RNA–Protein interactions for RNA: ENST00000311487.9

HMGA1-201, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene HMGA1, Length 1,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-201ENST00000311487 ZMYND12Q9H0C1 365 aa20.86■□□□□ 0.93
HMGA1-201ENST00000311487 MROH8Q9H579 483 aa20.86■□□□□ 0.93
HMGA1-201ENST00000311487 SAGE1Q9NXZ1 904 aa20.86■□□□□ 0.93
HMGA1-201ENST00000311487 BTBD18B2RXH4 712 aa20.85■□□□□ 0.93
HMGA1-201ENST00000311487 FCER1AP12319 257 aa20.85■□□□□ 0.93
HMGA1-201ENST00000311487 ADORA2AP29274 412 aa20.85■□□□□ 0.93
HMGA1-201ENST00000311487 KCTD2Q14681 263 aa20.85■□□□□ 0.93
HMGA1-201ENST00000311487 PLEKHH3Q7Z736 793 aa20.85■□□□□ 0.93
HMGA1-201ENST00000311487 FERMT3Q86UX7 667 aa20.85■□□□□ 0.93
HMGA1-201ENST00000311487 FBXO18Q8NFZ0 1043 aa20.85■□□□□ 0.93
HMGA1-201ENST00000311487 CUL5Q93034 780 aa20.85■□□□□ 0.93
HMGA1-201ENST00000311487 CFHR5Q9BXR6 569 aa20.85■□□□□ 0.93
HMGA1-201ENST00000311487 CYP39A1Q9NYL5 469 aa20.85■□□□□ 0.93
HMGA1-201ENST00000311487 IVNS1ABPQ9Y6Y0 642 aa20.85■□□□□ 0.93
HMGA1-201ENST00000311487 HSPA1AP0DMV8 641 aaKnown RBP20.84■□□□□ 0.93
HMGA1-201ENST00000311487 HSPA1BP0DMV9 641 aaKnown RBP20.84■□□□□ 0.93
HMGA1-201ENST00000311487 XBP1P17861 261 aa20.84■□□□□ 0.93
HMGA1-201ENST00000311487 MAPK4P31152 587 aa20.84■□□□□ 0.93
HMGA1-201ENST00000311487 DDIT3P35638 169 aa20.84■□□□□ 0.93
HMGA1-201ENST00000311487 JMYQ8N9B5 988 aa20.84■□□□□ 0.93
HMGA1-201ENST00000311487 C6orf50Q9HD87 102 aa20.84■□□□□ 0.93
HMGA1-201ENST00000311487 RIC8AQ9NPQ8 531 aa20.84■□□□□ 0.93
HMGA1-201ENST00000311487 GABRQQ9UN88 632 aa20.84■□□□□ 0.93
HMGA1-201ENST00000311487 FAM205CA6NFA0 338 aa20.84■□□□□ 0.93
HMGA1-201ENST00000311487 GCOM1H8Y6P7 765 aaPredicted RBP20.84■□□□□ 0.93
HMGA1-201ENST00000311487 COBLO75128 1261 aa20.84■□□□□ 0.93
HMGA1-201ENST00000311487 MMP1P03956 469 aa20.84■□□□□ 0.93
HMGA1-201ENST00000311487 POLR2MP0CAP2 368 aa20.84■□□□□ 0.93
HMGA1-201ENST00000311487 CCDC148Q8NFR7 591 aa20.84■□□□□ 0.93
HMGA1-201ENST00000311487 TAAR1Q96RJ0 339 aa20.84■□□□□ 0.93
HMGA1-201ENST00000311487 SH3GLB2Q9NR46 395 aa20.84■□□□□ 0.93
HMGA1-201ENST00000311487 CHMP5Q9NZZ3 219 aa20.84■□□□□ 0.93
HMGA1-201ENST00000311487 KIF28PB7ZC32 967 aa20.83■□□□□ 0.93
HMGA1-201ENST00000311487 FKTNO75072 461 aa20.83■□□□□ 0.93
HMGA1-201ENST00000311487 TKFCQ3LXA3 575 aa20.83■□□□□ 0.93
HMGA1-201ENST00000311487 EARS2Q5JPH6 523 aaKnown RBP20.83■□□□□ 0.93
HMGA1-201ENST00000311487 DIS3L2Q8IYB7 885 aaKnown RBP20.83■□□□□ 0.93
HMGA1-201ENST00000311487 BLIDQ8IZY5 108 aa20.83■□□□□ 0.93
HMGA1-201ENST00000311487 SHCBP1Q8NEM2 672 aa20.83■□□□□ 0.93
HMGA1-201ENST00000311487 SYTL5Q8TDW5 730 aaPredicted RBP20.83■□□□□ 0.93
HMGA1-201ENST00000311487 CCDC12Q8WUD4 166 aaPredicted RBP20.83■□□□□ 0.93
HMGA1-201ENST00000311487 PCDHA4Q9UN74 947 aa20.83■□□□□ 0.93
HMGA1-201ENST00000311487 hCG_1984214I3L0E3 225 aa20.82■□□□□ 0.92
HMGA1-201ENST00000311487 PTPREP23469 700 aa20.82■□□□□ 0.92
HMGA1-201ENST00000311487 LBX1P52954 281 aa20.82■□□□□ 0.92
HMGA1-201ENST00000311487 FCGRTP55899 365 aa20.82■□□□□ 0.92
HMGA1-201ENST00000311487 FOXD4L6Q3SYB3 417 aaPredicted RBP20.82■□□□□ 0.92
HMGA1-201ENST00000311487 FOXD4L3Q6VB84 417 aaPredicted RBP20.82■□□□□ 0.92
HMGA1-201ENST00000311487 MCF2L2Q86YR7 1114 aa20.82■□□□□ 0.92
HMGA1-201ENST00000311487 ZNF713Q8N859 430 aaPredicted RBP20.82■□□□□ 0.92
HMGA1-201ENST00000311487 FBXO40Q9UH90 709 aa20.82■□□□□ 0.92
HMGA1-201ENST00000311487 PCDHA6Q9UN73 950 aa20.82■□□□□ 0.92
HMGA1-201ENST00000311487 PCDHA8Q9Y5H6 950 aa20.82■□□□□ 0.92
HMGA1-201ENST00000311487 CYP2B6P20813 491 aa20.82■□□□□ 0.92
HMGA1-201ENST00000311487 MRPL12P52815 198 aaKnown RBP20.82■□□□□ 0.92
HMGA1-201ENST00000311487 DPP9Q86TI2 863 aa20.82■□□□□ 0.92
HMGA1-201ENST00000311487 KIF3AQ9Y496 699 aa20.82■□□□□ 0.92
HMGA1-201ENST00000311487 CASP8AP2Q9UKL3 1982 aa20.81■□□□□ 0.92
HMGA1-201ENST00000311487 GNA11P29992 359 aa20.81■□□□□ 0.92
HMGA1-201ENST00000311487 PRKCZQ05513 592 aa20.81■□□□□ 0.92
HMGA1-201ENST00000311487 GNL2Q13823 731 aaKnown RBP20.81■□□□□ 0.92
HMGA1-201ENST00000311487 KIF22Q14807 665 aa20.81■□□□□ 0.92
HMGA1-201ENST00000311487 PPP1R18Q6NYC8 613 aa20.81■□□□□ 0.92
HMGA1-201ENST00000311487 REXO1Q8N1G1 1221 aaKnown RBP20.81■□□□□ 0.92
HMGA1-201ENST00000311487 ASTN1O14525 1302 aa20.81■□□□□ 0.92
HMGA1-201ENST00000311487 POTEB2H3BUK9 544 aa20.8■□□□□ 0.92
HMGA1-201ENST00000311487 STX6O43752 255 aa20.8■□□□□ 0.92
HMGA1-201ENST00000311487 EIF2AK2P19525 551 aaKnown RBP20.8■□□□□ 0.92
HMGA1-201ENST00000311487 KRT2P35908 639 aa20.8■□□□□ 0.92
HMGA1-201ENST00000311487 HSD17B4P51659 736 aa20.8■□□□□ 0.92
HMGA1-201ENST00000311487 TRAF1Q13077 416 aa20.8■□□□□ 0.92
HMGA1-201ENST00000311487 PLXNB2O15031 1838 aa20.8■□□□□ 0.92
HMGA1-201ENST00000311487 ZNFX1Q9P2E3 1918 aaKnown RBP20.8■□□□□ 0.92
HMGA1-201ENST00000311487 GRB14Q14449 540 aa20.8■□□□□ 0.92
HMGA1-201ENST00000311487 CCL14Q16627 93 aa20.8■□□□□ 0.92
HMGA1-201ENST00000311487 PIK3AP1Q6ZUJ8 805 aa20.8■□□□□ 0.92
HMGA1-201ENST00000311487 NPLOC4Q8TAT6 608 aa20.8■□□□□ 0.92
HMGA1-201ENST00000311487 UIMC1Q96RL1 719 aa20.8■□□□□ 0.92
HMGA1-201ENST00000311487 GJD2Q9UKL4 321 aa20.8■□□□□ 0.92
HMGA1-201ENST00000311487 PNMA2Q9UL42 364 aa20.8■□□□□ 0.92
HMGA1-201ENST00000311487 MTMR6Q9Y217 621 aa20.8■□□□□ 0.92
HMGA1-201ENST00000311487 SOWAHBA6NEL2 793 aa20.79■□□□□ 0.92
HMGA1-201ENST00000311487 ATP2B1P20020 1258 aa20.79■□□□□ 0.92
HMGA1-201ENST00000311487 FLT3LGP49771 235 aa20.79■□□□□ 0.92
HMGA1-201ENST00000311487 FAM173BQ6P4H8 233 aa20.79■□□□□ 0.92
HMGA1-201ENST00000311487 RMDN3Q96TC7 470 aa20.79■□□□□ 0.92
HMGA1-201ENST00000311487 ESYT2A0FGR8 921 aa20.78■□□□□ 0.92
HMGA1-201ENST00000311487 SPDYE3A6NKU9 549 aa20.78■□□□□ 0.92
HMGA1-201ENST00000311487 STRNO43815 780 aa20.78■□□□□ 0.92
HMGA1-201ENST00000311487 HSPA8P11142 646 aaKnown RBP20.78■□□□□ 0.92
HMGA1-201ENST00000311487 COPB2P35606 906 aa20.78■□□□□ 0.92
HMGA1-201ENST00000311487 CLK2P49760 499 aaKnown RBP20.78■□□□□ 0.92
HMGA1-201ENST00000311487 SAFBQ15424 915 aaKnown RBP eCLIP20.78■□□□□ 0.92
HMGA1-201ENST00000311487 MORN1Q5T089 497 aa20.78■□□□□ 0.92
HMGA1-201ENST00000311487 EEPD1Q7L9B9 569 aa20.78■□□□□ 0.92
HMGA1-201ENST00000311487 IL31RAQ8NI17 732 aa20.78■□□□□ 0.92
HMGA1-201ENST00000311487 CHAMP1Q96JM3 812 aa20.78■□□□□ 0.92
HMGA1-201ENST00000311487 MGAMO43451 1857 aa20.78■□□□□ 0.92
HMGA1-201ENST00000311487 M0R2N6 131 aa20.78■□□□□ 0.92
HMGA1-201ENST00000311487 PDCP20941 246 aa20.78■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms