RNA–Protein interactions for RNA: ENST00000370496.3

COL9A1-204, Transcript of collagen type IX alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL9A1, Length 1,372 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1-204ENST00000370496 TPCN1Q9ULQ1 816 aa17.14■□□□□ 0.33
COL9A1-204ENST00000370496 SYNGAP1Q96PV0 1343 aa17.13■□□□□ 0.33
COL9A1-204ENST00000370496 CFBP00751 764 aa17.13■□□□□ 0.33
COL9A1-204ENST00000370496 SOX10P56693 466 aa17.13■□□□□ 0.33
COL9A1-204ENST00000370496 AKAP17AQ02040 695 aaKnown RBP17.13■□□□□ 0.33
COL9A1-204ENST00000370496 FUT2Q10981 343 aa17.13■□□□□ 0.33
COL9A1-204ENST00000370496 RABEP1Q15276 862 aa17.13■□□□□ 0.33
COL9A1-204ENST00000370496 CPLX2Q6PUV4 134 aaKnown RBP17.13■□□□□ 0.33
COL9A1-204ENST00000370496 ZNF467Q7Z7K2 595 aaPredicted RBP17.13■□□□□ 0.33
COL9A1-204ENST00000370496 MSL3Q8N5Y2 521 aaKnown RBP17.13■□□□□ 0.33
COL9A1-204ENST00000370496 GPKOWQ92917 476 aaPredicted RBP eCLIP17.13■□□□□ 0.33
COL9A1-204ENST00000370496 XRN2Q9H0D6 950 aaKnown RBP eCLIP17.13■□□□□ 0.33
COL9A1-204ENST00000370496 HMX1Q9NP08 348 aaPredicted RBP17.13■□□□□ 0.33
COL9A1-204ENST00000370496 RBM27Q9P2N5 1060 aaKnown RBP17.13■□□□□ 0.33
COL9A1-204ENST00000370496 CNPY2Q9Y2B0 182 aa17.13■□□□□ 0.33
COL9A1-204ENST00000370496 RPTORQ8N122 1335 aa17.12■□□□□ 0.33
COL9A1-204ENST00000370496 MAP3K21Q5TCX8 1036 aa17.12■□□□□ 0.33
COL9A1-204ENST00000370496 RGS22Q8NE09 1264 aa17.12■□□□□ 0.33
COL9A1-204ENST00000370496 FGD4Q96M96 766 aa17.12■□□□□ 0.33
COL9A1-204ENST00000370496 MPHOSPH6Q99547 160 aaKnown RBP17.12■□□□□ 0.33
COL9A1-204ENST00000370496 KIF2CQ99661 725 aa17.12■□□□□ 0.33
COL9A1-204ENST00000370496 MAF1Q9H063 256 aa17.12■□□□□ 0.33
COL9A1-204ENST00000370496 V9GY48 417 aaPredicted RBP17.12■□□□□ 0.33
COL9A1-204ENST00000370496 BRCA2P51587 3418 aa17.11■□□□□ 0.33
COL9A1-204ENST00000370496 SOWAHBA6NEL2 793 aa17.11■□□□□ 0.33
COL9A1-204ENST00000370496 ASB14A6NK59 587 aa17.11■□□□□ 0.33
COL9A1-204ENST00000370496 OPLAHO14841 1288 aa17.11■□□□□ 0.33
COL9A1-204ENST00000370496 CNGA1P29973 690 aa17.11■□□□□ 0.33
COL9A1-204ENST00000370496 CCND3P30281 292 aaPredicted RBP17.11■□□□□ 0.33
COL9A1-204ENST00000370496 ALDH5A1P51649 535 aaPredicted RBP17.11■□□□□ 0.33
COL9A1-204ENST00000370496 WWC2Q6AWC2 1192 aa17.11■□□□□ 0.33
COL9A1-204ENST00000370496 MAMDC4Q6UXC1 1216 aa17.11■□□□□ 0.33
COL9A1-204ENST00000370496 ARMCX2Q7L311 632 aa17.11■□□□□ 0.33
COL9A1-204ENST00000370496 TRIM22Q8IYM9 498 aa17.11■□□□□ 0.33
COL9A1-204ENST00000370496 PHKBQ93100 1093 aa17.11■□□□□ 0.33
COL9A1-204ENST00000370496 PURBQ96QR8 312 aaKnown RBP17.11■□□□□ 0.33
COL9A1-204ENST00000370496 SLC26A6Q9BXS9 759 aa17.11■□□□□ 0.33
COL9A1-204ENST00000370496 GCOM1H8Y6P7 765 aaPredicted RBP17.1■□□□□ 0.33
COL9A1-204ENST00000370496 hCG_1984214I3L0E3 225 aa17.1■□□□□ 0.33
COL9A1-204ENST00000370496 ST18O60284 1047 aa17.1■□□□□ 0.33
COL9A1-204ENST00000370496 PFKFB2O60825 505 aa17.1■□□□□ 0.33
COL9A1-204ENST00000370496 PPFIA3O75145 1194 aa17.1■□□□□ 0.33
COL9A1-204ENST00000370496 CDKL5O76039 1030 aa17.1■□□□□ 0.33
COL9A1-204ENST00000370496 POLR2MP0CAP2 368 aa17.1■□□□□ 0.33
COL9A1-204ENST00000370496 CYBAP13498 195 aa17.1■□□□□ 0.33
COL9A1-204ENST00000370496 IFNAR1P17181 557 aa17.1■□□□□ 0.33
COL9A1-204ENST00000370496 HSD17B4P51659 736 aa17.1■□□□□ 0.33
COL9A1-204ENST00000370496 NAPAP54920 295 aa17.1■□□□□ 0.33
COL9A1-204ENST00000370496 SCRN1Q12765 414 aa17.1■□□□□ 0.33
COL9A1-204ENST00000370496 PPP1R18Q6NYC8 613 aa17.1■□□□□ 0.33
COL9A1-204ENST00000370496 ZNF713Q8N859 430 aaPredicted RBP17.1■□□□□ 0.33
COL9A1-204ENST00000370496 SYTL5Q8TDW5 730 aaPredicted RBP17.1■□□□□ 0.33
COL9A1-204ENST00000370496 CUL5Q93034 780 aa17.1■□□□□ 0.33
COL9A1-204ENST00000370496 RNF26Q9BY78 433 aaPredicted RBP17.1■□□□□ 0.33
COL9A1-204ENST00000370496 CDKN2AIPQ9NXV6 580 aaPredicted RBP17.1■□□□□ 0.33
COL9A1-204ENST00000370496 ZHX1Q9UKY1 873 aaPredicted RBP17.1■□□□□ 0.33
COL9A1-204ENST00000370496 ASTN1O14525 1302 aa17.1■□□□□ 0.33
COL9A1-204ENST00000370496 IGHA2P01877 340 aa17.09■□□□□ 0.33
COL9A1-204ENST00000370496 SCG2P13521 617 aa17.09■□□□□ 0.33
COL9A1-204ENST00000370496 HOXA13P31271 388 aaPredicted RBP17.09■□□□□ 0.33
COL9A1-204ENST00000370496 NTRK3Q16288 839 aa17.09■□□□□ 0.33
COL9A1-204ENST00000370496 DNERQ8NFT8 737 aa17.09■□□□□ 0.33
COL9A1-204ENST00000370496 TBC1D5Q92609 795 aa17.09■□□□□ 0.33
COL9A1-204ENST00000370496 DEFB118Q96PH6 123 aa17.09■□□□□ 0.33
COL9A1-204ENST00000370496 PAK6Q9NQU5 681 aaPredicted RBP17.09■□□□□ 0.33
COL9A1-204ENST00000370496 NRBP1Q9UHY1 535 aa17.09■□□□□ 0.33
COL9A1-204ENST00000370496 B4DLN1 442 aa17.08■□□□□ 0.32
COL9A1-204ENST00000370496 PRPF3O43395 683 aaKnown RBP17.08■□□□□ 0.32
COL9A1-204ENST00000370496 LARGE1O95461 756 aa17.08■□□□□ 0.32
COL9A1-204ENST00000370496 GJB1P08034 283 aa17.08■□□□□ 0.32
COL9A1-204ENST00000370496 MRPL12P52815 198 aaKnown RBP17.08■□□□□ 0.32
COL9A1-204ENST00000370496 GHRHRQ02643 423 aa17.08■□□□□ 0.32
COL9A1-204ENST00000370496 PDE4DQ08499 809 aa17.08■□□□□ 0.32
COL9A1-204ENST00000370496 SSRP1Q08945 709 aaKnown RBP17.08■□□□□ 0.32
COL9A1-204ENST00000370496 ME3Q16798 604 aa17.08■□□□□ 0.32
COL9A1-204ENST00000370496 PFKFB3Q16875 520 aaPredicted RBP17.08■□□□□ 0.32
COL9A1-204ENST00000370496 PRAMEF19Q5SWL8 479 aa17.08■□□□□ 0.32
COL9A1-204ENST00000370496 SAMD3Q8N6K7 520 aa17.08■□□□□ 0.32
COL9A1-204ENST00000370496 SMARCC2Q8TAQ2 1214 aa17.08■□□□□ 0.32
COL9A1-204ENST00000370496 GTF3C6Q969F1 213 aa17.08■□□□□ 0.32
COL9A1-204ENST00000370496 RMDN3Q96TC7 470 aa17.08■□□□□ 0.32
COL9A1-204ENST00000370496 BARHL2Q9NY43 387 aa17.08■□□□□ 0.32
COL9A1-204ENST00000370496 MAP3K20Q9NYL2 800 aaKnown RBP17.08■□□□□ 0.32
COL9A1-204ENST00000370496 COL20A1Q9P218 1284 aa17.08■□□□□ 0.32
COL9A1-204ENST00000370496 LIMCH1Q9UPQ0 1083 aa17.08■□□□□ 0.32
COL9A1-204ENST00000370496 LOC102724159A0A0B4J2E5 919 aa17.07■□□□□ 0.32
COL9A1-204ENST00000370496 POTEFA5A3E0 1075 aa17.07■□□□□ 0.32
COL9A1-204ENST00000370496 STXBP3O00186 592 aa17.07■□□□□ 0.32
COL9A1-204ENST00000370496 PWP2Q15269 919 aaKnown RBP17.07■□□□□ 0.32
COL9A1-204ENST00000370496 ARHGEF16Q5VV41 709 aa17.07■□□□□ 0.32
COL9A1-204ENST00000370496 FCHSD1Q86WN1 690 aa17.07■□□□□ 0.32
COL9A1-204ENST00000370496 NECAB1Q8N987 351 aa17.07■□□□□ 0.32
COL9A1-204ENST00000370496 TRPV1Q8NER1 839 aa17.07■□□□□ 0.32
COL9A1-204ENST00000370496 NSUN6Q8TEA1 469 aaKnown RBP17.07■□□□□ 0.32
COL9A1-204ENST00000370496 U2AF1L4Q8WU68 220 aaKnown RBP17.07■□□□□ 0.32
COL9A1-204ENST00000370496 CCDC12Q8WUD4 166 aaPredicted RBP17.07■□□□□ 0.32
COL9A1-204ENST00000370496 ABHD16BQ9H3Z7 469 aa17.07■□□□□ 0.32
COL9A1-204ENST00000370496 PSTPIP2Q9H939 334 aa17.07■□□□□ 0.32
COL9A1-204ENST00000370496 DDX49Q9Y6V7 483 aaKnown RBP17.07■□□□□ 0.32
COL9A1-204ENST00000370496 SEPT4O43236 478 aa17.06■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms