RNA–Protein interactions for RNA: ENST00000334389.5

LINC00643-201, long intergenic non-protein coding RNA 643, humanhuman

TSL 2 BASIC

Gene LINC00643, Length 3,247 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-201ENST00000334389 PSMC4P43686 418 aa2.06□□□□□ -2.08
LINC00643-201ENST00000334389 CRKP46108 304 aa2.06□□□□□ -2.08
LINC00643-201ENST00000334389 ADGRE1Q14246 886 aa2.06□□□□□ -2.08
LINC00643-201ENST00000334389 SHHQ15465 462 aa2.06□□□□□ -2.08
LINC00643-201ENST00000334389 IQSEC1Q6DN90 963 aa2.06□□□□□ -2.08
LINC00643-201ENST00000334389 XRRA1Q6P2D8 792 aa2.06□□□□□ -2.08
LINC00643-201ENST00000334389 KCNV1Q6PIU1 500 aa2.06□□□□□ -2.08
LINC00643-201ENST00000334389 RNF168Q8IYW5 571 aaPredicted RBP2.06□□□□□ -2.08
LINC00643-201ENST00000334389 CHST13Q8NET6 341 aa2.06□□□□□ -2.08
LINC00643-201ENST00000334389 ADAM32Q8TC27 787 aa2.06□□□□□ -2.08
LINC00643-201ENST00000334389 DIS3LQ8TF46 1054 aaKnown RBP2.06□□□□□ -2.08
LINC00643-201ENST00000334389 PPP2R3CQ969Q6 453 aa2.06□□□□□ -2.08
LINC00643-201ENST00000334389 CLSTN3Q9BQT9 956 aa2.06□□□□□ -2.08
LINC00643-201ENST00000334389 BCL2L13Q9BXK5 485 aa2.06□□□□□ -2.08
LINC00643-201ENST00000334389 ZDHHC5Q9C0B5 715 aa2.06□□□□□ -2.08
LINC00643-201ENST00000334389 EPB41L4AQ9HCS5 686 aaPredicted RBP2.06□□□□□ -2.08
LINC00643-201ENST00000334389 KDM4EB2RXH2 506 aaPredicted RBP2.05□□□□□ -2.08
LINC00643-201ENST00000334389 SUPT5HO00267 1087 aaKnown RBP2.05□□□□□ -2.08
LINC00643-201ENST00000334389 ALDH1L1O75891 902 aa2.05□□□□□ -2.08
LINC00643-201ENST00000334389 ITGB2P05107 769 aa2.05□□□□□ -2.08
LINC00643-201ENST00000334389 ZNF806P0C7X5 589 aa2.05□□□□□ -2.08
LINC00643-201ENST00000334389 AKR1A1P14550 325 aa2.05□□□□□ -2.08
LINC00643-201ENST00000334389 LIG1P18858 919 aa2.05□□□□□ -2.08
LINC00643-201ENST00000334389 TXKP42681 527 aa2.05□□□□□ -2.08
LINC00643-201ENST00000334389 CSRP3P50461 194 aa2.05□□□□□ -2.08
LINC00643-201ENST00000334389 SEMA3BQ13214 749 aa2.05□□□□□ -2.08
LINC00643-201ENST00000334389 PPP2R5DQ14738 602 aa2.05□□□□□ -2.08
LINC00643-201ENST00000334389 AOC3Q16853 763 aa2.05□□□□□ -2.08
LINC00643-201ENST00000334389 SLC4A8Q2Y0W8 1093 aa2.05□□□□□ -2.08
LINC00643-201ENST00000334389 TSGA10IPQ3SY00 556 aa2.05□□□□□ -2.08
LINC00643-201ENST00000334389 SUSD4Q5VX71 490 aa2.05□□□□□ -2.08
LINC00643-201ENST00000334389 RNF180Q86T96 592 aa2.05□□□□□ -2.08
LINC00643-201ENST00000334389 C3orf20Q8ND61 904 aa2.05□□□□□ -2.08
LINC00643-201ENST00000334389 PTCD2Q8WV60 388 aaKnown RBP2.05□□□□□ -2.08
LINC00643-201ENST00000334389 SHDQ96IW2 340 aa2.05□□□□□ -2.08
LINC00643-201ENST00000334389 KIF2CQ99661 725 aa2.05□□□□□ -2.08
LINC00643-201ENST00000334389 LSM14BQ9BX40 385 aaKnown RBP2.05□□□□□ -2.08
LINC00643-201ENST00000334389 CARD14Q9BXL6 1004 aa2.05□□□□□ -2.08
LINC00643-201ENST00000334389 STK26Q9P289 416 aa2.05□□□□□ -2.08
LINC00643-201ENST00000334389 TSR3Q9UJK0 312 aaKnown RBP2.05□□□□□ -2.08
LINC00643-201ENST00000334389 PCDHGA1Q9Y5H4 931 aa2.05□□□□□ -2.08
LINC00643-201ENST00000334389 WIPF3A6NGB9 483 aa2.05□□□□□ -2.08
LINC00643-201ENST00000334389 YKT6O15498 198 aa2.05□□□□□ -2.08
LINC00643-201ENST00000334389 CT47B1P0C2W7 299 aaPredicted RBP2.05□□□□□ -2.08
LINC00643-201ENST00000334389 NPR3P17342 541 aa2.05□□□□□ -2.08
LINC00643-201ENST00000334389 PTPRAP18433 802 aa2.05□□□□□ -2.08
LINC00643-201ENST00000334389 RPL17P18621 184 aaKnown RBP2.05□□□□□ -2.08
LINC00643-201ENST00000334389 INHBCP55103 352 aa2.05□□□□□ -2.08
LINC00643-201ENST00000334389 RPS8P62241 208 aaKnown RBP2.05□□□□□ -2.08
LINC00643-201ENST00000334389 PRKCZQ05513 592 aa2.05□□□□□ -2.08
LINC00643-201ENST00000334389 BFSP2Q13515 415 aa2.05□□□□□ -2.08
LINC00643-201ENST00000334389 GRIN2CQ14957 1233 aa2.05□□□□□ -2.08
LINC00643-201ENST00000334389 LRRC41Q15345 812 aa2.05□□□□□ -2.08
LINC00643-201ENST00000334389 TPRNQ4KMQ1 711 aa2.05□□□□□ -2.08
LINC00643-201ENST00000334389 SOWAHCQ53LP3 525 aaPredicted RBP2.05□□□□□ -2.08
LINC00643-201ENST00000334389 GIMAP6Q6P9H5 292 aa2.05□□□□□ -2.08
LINC00643-201ENST00000334389 ELMSAN1Q6PJG2 1045 aa2.05□□□□□ -2.08
LINC00643-201ENST00000334389 PPARGC1BQ86YN6 1023 aaKnown RBP2.05□□□□□ -2.08
LINC00643-201ENST00000334389 FOXP4Q8IVH2 680 aaPredicted RBP2.05□□□□□ -2.08
LINC00643-201ENST00000334389 TTC5Q8N0Z6 440 aa2.05□□□□□ -2.08
LINC00643-201ENST00000334389 LEMD2Q8NC56 503 aa2.05□□□□□ -2.08
LINC00643-201ENST00000334389 GPRC5AQ8NFJ5 357 aa2.05□□□□□ -2.08
LINC00643-201ENST00000334389 WDR66Q8TBY9 1149 aa2.05□□□□□ -2.08
LINC00643-201ENST00000334389 MYLIPQ8WY64 445 aa2.05□□□□□ -2.08
LINC00643-201ENST00000334389 CASP10Q92851 521 aa2.05□□□□□ -2.08
LINC00643-201ENST00000334389 ZBED2Q9BTP6 218 aa2.05□□□□□ -2.08
LINC00643-201ENST00000334389 FZD8Q9H461 694 aa2.05□□□□□ -2.08
LINC00643-201ENST00000334389 HDAC5Q9UQL6 1122 aa2.05□□□□□ -2.08
LINC00643-201ENST00000334389 GNEQ9Y223 722 aaKnown RBP2.05□□□□□ -2.08
LINC00643-201ENST00000334389 CLRN2A0PK11 232 aa2.04□□□□□ -2.08
LINC00643-201ENST00000334389 H3BM21 787 aa2.04□□□□□ -2.08
LINC00643-201ENST00000334389 SIX3O95343 332 aaPredicted RBP2.04□□□□□ -2.08
LINC00643-201ENST00000334389 MCM2P49736 904 aa2.04□□□□□ -2.08
LINC00643-201ENST00000334389 CACNB2Q08289 660 aaPredicted RBP2.04□□□□□ -2.08
LINC00643-201ENST00000334389 C19orf57Q0VDD7 668 aa2.04□□□□□ -2.08
LINC00643-201ENST00000334389 GRB10Q13322 594 aa2.04□□□□□ -2.08
LINC00643-201ENST00000334389 RTP5Q14D33 572 aa2.04□□□□□ -2.08
LINC00643-201ENST00000334389 MPRIPQ6WCQ1 1025 aa2.04□□□□□ -2.08
LINC00643-201ENST00000334389 CATSPERGQ6ZRH7 1159 aa2.04□□□□□ -2.08
LINC00643-201ENST00000334389 C16orf59Q7L2K0 433 aa2.04□□□□□ -2.08
LINC00643-201ENST00000334389 OGFOD1Q8N543 542 aa2.04□□□□□ -2.08
LINC00643-201ENST00000334389 DCAF11Q8TEB1 546 aa2.04□□□□□ -2.08
LINC00643-201ENST00000334389 TRIB2Q92519 343 aa2.04□□□□□ -2.08
LINC00643-201ENST00000334389 RNPC3Q96LT9 517 aaKnown RBP2.04□□□□□ -2.08
LINC00643-201ENST00000334389 C1orf112Q9NSG2 853 aa2.04□□□□□ -2.08
LINC00643-201ENST00000334389 PRKAG2Q9UGJ0 569 aa2.04□□□□□ -2.08
LINC00643-201ENST00000334389 EBF1Q9UH73 591 aa2.04□□□□□ -2.08
LINC00643-201ENST00000334389 EMILIN1Q9Y6C2 1016 aa2.04□□□□□ -2.08
LINC00643-201ENST00000334389 GPR75-ASB3A0A0A6YYF3 556 aa2.04□□□□□ -2.08
LINC00643-201ENST00000334389 A0A1W2PQ45 241 aaPredicted RBP2.04□□□□□ -2.08
LINC00643-201ENST00000334389 A0A1W2PQY0 241 aa2.04□□□□□ -2.08
LINC00643-201ENST00000334389 SPDYE3A6NKU9 549 aa2.04□□□□□ -2.08
LINC00643-201ENST00000334389 USP17L15C9J2P7 530 aa2.04□□□□□ -2.08
LINC00643-201ENST00000334389 USP17L13C9JLJ4 530 aa2.04□□□□□ -2.08
LINC00643-201ENST00000334389 USP17L11C9JVI0 530 aa2.04□□□□□ -2.08
LINC00643-201ENST00000334389 USP17L18D6R9N7 530 aa2.04□□□□□ -2.08
LINC00643-201ENST00000334389 USP17L22D6RA61 530 aa2.04□□□□□ -2.08
LINC00643-201ENST00000334389 USP17L17D6RBQ6 530 aa2.04□□□□□ -2.08
LINC00643-201ENST00000334389 USP17L19D6RCP7 530 aa2.04□□□□□ -2.08
LINC00643-201ENST00000334389 USP17L20D6RJB6 530 aa2.04□□□□□ -2.08
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms