RNA–Protein interactions for RNA: ENST00000328923.7

SHMT2-201, Transcript of serine hydroxymethyltransferase 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHMT2, Length 2,537 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-201ENST00000328923 TRAPPC3O43617 180 aa13.07□□□□□ -0.32
SHMT2-201ENST00000328923 PPP6R2O75170 966 aa13.07□□□□□ -0.32
SHMT2-201ENST00000328923 BPIFB4P59827 614 aa13.07□□□□□ -0.32
SHMT2-201ENST00000328923 CKAP4Q07065 602 aaKnown RBP13.07□□□□□ -0.32
SHMT2-201ENST00000328923 SLC39A14Q15043 492 aa13.07□□□□□ -0.32
SHMT2-201ENST00000328923 PPP4R3AQ6IN85 833 aa13.07□□□□□ -0.32
SHMT2-201ENST00000328923 SYNE3Q6ZMZ3 975 aa13.07□□□□□ -0.32
SHMT2-201ENST00000328923 PPFIBP1Q86W92 1011 aa13.07□□□□□ -0.32
SHMT2-201ENST00000328923 CCDC43Q96MW1 224 aaKnown RBP13.07□□□□□ -0.32
SHMT2-201ENST00000328923 AGAP3Q96P47 875 aa13.07□□□□□ -0.32
SHMT2-201ENST00000328923 RPS6KC1Q96S38 1066 aa13.07□□□□□ -0.32
SHMT2-201ENST00000328923 NDNQ99608 321 aa13.07□□□□□ -0.32
SHMT2-201ENST00000328923 LRRC1Q9BTT6 524 aa13.07□□□□□ -0.32
SHMT2-201ENST00000328923 NCOA5Q9HCD5 579 aaKnown RBP13.07□□□□□ -0.32
SHMT2-201ENST00000328923 COPRSQ9NQ92 184 aa13.07□□□□□ -0.32
SHMT2-201ENST00000328923 ATXN10Q9UBB4 475 aa13.07□□□□□ -0.32
SHMT2-201ENST00000328923 DBNLQ9UJU6 430 aaKnown RBP13.07□□□□□ -0.32
SHMT2-201ENST00000328923 TMEM98Q9Y2Y6 226 aa13.07□□□□□ -0.32
SHMT2-201ENST00000328923 PARP4Q9UKK3 1724 aaKnown RBP13.07□□□□□ -0.32
SHMT2-201ENST00000328923 SPEF2Q9C093 1822 aa13.07□□□□□ -0.32
SHMT2-201ENST00000328923 COL5A2P05997 1499 aaPredicted RBP13.07□□□□□ -0.32
SHMT2-201ENST00000328923 SMAPO00193 183 aa13.07□□□□□ -0.32
SHMT2-201ENST00000328923 DDX58O95786 925 aaKnown RBP13.07□□□□□ -0.32
SHMT2-201ENST00000328923 CCND1P24385 295 aa13.07□□□□□ -0.32
SHMT2-201ENST00000328923 EPHB4P54760 987 aa13.07□□□□□ -0.32
SHMT2-201ENST00000328923 ERVK-24P63145 666 aa13.07□□□□□ -0.32
SHMT2-201ENST00000328923 SF3A3Q12874 501 aaKnown RBP eCLIP13.07□□□□□ -0.326e-8■■□□□ 12.4
SHMT2-201ENST00000328923 PABPC4Q13310 644 aaKnown RBP eCLIP13.07□□□□□ -0.328e-7■■■■■ 32.8
SHMT2-201ENST00000328923 ZNF268Q14587 947 aaPredicted RBP13.07□□□□□ -0.32
SHMT2-201ENST00000328923 CWF19L2Q2TBE0 894 aaKnown RBP13.07□□□□□ -0.32
SHMT2-201ENST00000328923 LCA5Q86VQ0 697 aa13.07□□□□□ -0.32
SHMT2-201ENST00000328923 TRMT44Q8IYL2 757 aaKnown RBP13.07□□□□□ -0.32
SHMT2-201ENST00000328923 P3H4Q92791 437 aa13.07□□□□□ -0.32
SHMT2-201ENST00000328923 KIFAP3Q92845 792 aa13.07□□□□□ -0.32
SHMT2-201ENST00000328923 RPGRIP1Q96KN7 1286 aa13.07□□□□□ -0.32
SHMT2-201ENST00000328923 SLF1Q9BQI6 1058 aa13.07□□□□□ -0.32
SHMT2-201ENST00000328923 KCNMB3Q9NPA1 279 aa13.07□□□□□ -0.32
SHMT2-201ENST00000328923 NFE2L3Q9Y4A8 694 aa13.07□□□□□ -0.32
SHMT2-201ENST00000328923 COL14A1Q05707 1796 aaKnown RBP13.06□□□□□ -0.32
SHMT2-201ENST00000328923 TMEM221A6NGB7 291 aa13.06□□□□□ -0.32
SHMT2-201ENST00000328923 VIMP08670 466 aaKnown RBP13.06□□□□□ -0.32
SHMT2-201ENST00000328923 RFC5P40937 340 aa13.06□□□□□ -0.32
SHMT2-201ENST00000328923 NR1I3Q14994 352 aa13.06□□□□□ -0.32
SHMT2-201ENST00000328923 GLE1Q53GS7 698 aaKnown RBP13.06□□□□□ -0.32
SHMT2-201ENST00000328923 TNNI3KQ59H18 835 aa13.06□□□□□ -0.32
SHMT2-201ENST00000328923 CCDC129Q6ZRS4 1044 aa13.06□□□□□ -0.32
SHMT2-201ENST00000328923 KBTBD3Q8NAB2 608 aa13.06□□□□□ -0.32
SHMT2-201ENST00000328923 JAKMIP2Q96AA8 810 aa13.06□□□□□ -0.32
SHMT2-201ENST00000328923 EDC3Q96F86 508 aaKnown RBP13.06□□□□□ -0.32
SHMT2-201ENST00000328923 ATP6V1G3Q96LB4 118 aa13.06□□□□□ -0.32
SHMT2-201ENST00000328923 TBC1D7Q9P0N9 293 aa13.06□□□□□ -0.32
SHMT2-201ENST00000328923 FPGT-TNNI3KV9GXZ4 949 aa13.06□□□□□ -0.32
SHMT2-201ENST00000328923 EP400Q96L91 3159 aa13.06□□□□□ -0.32
SHMT2-201ENST00000328923 SRCAPQ6ZRS2 3230 aa13.06□□□□□ -0.32
SHMT2-201ENST00000328923 E7EWF7 191 aa13.06□□□□□ -0.32
SHMT2-201ENST00000328923 ATP2A2P16615 1042 aaKnown RBP13.06□□□□□ -0.32
SHMT2-201ENST00000328923 ZNF18P17022 549 aa13.06□□□□□ -0.32
SHMT2-201ENST00000328923 SP100P23497 879 aaPredicted RBP13.06□□□□□ -0.32
SHMT2-201ENST00000328923 TMOD1P28289 359 aa13.06□□□□□ -0.32
SHMT2-201ENST00000328923 KCNJ2P63252 427 aa13.06□□□□□ -0.32
SHMT2-201ENST00000328923 FMR1Q06787 632 aaKnown RBP eCLIP13.06□□□□□ -0.322e-11■■■■□ 22.1
SHMT2-201ENST00000328923 PRPF4BQ13523 1007 aaKnown RBP13.06□□□□□ -0.32
SHMT2-201ENST00000328923 CFAP58Q5T655 872 aa13.06□□□□□ -0.32
SHMT2-201ENST00000328923 TMEM154Q6P9G4 183 aa13.06□□□□□ -0.32
SHMT2-201ENST00000328923 TOM1L2Q6ZVM7 507 aa13.06□□□□□ -0.32
SHMT2-201ENST00000328923 CCDC155Q8N6L0 562 aa13.06□□□□□ -0.32
SHMT2-201ENST00000328923 TFR2Q9UP52 801 aa13.06□□□□□ -0.32
SHMT2-201ENST00000328923 SLC12A4Q9UP95 1085 aa13.06□□□□□ -0.32
SHMT2-201ENST00000328923 C5orf60A6NFR6 353 aa13.05□□□□□ -0.32
SHMT2-201ENST00000328923 CCT8L1PA6NM43 557 aa13.05□□□□□ -0.32
SHMT2-201ENST00000328923 PHF20L1A8MW92 1017 aa13.05□□□□□ -0.32
SHMT2-201ENST00000328923 PSMD14O00487 310 aa13.05□□□□□ -0.32
SHMT2-201ENST00000328923 MFAP3LO75121 409 aa13.05□□□□□ -0.32
SHMT2-201ENST00000328923 E2F6O75461 281 aa13.05□□□□□ -0.32
SHMT2-201ENST00000328923 TRIM37O94972 964 aa13.05□□□□□ -0.32
SHMT2-201ENST00000328923 BMP6P22004 513 aa13.05□□□□□ -0.32
SHMT2-201ENST00000328923 CASP14P31944 242 aa13.05□□□□□ -0.32
SHMT2-201ENST00000328923 ALDH5A1P51649 535 aaPredicted RBP13.05□□□□□ -0.32
SHMT2-201ENST00000328923 MRPS35P82673 323 aaKnown RBP13.05□□□□□ -0.32
SHMT2-201ENST00000328923 CUL4BQ13620 913 aa13.05□□□□□ -0.32
SHMT2-201ENST00000328923 FOXB2Q5VYV0 432 aa13.05□□□□□ -0.32
SHMT2-201ENST00000328923 EMBQ6PCB8 327 aa13.05□□□□□ -0.32
SHMT2-201ENST00000328923 DYDC1Q8WWB3 177 aa13.05□□□□□ -0.32
SHMT2-201ENST00000328923 FAM81BQ96LP2 452 aa13.05□□□□□ -0.32
SHMT2-201ENST00000328923 FGD4Q96M96 766 aa13.05□□□□□ -0.32
SHMT2-201ENST00000328923 GFPT2O94808 682 aa13.05□□□□□ -0.32
SHMT2-201ENST00000328923 PSMC4P43686 418 aa13.05□□□□□ -0.32
SHMT2-201ENST00000328923 KIF23Q02241 960 aaPredicted RBP13.05□□□□□ -0.32
SHMT2-201ENST00000328923 MYBPC2Q14324 1141 aa13.05□□□□□ -0.32
SHMT2-201ENST00000328923 LBRQ14739 615 aaKnown RBP13.05□□□□□ -0.32
SHMT2-201ENST00000328923 KBTBD12Q3ZCT8 623 aa13.05□□□□□ -0.32
SHMT2-201ENST00000328923 GKAP1Q5VSY0 366 aaPredicted RBP13.05□□□□□ -0.32
SHMT2-201ENST00000328923 PAPD7Q5XG87 772 aaKnown RBP13.05□□□□□ -0.32
SHMT2-201ENST00000328923 IQCKQ8N0W5 287 aa13.05□□□□□ -0.32
SHMT2-201ENST00000328923 MLKLQ8NB16 471 aa13.05□□□□□ -0.32
SHMT2-201ENST00000328923 CORO1BQ9BR76 489 aa13.05□□□□□ -0.32
SHMT2-201ENST00000328923 DDX21Q9NR30 783 aaKnown RBP eCLIP13.05□□□□□ -0.32
SHMT2-201ENST00000328923 SAMSN1Q9NSI8 373 aaKnown RBP13.05□□□□□ -0.32
SHMT2-201ENST00000328923 TUBGCP4Q9UGJ1 667 aa13.05□□□□□ -0.32
SHMT2-201ENST00000328923 DACH1Q9UI36 760 aa13.05□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms