2Q9NP94 309 aa20.54■□□□□ 0.88
CCDC3-201ENST00000378825 ROBO1Q9Y6N7 1651 aa20.53■□□□□ 0.88
CCDC3-201ENST00000378825 ASIC1P78348 528 aa20.53■□□□□ 0.88
CCDC3-201ENST00000378825 ZIM3Q96PE6 472 aa20.53■□□□□ 0.88
CCDC3-201ENST00000378825 SEMA6BQ9H3T3 888 aa20.53■□□□□ 0.88
CCDC3-201ENST00000378825 PCDHA6Q9UN73 950 aa20.53■□□□□ 0.88
CCDC3-201ENST00000378825 PCDHA8Q9Y5H6 950 aa20.53■□□□□ 0.88
CCDC3-201ENST00000378825 CCDC194A0A1B0GVG4 234 aa20.53■□□□□ 0.88
CCDC3-201ENST00000378825 TSPY2A6NKD2 308 aa20.53■□□□□ 0.88
CCDC3-201ENST00000378825 KIAA0895Q8NCT3 520 aa20.53■□□□□ 0.88
CCDC3-201ENST00000378825 MTMR8Q96EF0 704 aa20.53■□□□□ 0.88
CCDC3-201ENST00000378825 PYM1Q9BRP8 204 aaKnown RBP20.53■□□□□ 0.88
CCDC3-201ENST00000378825 PCDHA4Q9UN74 947 aa20.53■□□□□ 0.88
CCDC3-201ENST00000378825 ZEB2O60315 1214 aa20.52■□□□□ 0.88
CCDC3-201ENST00000378825 FGRP09769 529 aa20.52■□□□□ 0.88
CCDC3-201ENST00000378825 FLT1P17948 1338 aa20.52■□□□□ 0.88
CCDC3-201ENST00000378825 CCNE1P24864 410 aa20.52■□□□□ 0.88
CCDC3-201ENST00000378825 RNASE9P60153 205 aaKnown RBP20.52■□□□□ 0.88
CCDC3-201ENST00000378825 AMOTL1Q8IY63 956 aa20.52■□□□□ 0.88
CCDC3-201ENST00000378825 BRIP1Q9BX63 1249 aa20.52■□□□□ 0.88
CCDC3-201ENST00000378825 TRIM9Q9C026 710 aa20.52■□□□□ 0.88
CCDC3-201ENST00000378825 MMRN2Q9H8L6 949 aa20.52■□□□□ 0.88
CCDC3-201ENST00000378825 GLI1P08151 1106 aa20.52■□□□□ 0.87
CCDC3-201ENST00000378825 CARSP49589 748 aaKnown RBP20.52■□□□□ 0.87
CCDC3-201ENST00000378825 GFPT1Q06210 699 aaPredicted RBP20.52■□□□□ 0.87
CCDC3-201ENST00000378825 FNBP4Q8N3X1 1017 aaPredicted RBP20.52■□□□□ 0.87
CCDC3-201ENST00000378825 LINC00116Q8NCU8 138 aa20.52■□□□□ 0.87
CCDC3-201ENST00000378825 TRIM58Q8NG06 486 aa20.52■□□□□ 0.87
CCDC3-201ENST00000378825 CELF1Q92879 486 aaKnown RBP20.52■□□□□ 0.87
CCDC3-201ENST00000378825 DCP1AQ9NPI6 582 aaPredicted RBP20.52■□□□□ 0.87
CCDC3-201ENST00000378825 TACC1O75410 805 aa20.51■□□□□ 0.87
CCDC3-201ENST00000378825 MMS22LQ6ZRQ5 1243 aa20.51■□□□□ 0.87
CCDC3-201ENST00000378825 HEATR3Q7Z4Q2 680 aa20.51■□□□□ 0.87
CCDC3-201ENST00000378825 STIM2Q9P246 746 aa20.51■□□□□ 0.87
CCDC3-201ENST00000378825 LRRC53A6NM62 1247 aa20.51■□□□□ 0.87
CCDC3-201ENST00000378825 M0R2N6 131 aa20.51■□□□□ 0.87
CCDC3-201ENST00000378825 CYTH3O43739 400 aa20.51■□□□□ 0.87
CCDC3-201ENST00000378825 RRAGAQ7L523 313 aa20.51■□□□□ 0.87
CCDC3-201ENST00000378825 TLR10Q9BXR5 811 aa20.51■□□□□ 0.87
CCDC3-201ENST00000378825 DEF6Q9H4E7 631 aa20.51■□□□□ 0.87
CCDC3-201ENST00000378825 NFU1Q9UMS0 254 aa20.51■□□□□ 0.87
CCDC3-201ENST00000378825 AKR1B10O60218 316 aa20.5■□□□□ 0.87
CCDC3-201ENST00000378825 GOLGA8HP0CJ92 632 aa20.5■□□□□ 0.87
CCDC3-201ENST00000378825 RASSF7Q02833 373 aa20.5■□□□□ 0.87
CCDC3-201ENST00000378825 CCDC181Q5TID7 509 aa20.5■□□□□ 0.87
CCDC3-201ENST00000378825 GLIS3Q8NEA6 775 aa20.5■□□□□ 0.87
CCDC3-201ENST00000378825 DHTKD1Q96HY7 919 aaPredicted RBP20.5■□□□□ 0.87
CCDC3-201ENST00000378825 NUP58Q9BVL2 599 aa20.5■□□□□ 0.87
CCDC3-201ENST00000378825 IL17RBQ9NRM6 502 aa20.5■□□□□ 0.87
CCDC3-201ENST00000378825 PLAGL2Q9UPG8 496 aa20.5■□□□□ 0.87
CCDC3-201ENST00000378825 USP17L8P0C7I0 530 aa20.5■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms