RNA–Protein interactions for RNA: ENST00000374747.9

NPLOC4-202, Transcript of NPL4 homolog, ubiquitin recognition factor, humanhuman

TSL 2 BASIC

Gene NPLOC4, Length 5,538 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPLOC4-202ENST00000374747 LIG3P49916 1009 aa13.48□□□□□ -0.25
NPLOC4-202ENST00000374747 STRN3Q13033 797 aa13.48□□□□□ -0.25
NPLOC4-202ENST00000374747 NCAPH2Q6IBW4 605 aa13.48□□□□□ -0.25
NPLOC4-202ENST00000374747 CCDC17Q96LX7 622 aa13.48□□□□□ -0.25
NPLOC4-202ENST00000374747 DNM3Q9UQ16 869 aa13.48□□□□□ -0.25
NPLOC4-202ENST00000374747 ERCC3P19447 782 aa13.48□□□□□ -0.25
NPLOC4-202ENST00000374747 RBM6P78332 1123 aaKnown RBP13.48□□□□□ -0.25
NPLOC4-202ENST00000374747 GALNT17Q6IS24 598 aa13.48□□□□□ -0.25
NPLOC4-202ENST00000374747 NOSTRINQ8IVI9 506 aa13.48□□□□□ -0.25
NPLOC4-202ENST00000374747 PUS7LQ9H0K6 701 aaKnown RBP13.48□□□□□ -0.25
NPLOC4-202ENST00000374747 HAUS4Q9H6D7 363 aa13.48□□□□□ -0.25
NPLOC4-202ENST00000374747 NLRC4Q9NPP4 1024 aa13.48□□□□□ -0.25
NPLOC4-202ENST00000374747 KCNJ18B7U540 433 aa13.48□□□□□ -0.25
NPLOC4-202ENST00000374747 NR1I2O75469 434 aa13.48□□□□□ -0.25
NPLOC4-202ENST00000374747 TCP1P17987 556 aaKnown RBP13.48□□□□□ -0.25
NPLOC4-202ENST00000374747 KCNJ12Q14500 433 aa13.48□□□□□ -0.25
NPLOC4-202ENST00000374747 CERKLQ49MI3 558 aaPredicted RBP13.48□□□□□ -0.25
NPLOC4-202ENST00000374747 SRGAP1Q7Z6B7 1085 aa13.48□□□□□ -0.25
NPLOC4-202ENST00000374747 CERKQ8TCT0 537 aa13.48□□□□□ -0.25
NPLOC4-202ENST00000374747 ATP2A3Q93084 1043 aa13.48□□□□□ -0.25
NPLOC4-202ENST00000374747 VCX3AQ9NNX9 186 aa13.48□□□□□ -0.25
NPLOC4-202ENST00000374747 DAPK3O43293 454 aa13.48□□□□□ -0.25
NPLOC4-202ENST00000374747 ATP1A2P50993 1020 aa13.48□□□□□ -0.25
NPLOC4-202ENST00000374747 NELFCDQ8IXH7 590 aa13.48□□□□□ -0.25
NPLOC4-202ENST00000374747 SPATA31A1Q5TZJ5 1347 aa13.48□□□□□ -0.25
NPLOC4-202ENST00000374747 hCG_1642624A0A1W2PR95 340 aa13.47□□□□□ -0.25
NPLOC4-202ENST00000374747 PSDA5PKW4 1024 aaPredicted RBP13.47□□□□□ -0.25
NPLOC4-202ENST00000374747 NT5C2P49902 561 aa13.47□□□□□ -0.25
NPLOC4-202ENST00000374747 APBA1Q02410 837 aa13.47□□□□□ -0.25
NPLOC4-202ENST00000374747 CALCRLQ16602 461 aa13.47□□□□□ -0.25
NPLOC4-202ENST00000374747 STAMQ92783 540 aa13.47□□□□□ -0.25
NPLOC4-202ENST00000374747 PLEKHG2Q9H7P9 1386 aa13.47□□□□□ -0.25
NPLOC4-202ENST00000374747 SMCO2A6NFE2 343 aa13.47□□□□□ -0.25
NPLOC4-202ENST00000374747 DKC1O60832 514 aaKnown RBP eCLIP13.47□□□□□ -0.252e-25■■■■□ 26.2
NPLOC4-202ENST00000374747 SCRN1Q12765 414 aa13.47□□□□□ -0.25
NPLOC4-202ENST00000374747 CCDC89Q8N998 374 aa13.47□□□□□ -0.25
NPLOC4-202ENST00000374747 ZNF526Q8TF50 670 aaPredicted RBP13.47□□□□□ -0.25
NPLOC4-202ENST00000374747 PIH1D3Q9NQM4 214 aaKnown RBP13.47□□□□□ -0.25
NPLOC4-202ENST00000374747 PLEKHA4Q9H4M7 779 aa13.47□□□□□ -0.25
NPLOC4-202ENST00000374747 TBC1D7Q9P0N9 293 aa13.47□□□□□ -0.25
NPLOC4-202ENST00000374747 CARMIL3Q8ND23 1372 aa13.47□□□□□ -0.25
NPLOC4-202ENST00000374747 CEMIPQ8WUJ3 1361 aa13.47□□□□□ -0.25
NPLOC4-202ENST00000374747 SETD1AO15047 1707 aaKnown RBP13.47□□□□□ -0.25
NPLOC4-202ENST00000374747 KRIT1O00522 736 aa13.47□□□□□ -0.25
NPLOC4-202ENST00000374747 SCG2P13521 617 aa13.47□□□□□ -0.25
NPLOC4-202ENST00000374747 CA8P35219 290 aa13.47□□□□□ -0.25
NPLOC4-202ENST00000374747 DCAF15Q66K64 600 aa13.47□□□□□ -0.25
NPLOC4-202ENST00000374747 LCORLQ8N3X6 602 aa13.47□□□□□ -0.25
NPLOC4-202ENST00000374747 MYO1AQ9UBC5 1043 aa13.47□□□□□ -0.25
NPLOC4-202ENST00000374747 RFX7Q2KHR2 1363 aa13.47□□□□□ -0.25
NPLOC4-202ENST00000374747 TTC36A6NLP5 189 aa13.47□□□□□ -0.25
NPLOC4-202ENST00000374747 KLRF2D3W0D1 207 aa13.47□□□□□ -0.25
NPLOC4-202ENST00000374747 KCNK3O14649 394 aa13.47□□□□□ -0.25
NPLOC4-202ENST00000374747 GCNT3O95395 438 aa13.47□□□□□ -0.25
NPLOC4-202ENST00000374747 DYNLL1P63167 89 aaKnown RBP13.47□□□□□ -0.25
NPLOC4-202ENST00000374747 CUL4AQ13619 759 aa13.47□□□□□ -0.25
NPLOC4-202ENST00000374747 TRIM68Q6AZZ1 485 aa13.47□□□□□ -0.25
NPLOC4-202ENST00000374747 BLIDQ8IZY5 108 aa13.47□□□□□ -0.25
NPLOC4-202ENST00000374747 TRIML1Q8N9V2 468 aa13.47□□□□□ -0.25
NPLOC4-202ENST00000374747 LUC7L3O95232 432 aaKnown RBP13.46□□□□□ -0.25
NPLOC4-202ENST00000374747 MMP10P09238 476 aa13.46□□□□□ -0.25
NPLOC4-202ENST00000374747 MCAMP43121 646 aa13.46□□□□□ -0.25
NPLOC4-202ENST00000374747 PDE1CQ14123 709 aaPredicted RBP13.46□□□□□ -0.25
NPLOC4-202ENST00000374747 NECTIN1Q15223 517 aa13.46□□□□□ -0.25
NPLOC4-202ENST00000374747 RNF168Q8IYW5 571 aaPredicted RBP13.46□□□□□ -0.25
NPLOC4-202ENST00000374747 MYCT1Q8N699 235 aa13.46□□□□□ -0.25
NPLOC4-202ENST00000374747 MASTLQ96GX5 879 aa13.46□□□□□ -0.25
NPLOC4-202ENST00000374747 CPDO75976 1380 aa13.46□□□□□ -0.25
NPLOC4-202ENST00000374747 DNM2P50570 870 aa13.46□□□□□ -0.25
NPLOC4-202ENST00000374747 MORC3Q14149 939 aa13.46□□□□□ -0.25
NPLOC4-202ENST00000374747 APOA5Q6Q788 366 aa13.46□□□□□ -0.25
NPLOC4-202ENST00000374747 LSM14BQ9BX40 385 aaKnown RBP13.46□□□□□ -0.25
NPLOC4-202ENST00000374747 COA1Q9GZY4 146 aa13.46□□□□□ -0.25
NPLOC4-202ENST00000374747 AS3MTQ9HBK9 375 aa13.46□□□□□ -0.25
NPLOC4-202ENST00000374747 SLIT1O75093 1534 aa13.46□□□□□ -0.25
NPLOC4-202ENST00000374747 PXDNLA1KZ92 1463 aa13.46□□□□□ -0.25
NPLOC4-202ENST00000374747 ATP8B1O43520 1251 aa13.46□□□□□ -0.25
NPLOC4-202ENST00000374747 KCNQ2O43526 872 aa13.46□□□□□ -0.25
NPLOC4-202ENST00000374747 RABL6Q3YEC7 729 aaPredicted RBP13.46□□□□□ -0.25
NPLOC4-202ENST00000374747 CASC4Q6P4E1 433 aa13.46□□□□□ -0.25
NPLOC4-202ENST00000374747 RABGGTAQ92696 567 aa13.46□□□□□ -0.25
NPLOC4-202ENST00000374747 RNF34Q969K3 372 aa13.46□□□□□ -0.25
NPLOC4-202ENST00000374747 MRPL44Q9H9J2 332 aaKnown RBP13.46□□□□□ -0.25
NPLOC4-202ENST00000374747 STAT1P42224 750 aa13.46□□□□□ -0.26
NPLOC4-202ENST00000374747 BARGINQ6ZT62 677 aa13.46□□□□□ -0.26
NPLOC4-202ENST00000374747 CCDC117Q8IWD4 279 aaPredicted RBP13.46□□□□□ -0.26
NPLOC4-202ENST00000374747 STAG1Q8WVM7 1258 aa13.46□□□□□ -0.26
NPLOC4-202ENST00000374747 ARHGEF1Q92888 912 aaKnown RBP13.46□□□□□ -0.26
NPLOC4-202ENST00000374747 EIF2AK3Q9NZJ5 1116 aaKnown RBP13.46□□□□□ -0.26
NPLOC4-202ENST00000374747 EPB41L3Q9Y2J2 1087 aaPredicted RBP13.46□□□□□ -0.26
NPLOC4-202ENST00000374747 FAN1Q9Y2M0 1017 aa13.46□□□□□ -0.26
NPLOC4-202ENST00000374747 FOXO4P98177 505 aa13.45□□□□□ -0.26
NPLOC4-202ENST00000374747 SNCBQ16143 134 aa13.45□□□□□ -0.26
NPLOC4-202ENST00000374747 FBXO18Q8NFZ0 1043 aa13.45□□□□□ -0.26
NPLOC4-202ENST00000374747 U2AF1L4Q8WU68 220 aaKnown RBP13.45□□□□□ -0.26
NPLOC4-202ENST00000374747 ICA1Q05084 483 aa13.45□□□□□ -0.26
NPLOC4-202ENST00000374747 TBC1D9BQ66K14 1250 aa13.45□□□□□ -0.26
NPLOC4-202ENST00000374747 GRK7Q8WTQ7 553 aa13.45□□□□□ -0.26
NPLOC4-202ENST00000374747 PLA2G12BQ9BX93 195 aa13.45□□□□□ -0.26
NPLOC4-202ENST00000374747 PDE11AQ9HCR9 933 aa13.45□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms