RNA–Protein interactions for RNA: ENST00000295550.8

COL6A3-201, Transcript of collagen type VI alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL6A3, Length 10,749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-201ENST00000295550 IFNL3Q8IZI9 196 aa10.78□□□□□ -0.68
COL6A3-201ENST00000295550 SCYL1Q96KG9 808 aa10.78□□□□□ -0.68
COL6A3-201ENST00000295550 REXO1Q8N1G1 1221 aaKnown RBP10.78□□□□□ -0.68
COL6A3-201ENST00000295550 WDR19Q8NEZ3 1342 aa10.78□□□□□ -0.68
COL6A3-201ENST00000295550 MAN1A2O60476 641 aa10.78□□□□□ -0.68
COL6A3-201ENST00000295550 RPSAP08865 295 aaKnown RBP10.78□□□□□ -0.68
COL6A3-201ENST00000295550 HIBADHP31937 336 aaKnown RBP10.78□□□□□ -0.68
COL6A3-201ENST00000295550 SPATA1Q5VX52 437 aa10.78□□□□□ -0.68
COL6A3-201ENST00000295550 AATFQ9NY61 560 aaKnown RBP eCLIP10.78□□□□□ -0.68
COL6A3-201ENST00000295550 LONRF2Q1L5Z9 754 aa10.78□□□□□ -0.68
COL6A3-201ENST00000295550 BCAS4Q8TDM0 211 aa10.78□□□□□ -0.68
COL6A3-201ENST00000295550 EEF1DP29692 281 aaKnown RBP10.78□□□□□ -0.68
COL6A3-201ENST00000295550 POMGNT1Q8WZA1 660 aa10.78□□□□□ -0.68
COL6A3-201ENST00000295550 NRBF2Q96F24 287 aa10.78□□□□□ -0.68
COL6A3-201ENST00000295550 PKD2L1Q9P0L9 805 aa10.78□□□□□ -0.68
COL6A3-201ENST00000295550 PRDM1O75626 825 aa10.78□□□□□ -0.68
COL6A3-201ENST00000295550 BCRP11274 1271 aa10.78□□□□□ -0.68
COL6A3-201ENST00000295550 AMFRQ9UKV5 643 aa10.78□□□□□ -0.68
COL6A3-201ENST00000295550 LRRC24Q50LG9 513 aa10.77□□□□□ -0.68
COL6A3-201ENST00000295550 BLZF1Q9H2G9 400 aa10.77□□□□□ -0.68
COL6A3-201ENST00000295550 ABCC12Q96J65 1359 aa10.77□□□□□ -0.68
COL6A3-201ENST00000295550 TRAPPC10P48553 1259 aa10.77□□□□□ -0.69
COL6A3-201ENST00000295550 RCN2Q14257 317 aa10.77□□□□□ -0.69
COL6A3-201ENST00000295550 APOA5Q6Q788 366 aa10.77□□□□□ -0.69
COL6A3-201ENST00000295550 VSTM4Q8IW00 320 aa10.77□□□□□ -0.69
COL6A3-201ENST00000295550 TEX11Q8IYF3 940 aa10.77□□□□□ -0.69
COL6A3-201ENST00000295550 CACTINQ8WUQ7 758 aaKnown RBP10.77□□□□□ -0.69
COL6A3-201ENST00000295550 PPWD1Q96BP3 646 aaKnown RBP10.77□□□□□ -0.69
COL6A3-201ENST00000295550 USP42Q9H9J4 1324 aaKnown RBP10.77□□□□□ -0.69
COL6A3-201ENST00000295550 MYH7P12883 1935 aa10.77□□□□□ -0.69
COL6A3-201ENST00000295550 KIF23Q02241 960 aaPredicted RBP10.77□□□□□ -0.69
COL6A3-201ENST00000295550 SP4Q02446 784 aa10.77□□□□□ -0.69
COL6A3-201ENST00000295550 LINC00301Q8NCQ3 95 aa10.77□□□□□ -0.69
COL6A3-201ENST00000295550 YY1AP1Q9H869 796 aa10.77□□□□□ -0.69
COL6A3-201ENST00000295550 SCINQ9Y6U3 715 aa10.77□□□□□ -0.69
COL6A3-201ENST00000295550 CROCCQ5TZA2 2017 aa10.77□□□□□ -0.69
COL6A3-201ENST00000295550 GNA14O95837 355 aa10.77□□□□□ -0.69
COL6A3-201ENST00000295550 GPIHBP1Q8IV16 184 aa10.77□□□□□ -0.69
COL6A3-201ENST00000295550 RBM17Q96I25 401 aaKnown RBP10.77□□□□□ -0.69
COL6A3-201ENST00000295550 EXOC7Q9UPT5 735 aa10.77□□□□□ -0.69
COL6A3-201ENST00000295550 KDM3AQ9Y4C1 1321 aa10.77□□□□□ -0.69
COL6A3-201ENST00000295550 ADCY8P40145 1251 aa10.77□□□□□ -0.69
COL6A3-201ENST00000295550 CYP2E1P05181 493 aaPredicted RBP10.77□□□□□ -0.69
COL6A3-201ENST00000295550 GSDMAQ96QA5 445 aa10.77□□□□□ -0.69
COL6A3-201ENST00000295550 TBC1D7Q9P0N9 293 aa10.77□□□□□ -0.69
COL6A3-201ENST00000295550 TOB2Q14106 344 aaPredicted RBP10.77□□□□□ -0.69
COL6A3-201ENST00000295550 KRT81Q14533 505 aa10.77□□□□□ -0.69
COL6A3-201ENST00000295550 C16orf87Q6PH81 154 aa10.77□□□□□ -0.69
COL6A3-201ENST00000295550 SYMPKQ92797 1274 aaKnown RBP10.77□□□□□ -0.69
COL6A3-201ENST00000295550 RTCBQ9Y3I0 505 aaKnown RBP10.77□□□□□ -0.69
COL6A3-201ENST00000295550 SH2B2O14492 632 aaPredicted RBP10.76□□□□□ -0.69
COL6A3-201ENST00000295550 ARHGEF25Q86VW2 580 aa10.76□□□□□ -0.69
COL6A3-201ENST00000295550 PALM2Q8IXS6 379 aa10.76□□□□□ -0.69
COL6A3-201ENST00000295550 CNBD1Q8NA66 436 aa10.76□□□□□ -0.69
COL6A3-201ENST00000295550 BTG4Q9NY30 223 aa10.76□□□□□ -0.69
COL6A3-201ENST00000295550 MAP3K7O43318 606 aa10.76□□□□□ -0.69
COL6A3-201ENST00000295550 KLHL30Q0D2K2 578 aa10.76□□□□□ -0.69
COL6A3-201ENST00000295550 RRAGAQ7L523 313 aa10.76□□□□□ -0.69
COL6A3-201ENST00000295550 SCYL3Q8IZE3 742 aa10.76□□□□□ -0.69
COL6A3-201ENST00000295550 MAP3K15Q6ZN16 1313 aa10.76□□□□□ -0.69
COL6A3-201ENST00000295550 CCDC169A6NNP5 214 aa10.76□□□□□ -0.69
COL6A3-201ENST00000295550 RSBN1LQ6PCB5 846 aaPredicted RBP10.76□□□□□ -0.69
COL6A3-201ENST00000295550 ERBB3P21860 1342 aa10.76□□□□□ -0.69
COL6A3-201ENST00000295550 E2F5Q15329 346 aa10.76□□□□□ -0.69
COL6A3-201ENST00000295550 OR8K1Q8NGG5 319 aa10.76□□□□□ -0.69
COL6A3-201ENST00000295550 MRPL44Q9H9J2 332 aaKnown RBP10.76□□□□□ -0.69
COL6A3-201ENST00000295550 PPME1Q9Y570 386 aa10.76□□□□□ -0.69
COL6A3-201ENST00000295550 TNKSO95271 1327 aa10.76□□□□□ -0.69
COL6A3-201ENST00000295550 LAD1O00515 517 aa10.76□□□□□ -0.69
COL6A3-201ENST00000295550 SYF2O95926 243 aaKnown RBP10.76□□□□□ -0.69
COL6A3-201ENST00000295550 IFNB1P01574 187 aa10.76□□□□□ -0.69
COL6A3-201ENST00000295550 ADORA1P30542 326 aa10.76□□□□□ -0.69
COL6A3-201ENST00000295550 LARP7Q4G0J3 582 aaKnown RBP eCLIP10.76□□□□□ -0.69
COL6A3-201ENST00000295550 TTC4O95801 387 aa10.76□□□□□ -0.69
COL6A3-201ENST00000295550 SCG2P13521 617 aa10.76□□□□□ -0.69
COL6A3-201ENST00000295550 CASP2P42575 452 aa10.76□□□□□ -0.69
COL6A3-201ENST00000295550 TTLL7Q6ZT98 887 aa10.76□□□□□ -0.69
COL6A3-201ENST00000295550 BLIDQ8IZY5 108 aa10.76□□□□□ -0.69
COL6A3-201ENST00000295550 LRRC8CQ8TDW0 803 aa10.76□□□□□ -0.69
COL6A3-201ENST00000295550 GRK7Q8WTQ7 553 aa10.76□□□□□ -0.69
COL6A3-201ENST00000295550 LSM14BQ9BX40 385 aaKnown RBP10.76□□□□□ -0.69
COL6A3-201ENST00000295550 LONP1P36776 959 aaKnown RBP10.76□□□□□ -0.69
COL6A3-201ENST00000295550 PLA2G4DQ86XP0 818 aa10.76□□□□□ -0.69
COL6A3-201ENST00000295550 LRWD1Q9UFC0 647 aa10.76□□□□□ -0.69
COL6A3-201ENST00000295550 OVOS2A0A0J9YW53 1432 aa10.76□□□□□ -0.69
COL6A3-201ENST00000295550 OVOS2Q6IE36 1432 aa10.76□□□□□ -0.69
COL6A3-201ENST00000295550 PTPRUQ92729 1446 aa10.76□□□□□ -0.69
COL6A3-201ENST00000295550 RPN1P04843 607 aaKnown RBP10.76□□□□□ -0.69
COL6A3-201ENST00000295550 EEF1B2P24534 225 aaKnown RBP10.76□□□□□ -0.69
COL6A3-201ENST00000295550 NSMCE1Q8WV22 266 aa10.76□□□□□ -0.69
COL6A3-201ENST00000295550 GOLGA8QA0A0J9YX86 632 aa10.76□□□□□ -0.69
COL6A3-201ENST00000295550 GOLGA8OA6NCC3 632 aa10.76□□□□□ -0.69
COL6A3-201ENST00000295550 GOLGA8NF8WBI6 632 aa10.76□□□□□ -0.69
COL6A3-201ENST00000295550 FNBP4Q8N3X1 1017 aaPredicted RBP10.76□□□□□ -0.69
COL6A3-201ENST00000295550 MAIP1Q8WWC4 291 aa10.76□□□□□ -0.69
COL6A3-201ENST00000295550 CUEDC2Q9H467 287 aa10.76□□□□□ -0.69
COL6A3-201ENST00000295550 PALMDQ9NP74 551 aa10.76□□□□□ -0.69
COL6A3-201ENST00000295550 MYH8P13535 1937 aa10.76□□□□□ -0.69
COL6A3-201ENST00000295550 ESYT2A0FGR8 921 aa10.75□□□□□ -0.69
COL6A3-201ENST00000295550 H7C1D1 291 aa10.75□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms