RNA–Protein interactions for RNA: ENST00000356000.7

RTN3-205, Transcript of reticulon 3, humanhuman

TSL 2 BASIC

Gene RTN3, Length 2,645 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-205ENST00000356000 NRKQ7Z2Y5 1582 aa17.38■□□□□ 0.37
RTN3-205ENST00000356000 RFX7Q2KHR2 1363 aa17.38■□□□□ 0.37
RTN3-205ENST00000356000 RBM47A0AV96 593 aaKnown RBP17.38■□□□□ 0.37
RTN3-205ENST00000356000 PHF20L1A8MW92 1017 aa17.38■□□□□ 0.37
RTN3-205ENST00000356000 BACH1O14867 736 aa17.38■□□□□ 0.37
RTN3-205ENST00000356000 CARSP49589 748 aaKnown RBP17.38■□□□□ 0.37
RTN3-205ENST00000356000 ALDH5A1P51649 535 aaPredicted RBP17.38■□□□□ 0.37
RTN3-205ENST00000356000 RASA3Q14644 834 aa17.38■□□□□ 0.37
RTN3-205ENST00000356000 CMPK2Q5EBM0 449 aa17.38■□□□□ 0.37
RTN3-205ENST00000356000 SYCP3Q8IZU3 236 aa17.38■□□□□ 0.37
RTN3-205ENST00000356000 NGDNQ8NEJ9 315 aaKnown RBP17.38■□□□□ 0.37
RTN3-205ENST00000356000 MAIP1Q8WWC4 291 aa17.38■□□□□ 0.37
RTN3-205ENST00000356000 MAP3K14Q99558 947 aa17.38■□□□□ 0.37
RTN3-205ENST00000356000 BIN2Q9UBW5 565 aaPredicted RBP17.38■□□□□ 0.37
RTN3-205ENST00000356000 NFU1Q9UMS0 254 aa17.38■□□□□ 0.37
RTN3-205ENST00000356000 EIF4E1BA6NMX2 242 aaKnown RBP17.37■□□□□ 0.37
RTN3-205ENST00000356000 C8orf74Q6P047 294 aa17.37■□□□□ 0.37
RTN3-205ENST00000356000 LMNTD2Q8IXW0 634 aa17.37■□□□□ 0.37
RTN3-205ENST00000356000 SPATA20Q8TB22 786 aa17.37■□□□□ 0.37
RTN3-205ENST00000356000 TSPAN18Q96SJ8 248 aa17.37■□□□□ 0.37
RTN3-205ENST00000356000 PLAAQ9Y263 795 aa17.37■□□□□ 0.37
RTN3-205ENST00000356000 ZNF510Q9Y2H8 683 aa17.37■□□□□ 0.37
RTN3-205ENST00000356000 LMO7Q8WWI1 1683 aa17.37■□□□□ 0.37
RTN3-205ENST00000356000 ITIH4Q14624 930 aa17.37■□□□□ 0.37
RTN3-205ENST00000356000 CCDC129Q6ZRS4 1044 aa17.37■□□□□ 0.37
RTN3-205ENST00000356000 ANKS4BQ8N8V4 417 aa17.37■□□□□ 0.37
RTN3-205ENST00000356000 ARHGEF10LQ9HCE6 1279 aa17.37■□□□□ 0.37
RTN3-205ENST00000356000 UTP3Q9NQZ2 479 aaKnown RBP eCLIP17.37■□□□□ 0.371e-6■■■■■ 88.9
RTN3-205ENST00000356000 GJB4Q9NTQ9 266 aa17.37■□□□□ 0.37
RTN3-205ENST00000356000 PRR36Q9H6K5 1346 aa17.37■□□□□ 0.37
RTN3-205ENST00000356000 SYNRGQ9UMZ2 1314 aa17.37■□□□□ 0.37
RTN3-205ENST00000356000 RREB1Q92766 1687 aa17.37■□□□□ 0.37
RTN3-205ENST00000356000 MATR3P43243 847 aaKnown RBP eCLIP17.36■□□□□ 0.371e-6■■□□□ 13.3
RTN3-205ENST00000356000 PSMC4P43686 418 aa17.36■□□□□ 0.37
RTN3-205ENST00000356000 PPP2R2AP63151 447 aa17.36■□□□□ 0.37
RTN3-205ENST00000356000 BIRC3Q13489 604 aa17.36■□□□□ 0.37
RTN3-205ENST00000356000 CUL4BQ13620 913 aa17.36■□□□□ 0.37
RTN3-205ENST00000356000 TTC39AQ5SRH9 613 aa17.36■□□□□ 0.37
RTN3-205ENST00000356000 APBB1IPQ7Z5R6 666 aaPredicted RBP17.36■□□□□ 0.37
RTN3-205ENST00000356000 NECTIN2Q92692 538 aa17.36■□□□□ 0.37
RTN3-205ENST00000356000 EAF2Q96CJ1 260 aaPredicted RBP17.36■□□□□ 0.37
RTN3-205ENST00000356000 LACRTQ9GZZ8 138 aa17.36■□□□□ 0.37
RTN3-205ENST00000356000 PLCB1Q9NQ66 1216 aa17.36■□□□□ 0.37
RTN3-205ENST00000356000 PARP4Q9UKK3 1724 aaKnown RBP17.36■□□□□ 0.37
RTN3-205ENST00000356000 GCOM1H8Y6P7 765 aaPredicted RBP17.36■□□□□ 0.37
RTN3-205ENST00000356000 MYZAPP0CAP1 466 aa17.36■□□□□ 0.37
RTN3-205ENST00000356000 KCNJ2P63252 427 aa17.36■□□□□ 0.37
RTN3-205ENST00000356000 FAM196AQ6ZSG2 479 aa17.36■□□□□ 0.37
RTN3-205ENST00000356000 WHAMMQ8TF30 809 aa17.36■□□□□ 0.37
RTN3-205ENST00000356000 NOC3LQ8WTT2 800 aaKnown RBP17.36■□□□□ 0.37
RTN3-205ENST00000356000 PRCCQ92733 491 aaPredicted RBP17.36■□□□□ 0.37
RTN3-205ENST00000356000 GOLGA6L10A0A0M3HER8 536 aa17.35■□□□□ 0.37
RTN3-205ENST00000356000 LRRC10BA6NIK2 292 aa17.35■□□□□ 0.37
RTN3-205ENST00000356000 PENKP01210 267 aaPredicted RBP17.35■□□□□ 0.37
RTN3-205ENST00000356000 RRS1Q15050 365 aaKnown RBP17.35■□□□□ 0.37
RTN3-205ENST00000356000 CACNA2D4Q7Z3S7 1137 aa17.35■□□□□ 0.37
RTN3-205ENST00000356000 CNOT8Q9UFF9 292 aaKnown RBP17.35■□□□□ 0.37
RTN3-205ENST00000356000 SWAP70Q9UH65 585 aa17.35■□□□□ 0.37
RTN3-205ENST00000356000 AGAP1Q9UPQ3 857 aa17.35■□□□□ 0.37
RTN3-205ENST00000356000 RCCD1A6NED2 376 aa17.35■□□□□ 0.37
RTN3-205ENST00000356000 HSPA9P38646 679 aaKnown RBP17.35■□□□□ 0.37
RTN3-205ENST00000356000 DEUP1Q05D60 604 aa17.35■□□□□ 0.37
RTN3-205ENST00000356000 KIFAP3Q92845 792 aa17.35■□□□□ 0.37
RTN3-205ENST00000356000 IFT43Q96FT9 208 aa17.35■□□□□ 0.37
RTN3-205ENST00000356000 CHMP6Q96FZ7 201 aa17.35■□□□□ 0.37
RTN3-205ENST00000356000 TRAPPC9Q96Q05 1148 aa17.35■□□□□ 0.37
RTN3-205ENST00000356000 CDK19Q9BWU1 502 aa17.35■□□□□ 0.37
RTN3-205ENST00000356000 BTG4Q9NY30 223 aa17.35■□□□□ 0.37
RTN3-205ENST00000356000 LIMA1Q9UHB6 759 aaKnown RBP17.35■□□□□ 0.37
RTN3-205ENST00000356000 GLI1P08151 1106 aa17.34■□□□□ 0.37
RTN3-205ENST00000356000 POLE2P56282 527 aa17.34■□□□□ 0.37
RTN3-205ENST00000356000 NUDT16Q96DE0 195 aaKnown RBP17.34■□□□□ 0.37
RTN3-205ENST00000356000 CCDC8Q9H0W5 538 aaPredicted RBP17.34■□□□□ 0.37
RTN3-205ENST00000356000 SDAD1Q9NVU7 687 aaKnown RBP eCLIP17.34■□□□□ 0.37
RTN3-205ENST00000356000 ATXN10Q9UBB4 475 aa17.34■□□□□ 0.37
RTN3-205ENST00000356000 SERTAD1Q9UHV2 236 aa17.34■□□□□ 0.37
RTN3-205ENST00000356000 CCDC61Q9Y6R9 512 aa17.34■□□□□ 0.37
RTN3-205ENST00000356000 SPATA31A1Q5TZJ5 1347 aa17.34■□□□□ 0.37
RTN3-205ENST00000356000 SP100P23497 879 aaPredicted RBP17.34■□□□□ 0.37
RTN3-205ENST00000356000 CCT6AP40227 531 aaKnown RBP17.34■□□□□ 0.37
RTN3-205ENST00000356000 TRIM68Q6AZZ1 485 aa17.34■□□□□ 0.37
RTN3-205ENST00000356000 FBXL16Q8N461 479 aa17.34■□□□□ 0.37
RTN3-205ENST00000356000 DNAJC7Q99615 494 aa17.34■□□□□ 0.37
RTN3-205ENST00000356000 CWC25Q9NXE8 425 aaPredicted RBP17.34■□□□□ 0.37
RTN3-205ENST00000356000 ADAM22Q9P0K1 906 aa17.34■□□□□ 0.37
RTN3-205ENST00000356000 CD44P16070 742 aaKnown RBP17.34■□□□□ 0.37
RTN3-205ENST00000356000 GUCY2FP51841 1108 aa17.34■□□□□ 0.37
RTN3-205ENST00000356000 INHBCP55103 352 aa17.34■□□□□ 0.37
RTN3-205ENST00000356000 STX17P56962 302 aa17.34■□□□□ 0.37
RTN3-205ENST00000356000 KRT31Q15323 416 aa17.34■□□□□ 0.37
RTN3-205ENST00000356000 ZRSR2Q15696 482 aaKnown RBP17.34■□□□□ 0.37
RTN3-205ENST00000356000 CC2D2BQ6DHV5 1058 aa17.34■□□□□ 0.37
RTN3-205ENST00000356000 ARHGEF1Q92888 912 aaKnown RBP17.34■□□□□ 0.37
RTN3-205ENST00000356000 OPTNQ96CV9 577 aa17.34■□□□□ 0.37
RTN3-205ENST00000356000 PHACTR1Q9C0D0 580 aa17.34■□□□□ 0.37
RTN3-205ENST00000356000 PRDM11Q9NQV5 511 aa17.34■□□□□ 0.37
RTN3-205ENST00000356000 AATFQ9NY61 560 aaKnown RBP eCLIP17.34■□□□□ 0.37
RTN3-205ENST00000356000 PA2G4Q9UQ80 394 aaKnown RBP17.34■□□□□ 0.37
RTN3-205ENST00000356000 H0YGN5 161 aa17.33■□□□□ 0.36
RTN3-205ENST00000356000 SH2B2O14492 632 aaPredicted RBP17.33■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 53.3 ms