RNA–Protein interactions for RNA: ENST00000295522.3

CLDN1-201, Transcript of claudin 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLDN1, Length 3,481 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN1-201ENST00000295522 RCSD1Q6JBY9 416 aa11.24□□□□□ -0.61
CLDN1-201ENST00000295522 CCDC26Q8TAB7 109 aa11.24□□□□□ -0.61
CLDN1-201ENST00000295522 AGAP11Q8TF27 550 aa11.24□□□□□ -0.61
CLDN1-201ENST00000295522 CAPN11Q9UMQ6 739 aa11.24□□□□□ -0.61
CLDN1-201ENST00000295522 C15orf41Q9Y2V0 281 aa11.24□□□□□ -0.61
CLDN1-201ENST00000295522 KIF5BP33176 963 aa11.23□□□□□ -0.61
CLDN1-201ENST00000295522 IL15P40933 162 aaPredicted RBP11.23□□□□□ -0.61
CLDN1-201ENST00000295522 DNM2P50570 870 aa11.23□□□□□ -0.61
CLDN1-201ENST00000295522 CCDC57Q2TAC2 916 aa11.23□□□□□ -0.61
CLDN1-201ENST00000295522 NBPF9Q3BBW0 867 aa11.23□□□□□ -0.61
CLDN1-201ENST00000295522 IQCKQ8N0W5 287 aa11.23□□□□□ -0.61
CLDN1-201ENST00000295522 TSC22D3Q99576 134 aa11.23□□□□□ -0.61
CLDN1-201ENST00000295522 PPP1R12CQ9BZL4 782 aa11.23□□□□□ -0.61
CLDN1-201ENST00000295522 NUCKS1Q9H1E3 243 aaKnown RBP11.23□□□□□ -0.61
CLDN1-201ENST00000295522 DLC1Q96QB1 1528 aa11.23□□□□□ -0.61
CLDN1-201ENST00000295522 CEP104O60308 925 aa11.23□□□□□ -0.61
CLDN1-201ENST00000295522 NEFHP12036 1026 aa11.23□□□□□ -0.61
CLDN1-201ENST00000295522 SLC8A3P57103 927 aa11.23□□□□□ -0.61
CLDN1-201ENST00000295522 PPP2R2AP63151 447 aa11.23□□□□□ -0.61
CLDN1-201ENST00000295522 GLE1Q53GS7 698 aaKnown RBP11.23□□□□□ -0.61
CLDN1-201ENST00000295522 RUFY4Q6ZNE9 571 aa11.23□□□□□ -0.61
CLDN1-201ENST00000295522 PIK3AP1Q6ZUJ8 805 aa11.23□□□□□ -0.61
CLDN1-201ENST00000295522 DHX30Q7L2E3 1194 aaKnown RBP eCLIP11.23□□□□□ -0.61
CLDN1-201ENST00000295522 LBHD1Q9BQE6 289 aaPredicted RBP11.23□□□□□ -0.61
CLDN1-201ENST00000295522 PANK4Q9NVE7 773 aa11.23□□□□□ -0.61
CLDN1-201ENST00000295522 ZSWIM5Q9P217 1185 aa11.23□□□□□ -0.61
CLDN1-201ENST00000295522 OVOS2A0A0J9YW53 1432 aa11.23□□□□□ -0.61
CLDN1-201ENST00000295522 OVOS2Q6IE36 1432 aa11.23□□□□□ -0.61
CLDN1-201ENST00000295522 FAM208AQ9UK61 1670 aaKnown RBP11.23□□□□□ -0.61
CLDN1-201ENST00000295522 H7C1D1 291 aa11.23□□□□□ -0.61
CLDN1-201ENST00000295522 KCNK3O14649 394 aa11.23□□□□□ -0.61
CLDN1-201ENST00000295522 DEXIO95424 95 aa11.23□□□□□ -0.61
CLDN1-201ENST00000295522 FMNL1O95466 1100 aaPredicted RBP11.23□□□□□ -0.61
CLDN1-201ENST00000295522 XDHP47989 1333 aa11.23□□□□□ -0.61
CLDN1-201ENST00000295522 MAP3K12Q12852 859 aa11.23□□□□□ -0.61
CLDN1-201ENST00000295522 GRIK3Q13003 919 aa11.23□□□□□ -0.61
CLDN1-201ENST00000295522 EARS2Q5JPH6 523 aaKnown RBP11.23□□□□□ -0.61
CLDN1-201ENST00000295522 SLC30A9Q6PML9 568 aa11.23□□□□□ -0.61
CLDN1-201ENST00000295522 SPICE1Q8N0Z3 855 aa11.23□□□□□ -0.61
CLDN1-201ENST00000295522 CAVIN3Q969G5 261 aa11.23□□□□□ -0.61
CLDN1-201ENST00000295522 OSBPL1AQ9BXW6 950 aa11.23□□□□□ -0.61
CLDN1-201ENST00000295522 GOLPH3Q9H4A6 298 aa11.23□□□□□ -0.61
CLDN1-201ENST00000295522 RMND1Q9NWS8 449 aa11.23□□□□□ -0.61
CLDN1-201ENST00000295522 V9GY48 417 aaPredicted RBP11.23□□□□□ -0.61
CLDN1-201ENST00000295522 TMEM2Q9UHN6 1383 aa11.22□□□□□ -0.61
CLDN1-201ENST00000295522 ATXN2Q99700 1313 aaKnown RBP11.22□□□□□ -0.61
CLDN1-201ENST00000295522 RAD51CO43502 376 aa11.22□□□□□ -0.61
CLDN1-201ENST00000295522 KRT2P35908 639 aa11.22□□□□□ -0.61
CLDN1-201ENST00000295522 HSD17B3P37058 310 aa11.22□□□□□ -0.61
CLDN1-201ENST00000295522 ZBED6P86452 979 aa11.22□□□□□ -0.61
CLDN1-201ENST00000295522 PRPF4BQ13523 1007 aaKnown RBP11.22□□□□□ -0.61
CLDN1-201ENST00000295522 TTC38Q5R3I4 469 aa11.22□□□□□ -0.61
CLDN1-201ENST00000295522 MFSD6Q6ZSS7 791 aa11.22□□□□□ -0.61
CLDN1-201ENST00000295522 ADAT2Q7Z6V5 191 aaKnown RBP11.22□□□□□ -0.61
CLDN1-201ENST00000295522 DNAJC7Q99615 494 aa11.22□□□□□ -0.61
CLDN1-201ENST00000295522 FBXL5Q9UKA1 691 aa11.22□□□□□ -0.61
CLDN1-201ENST00000295522 KLHL33A6NCF5 533 aa11.22□□□□□ -0.61
CLDN1-201ENST00000295522 POLE2P56282 527 aa11.22□□□□□ -0.61
CLDN1-201ENST00000295522 TNNC1P63316 161 aa11.22□□□□□ -0.61
CLDN1-201ENST00000295522 NTRK3Q16288 839 aa11.22□□□□□ -0.61
CLDN1-201ENST00000295522 PPP4R3AQ6IN85 833 aa11.22□□□□□ -0.61
CLDN1-201ENST00000295522 RPUSD2Q8IZ73 545 aaKnown RBP11.22□□□□□ -0.61
CLDN1-201ENST00000295522 RAPGEF4Q8WZA2 1011 aa11.22□□□□□ -0.61
CLDN1-201ENST00000295522 CNOT6LQ96LI5 555 aaKnown RBP11.22□□□□□ -0.61
CLDN1-201ENST00000295522 FOXP1Q9H334 677 aaPredicted RBP11.22□□□□□ -0.61
CLDN1-201ENST00000295522 SH2D4AQ9H788 454 aa11.22□□□□□ -0.61
CLDN1-201ENST00000295522 AATFQ9NY61 560 aaKnown RBP eCLIP11.22□□□□□ -0.61
CLDN1-201ENST00000295522 ATP8A1Q9Y2Q0 1164 aa11.22□□□□□ -0.61
CLDN1-201ENST00000295522 MYH10P35580 1976 aa11.22□□□□□ -0.61
CLDN1-201ENST00000295522 EYA2O00167 538 aa11.22□□□□□ -0.61
CLDN1-201ENST00000295522 WNT7AO00755 349 aa11.22□□□□□ -0.61
CLDN1-201ENST00000295522 ZNF263O14978 683 aa11.22□□□□□ -0.61
CLDN1-201ENST00000295522 TRAPPC3O43617 180 aa11.22□□□□□ -0.61
CLDN1-201ENST00000295522 ZFYP08048 801 aaPredicted RBP11.22□□□□□ -0.61
CLDN1-201ENST00000295522 GNAT1P11488 350 aa11.22□□□□□ -0.61
CLDN1-201ENST00000295522 HLFQ16534 295 aa11.22□□□□□ -0.61
CLDN1-201ENST00000295522 ZNF658Q5TYW1 1059 aaPredicted RBP11.22□□□□□ -0.61
CLDN1-201ENST00000295522 C3orf20Q8ND61 904 aa11.22□□□□□ -0.61
CLDN1-201ENST00000295522 KLHL29Q96CT2 875 aa11.22□□□□□ -0.61
CLDN1-201ENST00000295522 TMEM87BQ96K49 555 aa11.22□□□□□ -0.61
CLDN1-201ENST00000295522 TAF1DQ9H5J8 278 aaPredicted RBP11.22□□□□□ -0.61
CLDN1-201ENST00000295522 LY9Q9HBG7 655 aa11.22□□□□□ -0.61
CLDN1-201ENST00000295522 BATF3Q9NR55 127 aa11.22□□□□□ -0.61
CLDN1-201ENST00000295522 THRAP3Q9Y2W1 955 aaKnown RBP11.22□□□□□ -0.61
CLDN1-201ENST00000295522 BAZ2BQ9UIF8 2168 aaKnown RBP11.21□□□□□ -0.61
CLDN1-201ENST00000295522 CCT8L1PA6NM43 557 aa11.21□□□□□ -0.61
CLDN1-201ENST00000295522 A8MUI8 341 aa11.21□□□□□ -0.61
CLDN1-201ENST00000295522 PALMO75781 387 aa11.21□□□□□ -0.61
CLDN1-201ENST00000295522 SLC1A4P43007 532 aa11.21□□□□□ -0.61
CLDN1-201ENST00000295522 SLCO1A2P46721 670 aa11.21□□□□□ -0.61
CLDN1-201ENST00000295522 CTCFP49711 727 aaPredicted RBP11.21□□□□□ -0.61
CLDN1-201ENST00000295522 INHBEP58166 350 aa11.21□□□□□ -0.61
CLDN1-201ENST00000295522 KCNJ2P63252 427 aa11.21□□□□□ -0.61
CLDN1-201ENST00000295522 TLDC1Q6P9B6 456 aa11.21□□□□□ -0.61
CLDN1-201ENST00000295522 CNOT8Q9UFF9 292 aaKnown RBP11.21□□□□□ -0.61
CLDN1-201ENST00000295522 PNMA2Q9UL42 364 aa11.21□□□□□ -0.61
CLDN1-201ENST00000295522 FOXP2O15409 715 aa11.21□□□□□ -0.62
CLDN1-201ENST00000295522 MMEP08473 750 aa11.21□□□□□ -0.62
CLDN1-201ENST00000295522 CHADLQ6NUI6 762 aa11.21□□□□□ -0.62
CLDN1-201ENST00000295522 C6orf89Q6UWU4 347 aa11.21□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms