RNA–Protein interactions for RNA: ENST00000287008.7

PCDH1-201, Transcript of protocadherin 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene PCDH1, Length 4,793 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1-201ENST00000287008 BIRC2Q13490 618 aa20.37■□□□□ 0.85
PCDH1-201ENST00000287008 C2orf69Q8N8R5 385 aa20.37■□□□□ 0.85
PCDH1-201ENST00000287008 CELF1Q92879 486 aaKnown RBP20.37■□□□□ 0.85
PCDH1-201ENST00000287008 CEP170P1Q96L14 293 aa20.37■□□□□ 0.85
PCDH1-201ENST00000287008 NACC1Q96RE7 527 aa20.37■□□□□ 0.85
PCDH1-201ENST00000287008 APOL6Q9BWW8 343 aa20.37■□□□□ 0.85
PCDH1-201ENST00000287008 PRDM10Q9NQV6 1147 aa20.37■□□□□ 0.85
PCDH1-201ENST00000287008 KCNQ2O43526 872 aa20.37■□□□□ 0.85
PCDH1-201ENST00000287008 PRDX5P30044 214 aa20.37■□□□□ 0.85
PCDH1-201ENST00000287008 MCAMP43121 646 aa20.37■□□□□ 0.85
PCDH1-201ENST00000287008 TBC1D10BQ4KMP7 808 aaPredicted RBP20.37■□□□□ 0.85
PCDH1-201ENST00000287008 EEPD1Q7L9B9 569 aa20.37■□□□□ 0.85
PCDH1-201ENST00000287008 TMEM63CQ9P1W3 806 aa20.37■□□□□ 0.85
PCDH1-201ENST00000287008 CACNB3P54284 484 aa20.36■□□□□ 0.85
PCDH1-201ENST00000287008 TBC1D9BQ66K14 1250 aa20.36■□□□□ 0.85
PCDH1-201ENST00000287008 MIS18BP1Q6P0N0 1132 aa20.36■□□□□ 0.85
PCDH1-201ENST00000287008 SMC1BQ8NDV3 1235 aa20.36■□□□□ 0.85
PCDH1-201ENST00000287008 STRBPQ96SI9 672 aaKnown RBP20.36■□□□□ 0.85
PCDH1-201ENST00000287008 SHROOM2Q13796 1616 aa20.36■□□□□ 0.85
PCDH1-201ENST00000287008 A0A1W2PQ27 194 aa20.36■□□□□ 0.85
PCDH1-201ENST00000287008 A0A1W2PQ64 194 aa20.36■□□□□ 0.85
PCDH1-201ENST00000287008 A0A1W2PQD8 194 aa20.36■□□□□ 0.85
PCDH1-201ENST00000287008 BRIP1Q9BX63 1249 aa20.36■□□□□ 0.85
PCDH1-201ENST00000287008 CLIC4Q9Y696 253 aa20.36■□□□□ 0.85
PCDH1-201ENST00000287008 SH2B2O14492 632 aaPredicted RBP20.36■□□□□ 0.85
PCDH1-201ENST00000287008 GIPC1O14908 333 aa20.36■□□□□ 0.85
PCDH1-201ENST00000287008 CERKQ8TCT0 537 aa20.36■□□□□ 0.85
PCDH1-201ENST00000287008 SNAP23O00161 211 aa20.35■□□□□ 0.85
PCDH1-201ENST00000287008 PSMC4P43686 418 aa20.35■□□□□ 0.85
PCDH1-201ENST00000287008 CFAP221Q4G0U5 840 aa20.35■□□□□ 0.85
PCDH1-201ENST00000287008 CCT6BQ92526 530 aa20.35■□□□□ 0.85
PCDH1-201ENST00000287008 GSDMAQ96QA5 445 aa20.35■□□□□ 0.85
PCDH1-201ENST00000287008 TDRD3Q9H7E2 651 aaKnown RBP20.35■□□□□ 0.85
PCDH1-201ENST00000287008 AMFRQ9UKV5 643 aa20.35■□□□□ 0.85
PCDH1-201ENST00000287008 TLR3O15455 904 aaKnown RBP20.35■□□□□ 0.85
PCDH1-201ENST00000287008 CCND2P30279 289 aa20.35■□□□□ 0.85
PCDH1-201ENST00000287008 Q3C1V9 767 aa20.35■□□□□ 0.85
PCDH1-201ENST00000287008 EPHA10Q5JZY3 1008 aa20.35■□□□□ 0.85
PCDH1-201ENST00000287008 SPATA1Q5VX52 437 aa20.35■□□□□ 0.85
PCDH1-201ENST00000287008 IFT20Q8IY31 132 aa20.35■□□□□ 0.85
PCDH1-201ENST00000287008 TET3O43151 1660 aa20.35■□□□□ 0.85
PCDH1-201ENST00000287008 ITIH3Q06033 890 aa20.35■□□□□ 0.85
PCDH1-201ENST00000287008 CDC37Q16543 378 aaPredicted RBP20.35■□□□□ 0.85
PCDH1-201ENST00000287008 CASC4Q6P4E1 433 aa20.35■□□□□ 0.85
PCDH1-201ENST00000287008 TICAM2Q86XR7 235 aa20.35■□□□□ 0.85
PCDH1-201ENST00000287008 CDHR2Q9BYE9 1310 aa20.34■□□□□ 0.85
PCDH1-201ENST00000287008 GAP43P17677 238 aa20.34■□□□□ 0.85
PCDH1-201ENST00000287008 HADHQ16836 314 aaKnown RBP20.34■□□□□ 0.85
PCDH1-201ENST00000287008 SCYL2Q6P3W7 929 aa20.34■□□□□ 0.85
PCDH1-201ENST00000287008 PGBD1Q96JS3 809 aa20.34■□□□□ 0.85
PCDH1-201ENST00000287008 PRKAG2Q9UGJ0 569 aa20.34■□□□□ 0.85
PCDH1-201ENST00000287008 PCDHA5Q9Y5H7 936 aa20.34■□□□□ 0.85
PCDH1-201ENST00000287008 NDUFA8P51970 172 aa20.34■□□□□ 0.85
PCDH1-201ENST00000287008 KMT5BQ4FZB7 885 aa20.34■□□□□ 0.85
PCDH1-201ENST00000287008 ERO1AQ96HE7 468 aa20.34■□□□□ 0.85
PCDH1-201ENST00000287008 RIPOR2Q9Y4F9 1068 aa20.34■□□□□ 0.85
PCDH1-201ENST00000287008 PDE6CP51160 858 aa20.34■□□□□ 0.85
PCDH1-201ENST00000287008 KLHL7Q8IXQ5 586 aa20.34■□□□□ 0.85
PCDH1-201ENST00000287008 CPSF1Q10570 1443 aaKnown RBP20.34■□□□□ 0.85
PCDH1-201ENST00000287008 SH3BP5O60239 455 aa20.34■□□□□ 0.85
PCDH1-201ENST00000287008 HDXQ7Z353 690 aa20.34■□□□□ 0.85
PCDH1-201ENST00000287008 CCDC89Q8N998 374 aa20.34■□□□□ 0.85
PCDH1-201ENST00000287008 GSDMBQ8TAX9 411 aa20.34■□□□□ 0.85
PCDH1-201ENST00000287008 MRRFQ96E11 262 aaKnown RBP20.34■□□□□ 0.85
PCDH1-201ENST00000287008 ZNF215Q9UL58 517 aaPredicted RBP20.33■□□□□ 0.85
PCDH1-201ENST00000287008 PRPF3O43395 683 aaKnown RBP20.33■□□□□ 0.85
PCDH1-201ENST00000287008 CAPN2P17655 700 aa20.33■□□□□ 0.85
PCDH1-201ENST00000287008 EIF2AK2P19525 551 aaKnown RBP20.33■□□□□ 0.85
PCDH1-201ENST00000287008 SYNE4Q8N205 404 aa20.33■□□□□ 0.85
PCDH1-201ENST00000287008 ECE2O60344 883 aa20.33■□□□□ 0.84
PCDH1-201ENST00000287008 PPP6R2O75170 966 aa20.33■□□□□ 0.84
PCDH1-201ENST00000287008 IFNB1P01574 187 aa20.33■□□□□ 0.84
PCDH1-201ENST00000287008 KMT5AQ9NQR1 393 aa20.33■□□□□ 0.84
PCDH1-201ENST00000287008 CRCPO75575 148 aa20.33■□□□□ 0.84
PCDH1-201ENST00000287008 H2AFZP0C0S5 128 aa20.33■□□□□ 0.84
PCDH1-201ENST00000287008 ADKP55263 362 aaKnown RBP20.33■□□□□ 0.84
PCDH1-201ENST00000287008 BPIFB4P59827 614 aa20.33■□□□□ 0.84
PCDH1-201ENST00000287008 EN1Q05925 392 aaPredicted RBP20.33■□□□□ 0.84
PCDH1-201ENST00000287008 IFRD2Q12894 506 aaPredicted RBP20.33■□□□□ 0.84
PCDH1-201ENST00000287008 EXOC3L4Q17RC7 722 aa20.33■□□□□ 0.84
PCDH1-201ENST00000287008 LGSNQ5TDP6 509 aa20.33■□□□□ 0.84
PCDH1-201ENST00000287008 H2AFVQ71UI9 128 aa20.33■□□□□ 0.84
PCDH1-201ENST00000287008 GNL3Q9BVP2 549 aaKnown RBP eCLIP20.33■□□□□ 0.84
PCDH1-201ENST00000287008 RNF181Q9P0P0 153 aa20.33■□□□□ 0.84
PCDH1-201ENST00000287008 POLR2FP61218 127 aaKnown RBP20.32■□□□□ 0.84
PCDH1-201ENST00000287008 NR5A1Q13285 461 aa20.32■□□□□ 0.84
PCDH1-201ENST00000287008 PDXDC2PQ6P474 469 aa20.32■□□□□ 0.84
PCDH1-201ENST00000287008 GIMAP7Q8NHV1 300 aa20.32■□□□□ 0.84
PCDH1-201ENST00000287008 CARD6Q9BX69 1037 aa20.32■□□□□ 0.84
PCDH1-201ENST00000287008 POLR3EQ9NVU0 708 aa20.32■□□□□ 0.84
PCDH1-201ENST00000287008 CRB1P82279 1406 aa20.32■□□□□ 0.84
PCDH1-201ENST00000287008 PNMA6FA0A0J9YX94 578 aa20.32■□□□□ 0.84
PCDH1-201ENST00000287008 SND1Q7KZF4 910 aaKnown RBP eCLIP20.32■□□□□ 0.84
PCDH1-201ENST00000287008 NT5C1BQ96P26 610 aa20.32■□□□□ 0.84
PCDH1-201ENST00000287008 SAMD15Q9P1V8 674 aa20.32■□□□□ 0.84
PCDH1-201ENST00000287008 STK17AQ9UEE5 414 aa20.32■□□□□ 0.84
PCDH1-201ENST00000287008 RNF8O76064 485 aa20.32■□□□□ 0.84
PCDH1-201ENST00000287008 NR2F2P24468 414 aa20.32■□□□□ 0.84
PCDH1-201ENST00000287008 PTK2Q05397 1052 aa20.32■□□□□ 0.84
PCDH1-201ENST00000287008 NFIXQ14938 502 aa20.32■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms