RNA–Protein interactions for RNA: ENST00000351487.5

UPF3A-201, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

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Gene UPF3A, Length 2,235 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-201ENST00000351487 TUBGCP2Q9BSJ2 902 aa24.78■■□□□ 1.56
UPF3A-201ENST00000351487 SWAP70Q9UH65 585 aa24.78■■□□□ 1.56
UPF3A-201ENST00000351487 ATP6V0A2Q9Y487 856 aa24.78■■□□□ 1.56
UPF3A-201ENST00000351487 MYH4Q9Y623 1939 aa24.77■■□□□ 1.56
UPF3A-201ENST00000351487 NDUFA10O95299 355 aa24.77■■□□□ 1.56
UPF3A-201ENST00000351487 CALCRLQ16602 461 aa24.77■■□□□ 1.56
UPF3A-201ENST00000351487 AEBP2Q6ZN18 517 aaPredicted RBP24.77■■□□□ 1.56
UPF3A-201ENST00000351487 SLC35F6Q8N357 371 aa24.77■■□□□ 1.56
UPF3A-201ENST00000351487 CEP112Q8N8E3 955 aa24.77■■□□□ 1.56
UPF3A-201ENST00000351487 CHP1Q99653 195 aa24.77■■□□□ 1.56
UPF3A-201ENST00000351487 TTYH3Q9C0H2 523 aa24.77■■□□□ 1.56
UPF3A-201ENST00000351487 DDX4Q9NQI0 724 aaKnown RBP24.77■■□□□ 1.56
UPF3A-201ENST00000351487 EPN1Q9Y6I3 576 aaPredicted RBP24.77■■□□□ 1.56
UPF3A-201ENST00000351487 TTLL1O95922 423 aa24.77■■□□□ 1.56
UPF3A-201ENST00000351487 GRB10Q13322 594 aa24.77■■□□□ 1.56
UPF3A-201ENST00000351487 DPP8Q6V1X1 898 aaPredicted RBP24.77■■□□□ 1.56
UPF3A-201ENST00000351487 RETREG2Q8NC44 543 aa24.77■■□□□ 1.56
UPF3A-201ENST00000351487 SLF1Q9BQI6 1058 aa24.77■■□□□ 1.56
UPF3A-201ENST00000351487 NRXN2Q9P2S2 1712 aa24.76■■□□□ 1.55
UPF3A-201ENST00000351487 EDIL3O43854 480 aa24.76■■□□□ 1.55
UPF3A-201ENST00000351487 CHMP4BP1P59074 171 aa24.76■■□□□ 1.55
UPF3A-201ENST00000351487 ZNF543Q08ER8 600 aa24.76■■□□□ 1.55
UPF3A-201ENST00000351487 MEA1Q16626 185 aa24.76■■□□□ 1.55
UPF3A-201ENST00000351487 MEX3CQ5U5Q3 659 aaKnown RBP24.76■■□□□ 1.55
UPF3A-201ENST00000351487 ANKRD40Q6AI12 368 aa24.76■■□□□ 1.55
UPF3A-201ENST00000351487 CERS5Q8N5B7 392 aa24.76■■□□□ 1.55
UPF3A-201ENST00000351487 BLOC1S4Q9NUP1 217 aa24.76■■□□□ 1.55
UPF3A-201ENST00000351487 SERPINB13Q9UIV8 391 aa24.76■■□□□ 1.55
UPF3A-201ENST00000351487 REXO2Q9Y3B8 237 aaKnown RBP24.76■■□□□ 1.55
UPF3A-201ENST00000351487 B4DLN1 442 aa24.76■■□□□ 1.55
UPF3A-201ENST00000351487 TXKP42681 527 aa24.76■■□□□ 1.55
UPF3A-201ENST00000351487 KIAA0895Q8NCT3 520 aa24.76■■□□□ 1.55
UPF3A-201ENST00000351487 COA7Q96BR5 231 aa24.76■■□□□ 1.55
UPF3A-201ENST00000351487 CNOT6LQ96LI5 555 aaKnown RBP24.76■■□□□ 1.55
UPF3A-201ENST00000351487 NAPGQ99747 312 aaPredicted RBP24.76■■□□□ 1.55
UPF3A-201ENST00000351487 NUP58Q9BVL2 599 aa24.76■■□□□ 1.55
UPF3A-201ENST00000351487 EPC1Q9H2F5 836 aa24.76■■□□□ 1.55
UPF3A-201ENST00000351487 ADAMTSL1Q8N6G6 1762 aa24.75■■□□□ 1.55
UPF3A-201ENST00000351487 ABL1P00519 1130 aa24.75■■□□□ 1.55
UPF3A-201ENST00000351487 FCER1AP12319 257 aa24.75■■□□□ 1.55
UPF3A-201ENST00000351487 TMEM266Q2M3C6 531 aa24.75■■□□□ 1.55
UPF3A-201ENST00000351487 KIF4BQ2VIQ3 1234 aa24.75■■□□□ 1.55
UPF3A-201ENST00000351487 CC2D1AQ6P1N0 951 aaPredicted RBP24.75■■□□□ 1.55
UPF3A-201ENST00000351487 ZSCAN29Q8IWY8 852 aaPredicted RBP24.75■■□□□ 1.55
UPF3A-201ENST00000351487 LRWD1Q9UFC0 647 aa24.75■■□□□ 1.55
UPF3A-201ENST00000351487 TRPC5Q9UL62 973 aaPredicted RBP24.75■■□□□ 1.55
UPF3A-201ENST00000351487 PNMA6FA0A0J9YX94 578 aa24.74■■□□□ 1.55
UPF3A-201ENST00000351487 SLC37A4O43826 429 aa24.74■■□□□ 1.55
UPF3A-201ENST00000351487 TUBB4BP68371 445 aa24.74■■□□□ 1.55
UPF3A-201ENST00000351487 PDIA5Q14554 519 aa24.74■■□□□ 1.55
UPF3A-201ENST00000351487 WDR59Q6PJI9 974 aa24.74■■□□□ 1.55
UPF3A-201ENST00000351487 SV2BQ7L1I2 683 aa24.74■■□□□ 1.55
UPF3A-201ENST00000351487 PNMA5Q96PV4 448 aa24.74■■□□□ 1.55
UPF3A-201ENST00000351487 PARD6BQ9BYG5 372 aa24.74■■□□□ 1.55
UPF3A-201ENST00000351487 RAB34Q9BZG1 259 aa24.74■■□□□ 1.55
UPF3A-201ENST00000351487 RIC8AQ9NPQ8 531 aa24.74■■□□□ 1.55
UPF3A-201ENST00000351487 PVALEFA0A1B0GWK0 134 aa24.74■■□□□ 1.55
UPF3A-201ENST00000351487 PES1O00541 588 aaKnown RBP24.74■■□□□ 1.55
UPF3A-201ENST00000351487 TDP2O95551 362 aa24.74■■□□□ 1.55
UPF3A-201ENST00000351487 JMJD4Q9H9V9 463 aa24.74■■□□□ 1.55
UPF3A-201ENST00000351487 MYH7BA7E2Y1 1941 aa24.73■■□□□ 1.55
UPF3A-201ENST00000351487 RIMBP2O15034 1052 aa24.73■■□□□ 1.55
UPF3A-201ENST00000351487 HOXA7P31268 230 aaPredicted RBP24.73■■□□□ 1.55
UPF3A-201ENST00000351487 CENPPQ6IPU0 288 aa24.73■■□□□ 1.55
UPF3A-201ENST00000351487 ZNF662Q6ZS27 426 aa24.73■■□□□ 1.55
UPF3A-201ENST00000351487 UNC13DQ70J99 1090 aa24.73■■□□□ 1.55
UPF3A-201ENST00000351487 SHMT1P34896 483 aa24.73■■□□□ 1.55
UPF3A-201ENST00000351487 PLA2G4AP47712 749 aa24.73■■□□□ 1.55
UPF3A-201ENST00000351487 CLK2P49760 499 aaKnown RBP24.73■■□□□ 1.55
UPF3A-201ENST00000351487 TSR1Q2NL82 804 aaKnown RBP24.73■■□□□ 1.55
UPF3A-201ENST00000351487 FIGNQ5HY92 759 aa24.73■■□□□ 1.55
UPF3A-201ENST00000351487 MIIPQ5JXC2 388 aa24.73■■□□□ 1.55
UPF3A-201ENST00000351487 PPP4R3AQ6IN85 833 aa24.73■■□□□ 1.55
UPF3A-201ENST00000351487 CLEC10AQ8IUN9 316 aa24.73■■□□□ 1.55
UPF3A-201ENST00000351487 LARP4BQ92615 738 aaKnown RBP24.73■■□□□ 1.55
UPF3A-201ENST00000351487 HAUS4Q9H6D7 363 aa24.73■■□□□ 1.55
UPF3A-201ENST00000351487 TERF2Q15554 542 aa24.72■■□□□ 1.55
UPF3A-201ENST00000351487 ERGIC2Q96RQ1 377 aa24.72■■□□□ 1.55
UPF3A-201ENST00000351487 GPCPD1Q9NPB8 672 aa24.72■■□□□ 1.55
UPF3A-201ENST00000351487 RASSF10A6NK89 507 aa24.71■■□□□ 1.55
UPF3A-201ENST00000351487 SEC31AO94979 1220 aaKnown RBP24.71■■□□□ 1.55
UPF3A-201ENST00000351487 EIF6P56537 245 aaKnown RBP24.71■■□□□ 1.55
UPF3A-201ENST00000351487 TBC1D8BQ0IIM8 1120 aa24.71■■□□□ 1.55
UPF3A-201ENST00000351487 WHAMMP3Q1A5X7 153 aa24.71■■□□□ 1.55
UPF3A-201ENST00000351487 GPATCH4Q5T3I0 446 aaKnown RBP24.71■■□□□ 1.55
UPF3A-201ENST00000351487 ADGRF4Q8IZF3 695 aa24.71■■□□□ 1.55
UPF3A-201ENST00000351487 ZC3H12CQ9C0D7 883 aaKnown RBP24.71■■□□□ 1.55
UPF3A-201ENST00000351487 CCDC151A5D8V7 595 aa24.71■■□□□ 1.55
UPF3A-201ENST00000351487 MYMKA6NI61 221 aa24.71■■□□□ 1.55
UPF3A-201ENST00000351487 F8W031 263 aaPredicted RBP24.71■■□□□ 1.55
UPF3A-201ENST00000351487 PPP1R11O60927 126 aaPredicted RBP24.71■■□□□ 1.55
UPF3A-201ENST00000351487 TBC1D8O95759 1140 aa24.71■■□□□ 1.55
UPF3A-201ENST00000351487 HHIPL2Q6UWX4 724 aa24.71■■□□□ 1.55
UPF3A-201ENST00000351487 MTMR8Q96EF0 704 aa24.71■■□□□ 1.55
UPF3A-201ENST00000351487 SEMA6BQ9H3T3 888 aa24.71■■□□□ 1.55
UPF3A-201ENST00000351487 USP40Q9NVE5 1235 aa24.71■■□□□ 1.55
UPF3A-201ENST00000351487 ARFGEF1Q9Y6D6 1849 aa24.7■■□□□ 1.55
UPF3A-201ENST00000351487 KIF20AO95235 890 aa24.7■■□□□ 1.55
UPF3A-201ENST00000351487 TRIM21P19474 475 aaKnown RBP24.7■■□□□ 1.55
UPF3A-201ENST00000351487 MTIF2P46199 727 aaKnown RBP24.7■■□□□ 1.55
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms