RNA–Protein interactions for RNA: ENST00000332797.10

CCDC28A-201, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,496 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-201ENST00000332797 SOX10P56693 466 aa18.36■□□□□ 0.53
CCDC28A-201ENST00000332797 HEATR3Q7Z4Q2 680 aa18.36■□□□□ 0.53
CCDC28A-201ENST00000332797 ZNF467Q7Z7K2 595 aaPredicted RBP18.36■□□□□ 0.53
CCDC28A-201ENST00000332797 TBC1D32Q96NH3 1257 aa18.36■□□□□ 0.53
CCDC28A-201ENST00000332797 XRN2Q9H0D6 950 aaKnown RBP eCLIP18.36■□□□□ 0.53
CCDC28A-201ENST00000332797 HMX1Q9NP08 348 aaPredicted RBP18.36■□□□□ 0.53
CCDC28A-201ENST00000332797 V9GY48 417 aaPredicted RBP18.36■□□□□ 0.53
CCDC28A-201ENST00000332797 RPTORQ8N122 1335 aa18.36■□□□□ 0.53
CCDC28A-201ENST00000332797 PPFIA3O75145 1194 aa18.35■□□□□ 0.53
CCDC28A-201ENST00000332797 CCND3P30281 292 aaPredicted RBP18.35■□□□□ 0.53
CCDC28A-201ENST00000332797 MSL3Q8N5Y2 521 aaKnown RBP18.35■□□□□ 0.53
CCDC28A-201ENST00000332797 GPKOWQ92917 476 aaPredicted RBP eCLIP18.35■□□□□ 0.53
CCDC28A-201ENST00000332797 PHKBQ93100 1093 aa18.35■□□□□ 0.53
CCDC28A-201ENST00000332797 ASTN1O14525 1302 aa18.35■□□□□ 0.53
CCDC28A-201ENST00000332797 SYNGAP1Q96PV0 1343 aa18.35■□□□□ 0.53
CCDC28A-201ENST00000332797 CPLX1O14810 134 aa18.34■□□□□ 0.53
CCDC28A-201ENST00000332797 NTRK3Q16288 839 aa18.34■□□□□ 0.53
CCDC28A-201ENST00000332797 PRAMEF19Q5SWL8 479 aa18.34■□□□□ 0.53
CCDC28A-201ENST00000332797 MAMDC4Q6UXC1 1216 aa18.34■□□□□ 0.53
CCDC28A-201ENST00000332797 ARMCX2Q7L311 632 aa18.34■□□□□ 0.53
CCDC28A-201ENST00000332797 SLKQ9H2G2 1235 aaPredicted RBP18.34■□□□□ 0.53
CCDC28A-201ENST00000332797 ADD3Q9UEY8 706 aaKnown RBP18.34■□□□□ 0.53
CCDC28A-201ENST00000332797 PFKFB2O60825 505 aa18.33■□□□□ 0.53
CCDC28A-201ENST00000332797 CYBAP13498 195 aa18.33■□□□□ 0.53
CCDC28A-201ENST00000332797 IFNAR1P17181 557 aa18.33■□□□□ 0.53
CCDC28A-201ENST00000332797 CNGA1P29973 690 aa18.33■□□□□ 0.53
CCDC28A-201ENST00000332797 HOXA13P31271 388 aaPredicted RBP18.33■□□□□ 0.53
CCDC28A-201ENST00000332797 ALDH5A1P51649 535 aaPredicted RBP18.33■□□□□ 0.53
CCDC28A-201ENST00000332797 AKAP17AQ02040 695 aaKnown RBP18.33■□□□□ 0.53
CCDC28A-201ENST00000332797 SCRN1Q12765 414 aa18.33■□□□□ 0.53
CCDC28A-201ENST00000332797 RABEP1Q15276 862 aa18.33■□□□□ 0.53
CCDC28A-201ENST00000332797 WWC2Q6AWC2 1192 aa18.33■□□□□ 0.53
CCDC28A-201ENST00000332797 TRPV1Q8NER1 839 aa18.33■□□□□ 0.53
CCDC28A-201ENST00000332797 SYTL5Q8TDW5 730 aaPredicted RBP18.33■□□□□ 0.53
CCDC28A-201ENST00000332797 SLC26A6Q9BXS9 759 aa18.33■□□□□ 0.53
CCDC28A-201ENST00000332797 MAF1Q9H063 256 aa18.33■□□□□ 0.53
CCDC28A-201ENST00000332797 PAK6Q9NQU5 681 aaPredicted RBP18.33■□□□□ 0.53
CCDC28A-201ENST00000332797 CDKN2AIPQ9NXV6 580 aaPredicted RBP18.33■□□□□ 0.53
CCDC28A-201ENST00000332797 CNPY2Q9Y2B0 182 aa18.33■□□□□ 0.53
CCDC28A-201ENST00000332797 DDX49Q9Y6V7 483 aaKnown RBP18.33■□□□□ 0.53
CCDC28A-201ENST00000332797 ASB14A6NK59 587 aa18.33■□□□□ 0.52
CCDC28A-201ENST00000332797 GCOM1H8Y6P7 765 aaPredicted RBP18.33■□□□□ 0.52
CCDC28A-201ENST00000332797 LARGE1O95461 756 aa18.33■□□□□ 0.52
CCDC28A-201ENST00000332797 SNAI1O95863 264 aaPredicted RBP18.33■□□□□ 0.52
CCDC28A-201ENST00000332797 POLR2MP0CAP2 368 aa18.33■□□□□ 0.52
CCDC28A-201ENST00000332797 HSD17B4P51659 736 aa18.33■□□□□ 0.52
CCDC28A-201ENST00000332797 CPLX2Q6PUV4 134 aaKnown RBP18.33■□□□□ 0.52
CCDC28A-201ENST00000332797 DEFB118Q96PH6 123 aa18.33■□□□□ 0.52
CCDC28A-201ENST00000332797 COL20A1Q9P218 1284 aa18.33■□□□□ 0.52
CCDC28A-201ENST00000332797 POTEFA5A3E0 1075 aa18.32■□□□□ 0.52
CCDC28A-201ENST00000332797 PRPF3O43395 683 aaKnown RBP18.32■□□□□ 0.52
CCDC28A-201ENST00000332797 GJB1P08034 283 aa18.32■□□□□ 0.52
CCDC28A-201ENST00000332797 NAPAP54920 295 aa18.32■□□□□ 0.52
CCDC28A-201ENST00000332797 GHRHRQ02643 423 aa18.32■□□□□ 0.52
CCDC28A-201ENST00000332797 ME3Q16798 604 aa18.32■□□□□ 0.52
CCDC28A-201ENST00000332797 PFKFB3Q16875 520 aaPredicted RBP18.32■□□□□ 0.52
CCDC28A-201ENST00000332797 DNERQ8NFT8 737 aa18.32■□□□□ 0.52
CCDC28A-201ENST00000332797 TAAR1Q96RJ0 339 aa18.32■□□□□ 0.52
CCDC28A-201ENST00000332797 RNF26Q9BY78 433 aaPredicted RBP18.32■□□□□ 0.52
CCDC28A-201ENST00000332797 RBM27Q9P2N5 1060 aaKnown RBP18.32■□□□□ 0.52
CCDC28A-201ENST00000332797 NRBP1Q9UHY1 535 aa18.32■□□□□ 0.52
CCDC28A-201ENST00000332797 ZHX1Q9UKY1 873 aaPredicted RBP18.32■□□□□ 0.52
CCDC28A-201ENST00000332797 LRRC37A2A6NM11 1700 aa18.31■□□□□ 0.52
CCDC28A-201ENST00000332797 MCM3APO60318 1980 aa18.31■□□□□ 0.52
CCDC28A-201ENST00000332797 hCG_1984214I3L0E3 225 aa18.31■□□□□ 0.52
CCDC28A-201ENST00000332797 SCG2P13521 617 aa18.31■□□□□ 0.52
CCDC28A-201ENST00000332797 SSRP1Q08945 709 aaKnown RBP18.31■□□□□ 0.52
CCDC28A-201ENST00000332797 TRIM22Q8IYM9 498 aa18.31■□□□□ 0.52
CCDC28A-201ENST00000332797 SAMD3Q8N6K7 520 aa18.31■□□□□ 0.52
CCDC28A-201ENST00000332797 ZNF713Q8N859 430 aaPredicted RBP18.31■□□□□ 0.52
CCDC28A-201ENST00000332797 NECAB1Q8N987 351 aa18.31■□□□□ 0.52
CCDC28A-201ENST00000332797 CUL5Q93034 780 aa18.31■□□□□ 0.52
CCDC28A-201ENST00000332797 MAP3K20Q9NYL2 800 aaKnown RBP18.31■□□□□ 0.52
CCDC28A-201ENST00000332797 STXBP3O00186 592 aa18.3■□□□□ 0.52
CCDC28A-201ENST00000332797 PPP1R18Q6NYC8 613 aa18.3■□□□□ 0.52
CCDC28A-201ENST00000332797 FCHSD1Q86WN1 690 aa18.3■□□□□ 0.52
CCDC28A-201ENST00000332797 U2AF1L4Q8WU68 220 aaKnown RBP18.3■□□□□ 0.52
CCDC28A-201ENST00000332797 RMDN3Q96TC7 470 aa18.3■□□□□ 0.52
CCDC28A-201ENST00000332797 MPHOSPH6Q99547 160 aaKnown RBP18.3■□□□□ 0.52
CCDC28A-201ENST00000332797 ABHD16BQ9H3Z7 469 aa18.3■□□□□ 0.52
CCDC28A-201ENST00000332797 PSTPIP2Q9H939 334 aa18.3■□□□□ 0.52
CCDC28A-201ENST00000332797 BARHL2Q9NY43 387 aa18.3■□□□□ 0.52
CCDC28A-201ENST00000332797 LIMCH1Q9UPQ0 1083 aa18.3■□□□□ 0.52
CCDC28A-201ENST00000332797 LOC102724159A0A0B4J2E5 919 aa18.29■□□□□ 0.52
CCDC28A-201ENST00000332797 ST18O60284 1047 aa18.29■□□□□ 0.52
CCDC28A-201ENST00000332797 CDKL5O76039 1030 aa18.29■□□□□ 0.52
CCDC28A-201ENST00000332797 ZNF865P0CJ78 1059 aaPredicted RBP18.29■□□□□ 0.52
CCDC28A-201ENST00000332797 EIF2AK2P19525 551 aaKnown RBP18.29■□□□□ 0.52
CCDC28A-201ENST00000332797 EN2P19622 333 aaPredicted RBP18.29■□□□□ 0.52
CCDC28A-201ENST00000332797 PDE4DQ08499 809 aa18.29■□□□□ 0.52
CCDC28A-201ENST00000332797 ACVR2BQ13705 512 aa18.29■□□□□ 0.52
CCDC28A-201ENST00000332797 PWP2Q15269 919 aaKnown RBP18.29■□□□□ 0.52
CCDC28A-201ENST00000332797 PKN1Q16512 942 aa18.29■□□□□ 0.52
CCDC28A-201ENST00000332797 ARHGEF16Q5VV41 709 aa18.29■□□□□ 0.52
CCDC28A-201ENST00000332797 TYW1BQ6NUM6 668 aa18.29■□□□□ 0.52
CCDC28A-201ENST00000332797 USP17L6PQ6QN14 398 aa18.29■□□□□ 0.52
CCDC28A-201ENST00000332797 EEPD1Q7L9B9 569 aa18.29■□□□□ 0.52
CCDC28A-201ENST00000332797 SMARCC2Q8TAQ2 1214 aa18.29■□□□□ 0.52
CCDC28A-201ENST00000332797 NSUN6Q8TEA1 469 aaKnown RBP18.29■□□□□ 0.52
CCDC28A-201ENST00000332797 GTF3C6Q969F1 213 aa18.29■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms