RNA–Protein interactions for RNA: ENST00000356352.6

UPF2-201, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF2, Length 5,569 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-201ENST00000356352 RFX6Q8HWS3 928 aa7.05□□□□□ -1.28
UPF2-201ENST00000356352 RNF169Q8NCN4 708 aa7.05□□□□□ -1.28
UPF2-201ENST00000356352 PNMA1Q8ND90 353 aa7.05□□□□□ -1.28
UPF2-201ENST00000356352 USP21Q9UK80 565 aa7.05□□□□□ -1.28
UPF2-201ENST00000356352 H7C0C1 242 aa7.05□□□□□ -1.28
UPF2-201ENST00000356352 GCFC2P16383 781 aaKnown RBP7.05□□□□□ -1.28
UPF2-201ENST00000356352 ATP5OP48047 213 aa7.05□□□□□ -1.28
UPF2-201ENST00000356352 SURF1Q15526 300 aa7.05□□□□□ -1.28
UPF2-201ENST00000356352 ZBTB38Q8NAP3 1195 aaPredicted RBP7.05□□□□□ -1.28
UPF2-201ENST00000356352 POMGNT1Q8WZA1 660 aa7.05□□□□□ -1.28
UPF2-201ENST00000356352 DACT3Q96B18 629 aaPredicted RBP7.05□□□□□ -1.28
UPF2-201ENST00000356352 ACCSQ96QU6 501 aa7.05□□□□□ -1.28
UPF2-201ENST00000356352 PSMB7Q99436 277 aa7.05□□□□□ -1.28
UPF2-201ENST00000356352 AP5M1Q9H0R1 490 aa7.05□□□□□ -1.28
UPF2-201ENST00000356352 TMEM206Q9H813 350 aa7.05□□□□□ -1.28
UPF2-201ENST00000356352 KLRF2D3W0D1 207 aa7.04□□□□□ -1.28
UPF2-201ENST00000356352 A1BGP04217 495 aa7.04□□□□□ -1.28
UPF2-201ENST00000356352 HSPA6P17066 643 aa7.04□□□□□ -1.28
UPF2-201ENST00000356352 BTDP43251 543 aa7.04□□□□□ -1.28
UPF2-201ENST00000356352 EIF4A1P60842 406 aaKnown RBP7.04□□□□□ -1.28
UPF2-201ENST00000356352 POLR2FP61218 127 aaKnown RBP7.04□□□□□ -1.28
UPF2-201ENST00000356352 EXOC3L4Q17RC7 722 aa7.04□□□□□ -1.28
UPF2-201ENST00000356352 SLFN13Q68D06 897 aa7.04□□□□□ -1.28
UPF2-201ENST00000356352 TRMT44Q8IYL2 757 aaKnown RBP7.04□□□□□ -1.28
UPF2-201ENST00000356352 PDZD8Q8NEN9 1154 aa7.04□□□□□ -1.28
UPF2-201ENST00000356352 EIF2AQ9BY44 585 aaKnown RBP7.04□□□□□ -1.28
UPF2-201ENST00000356352 WDR11Q9BZH6 1224 aa7.04□□□□□ -1.28
UPF2-201ENST00000356352 RABEP2Q9H5N1 569 aa7.04□□□□□ -1.28
UPF2-201ENST00000356352 BAIAP2L1Q9UHR4 511 aa7.04□□□□□ -1.28
UPF2-201ENST00000356352 LCMT1Q9UIC8 334 aa7.04□□□□□ -1.28
UPF2-201ENST00000356352 LRFN2Q9ULH4 789 aa7.04□□□□□ -1.28
UPF2-201ENST00000356352 SLC8A2Q9UPR5 921 aa7.04□□□□□ -1.28
UPF2-201ENST00000356352 ZNF148Q9UQR1 794 aa7.04□□□□□ -1.28
UPF2-201ENST00000356352 PHLPP2Q6ZVD8 1323 aa7.04□□□□□ -1.28
UPF2-201ENST00000356352 USP17L12C9JPN9 530 aa7.04□□□□□ -1.28
UPF2-201ENST00000356352 USP17L21D6R901 530 aa7.04□□□□□ -1.28
UPF2-201ENST00000356352 PCCAP05165 728 aaPredicted RBP7.04□□□□□ -1.28
UPF2-201ENST00000356352 CDC25BP30305 580 aa7.04□□□□□ -1.28
UPF2-201ENST00000356352 PSMC2P35998 433 aaKnown RBP7.04□□□□□ -1.28
UPF2-201ENST00000356352 GUCY2FP51841 1108 aa7.04□□□□□ -1.28
UPF2-201ENST00000356352 IQCB1Q15051 598 aa7.04□□□□□ -1.28
UPF2-201ENST00000356352 FAM98CQ17RN3 349 aaKnown RBP7.04□□□□□ -1.28
UPF2-201ENST00000356352 ABCB5Q2M3G0 1257 aa7.04□□□□□ -1.28
UPF2-201ENST00000356352 C10orf76Q5T2E6 689 aa7.04□□□□□ -1.28
UPF2-201ENST00000356352 DNAJC10Q8IXB1 793 aa7.04□□□□□ -1.28
UPF2-201ENST00000356352 PPM1KQ8N3J5 372 aa7.04□□□□□ -1.28
UPF2-201ENST00000356352 FNBP4Q8N3X1 1017 aaPredicted RBP7.04□□□□□ -1.28
UPF2-201ENST00000356352 AMNQ9BXJ7 453 aa7.04□□□□□ -1.28
UPF2-201ENST00000356352 CAPS2Q9BXY5 557 aa7.04□□□□□ -1.28
UPF2-201ENST00000356352 SNX25Q9H3E2 840 aa7.04□□□□□ -1.28
UPF2-201ENST00000356352 STK38LQ9Y2H1 464 aa7.04□□□□□ -1.28
UPF2-201ENST00000356352 PPP2R2CQ9Y2T4 447 aa7.04□□□□□ -1.28
UPF2-201ENST00000356352 JRKLQ9Y4A0 524 aa7.04□□□□□ -1.28
UPF2-201ENST00000356352 ABCC12Q96J65 1359 aa7.04□□□□□ -1.28
UPF2-201ENST00000356352 FRMPD2Q68DX3 1309 aaPredicted RBP7.04□□□□□ -1.28
UPF2-201ENST00000356352 LRRIQ4A6NIV6 560 aa7.04□□□□□ -1.28
UPF2-201ENST00000356352 OPHN1O60890 802 aa7.04□□□□□ -1.28
UPF2-201ENST00000356352 SMIM24O75264 130 aa7.04□□□□□ -1.28
UPF2-201ENST00000356352 CCND2P30279 289 aa7.04□□□□□ -1.28
UPF2-201ENST00000356352 PPARGP37231 505 aaPredicted RBP7.04□□□□□ -1.28
UPF2-201ENST00000356352 SEPT2Q15019 361 aa7.04□□□□□ -1.28
UPF2-201ENST00000356352 ODR4Q5SWX8 454 aa7.04□□□□□ -1.28
UPF2-201ENST00000356352 RNF168Q8IYW5 571 aaPredicted RBP7.04□□□□□ -1.28
UPF2-201ENST00000356352 SKA2Q8WVK7 121 aaPredicted RBP7.04□□□□□ -1.28
UPF2-201ENST00000356352 TNKSO95271 1327 aa7.04□□□□□ -1.28
UPF2-201ENST00000356352 ATP10AO60312 1499 aa7.04□□□□□ -1.28
UPF2-201ENST00000356352 CIAO1O76071 339 aa7.04□□□□□ -1.28
UPF2-201ENST00000356352 SUN1O94901 812 aa7.04□□□□□ -1.28
UPF2-201ENST00000356352 YWHAGP61981 247 aaKnown RBP eCLIP7.04□□□□□ -1.28
UPF2-201ENST00000356352 ALCAMQ13740 583 aa7.04□□□□□ -1.28
UPF2-201ENST00000356352 UBE3CQ15386 1083 aa7.04□□□□□ -1.28
UPF2-201ENST00000356352 FAM135BQ49AJ0 1406 aa7.04□□□□□ -1.28
UPF2-201ENST00000356352 CFAP61Q8NHU2 1237 aa7.04□□□□□ -1.28
UPF2-201ENST00000356352 KLHDC4Q8TBB5 520 aa7.04□□□□□ -1.28
UPF2-201ENST00000356352 MRFAP1L1Q96HT8 127 aa7.04□□□□□ -1.28
UPF2-201ENST00000356352 DHTKD1Q96HY7 919 aaPredicted RBP7.04□□□□□ -1.28
UPF2-201ENST00000356352 EFHD1Q9BUP0 239 aa7.04□□□□□ -1.28
UPF2-201ENST00000356352 BICRAQ9NZM4 1560 aa7.04□□□□□ -1.28
UPF2-201ENST00000356352 TNNQ9UQP3 1299 aa7.04□□□□□ -1.28
UPF2-201ENST00000356352 NUB1Q9Y5A7 615 aa7.04□□□□□ -1.28
UPF2-201ENST00000356352 ADCY9O60503 1353 aa7.04□□□□□ -1.28
UPF2-201ENST00000356352 NUP153P49790 1475 aaKnown RBP7.04□□□□□ -1.28
UPF2-201ENST00000356352 BRD1O95696 1058 aa7.03□□□□□ -1.28
UPF2-201ENST00000356352 DLATP10515 647 aaKnown RBP7.03□□□□□ -1.28
UPF2-201ENST00000356352 EEF1GP26641 437 aaKnown RBP7.03□□□□□ -1.28
UPF2-201ENST00000356352 PDE1BQ01064 536 aa7.03□□□□□ -1.28
UPF2-201ENST00000356352 GPR108Q9NPR9 543 aa7.03□□□□□ -1.28
UPF2-201ENST00000356352 LEMD3Q9Y2U8 911 aa7.03□□□□□ -1.28
UPF2-201ENST00000356352 PCDHB4Q9Y5E5 795 aa7.03□□□□□ -1.28
UPF2-201ENST00000356352 MAD1L1Q9Y6D9 718 aa7.03□□□□□ -1.28
UPF2-201ENST00000356352 KIAA0556O60303 1618 aa7.03□□□□□ -1.28
UPF2-201ENST00000356352 XDHP47989 1333 aa7.03□□□□□ -1.28
UPF2-201ENST00000356352 MYO1FO00160 1098 aa7.03□□□□□ -1.28
UPF2-201ENST00000356352 HGSO14964 777 aaPredicted RBP7.03□□□□□ -1.28
UPF2-201ENST00000356352 PPP6R2O75170 966 aa7.03□□□□□ -1.28
UPF2-201ENST00000356352 PHEXP78562 749 aa7.03□□□□□ -1.28
UPF2-201ENST00000356352 CDC37Q16543 378 aaPredicted RBP7.03□□□□□ -1.28
UPF2-201ENST00000356352 RAPH1Q70E73 1250 aa7.03□□□□□ -1.28
UPF2-201ENST00000356352 SESTD1Q86VW0 696 aa7.03□□□□□ -1.28
UPF2-201ENST00000356352 UBE2Q2Q8WVN8 375 aa7.03□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms