RNA–Protein interactions for RNA: ENST00000265081.6

MSH3-201, Transcript of mutS homolog 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSH3, Length 4,092 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3-201ENST00000265081 SIAH1Q8IUQ4 282 aa12.54□□□□□ -0.4
MSH3-201ENST00000265081 TMTC1Q8IUR5 882 aa12.54□□□□□ -0.4
MSH3-201ENST00000265081 GMCL1P1Q8NEA9 526 aa12.54□□□□□ -0.4
MSH3-201ENST00000265081 TTF2Q9UNY4 1162 aaKnown RBP12.54□□□□□ -0.4
MSH3-201ENST00000265081 C6orf229H3BNL8 230 aa12.53□□□□□ -0.4
MSH3-201ENST00000265081 UBA7P41226 1012 aa12.53□□□□□ -0.4
MSH3-201ENST00000265081 ARHGAP25P42331 645 aa12.53□□□□□ -0.4
MSH3-201ENST00000265081 MTF1Q14872 753 aa12.53□□□□□ -0.4
MSH3-201ENST00000265081 SH3BP5LQ7L8J4 393 aa12.53□□□□□ -0.4
MSH3-201ENST00000265081 SMAP1Q8IYB5 467 aaPredicted RBP12.53□□□□□ -0.4
MSH3-201ENST00000265081 KIAA0895Q8NCT3 520 aa12.53□□□□□ -0.4
MSH3-201ENST00000265081 TEKT1Q969V4 418 aa12.53□□□□□ -0.4
MSH3-201ENST00000265081 MYO1AQ9UBC5 1043 aa12.53□□□□□ -0.4
MSH3-201ENST00000265081 FAM198AQ9UFP1 575 aa12.53□□□□□ -0.4
MSH3-201ENST00000265081 FER1L6Q2WGJ9 1857 aa12.53□□□□□ -0.4
MSH3-201ENST00000265081 BRCA1P38398 1863 aaKnown RBP12.53□□□□□ -0.4
MSH3-201ENST00000265081 ZBTB5O15062 677 aa12.53□□□□□ -0.4
MSH3-201ENST00000265081 CCDC175P0C221 793 aa12.53□□□□□ -0.4
MSH3-201ENST00000265081 TUBB2AQ13885 445 aa12.53□□□□□ -0.4
MSH3-201ENST00000265081 HAS1Q92839 578 aa12.53□□□□□ -0.4
MSH3-201ENST00000265081 TUBB2BQ9BVA1 445 aa12.53□□□□□ -0.4
MSH3-201ENST00000265081 USP40Q9NVE5 1235 aa12.53□□□□□ -0.4
MSH3-201ENST00000265081 TMEM260Q9NX78 707 aa12.53□□□□□ -0.4
MSH3-201ENST00000265081 OGFRQ9NZT2 677 aa12.53□□□□□ -0.4
MSH3-201ENST00000265081 SERPINA10Q9UK55 444 aa12.53□□□□□ -0.4
MSH3-201ENST00000265081 GCFC2P16383 781 aaKnown RBP12.53□□□□□ -0.4
MSH3-201ENST00000265081 CRKP46108 304 aa12.53□□□□□ -0.4
MSH3-201ENST00000265081 ZNF592Q92610 1267 aa12.53□□□□□ -0.4
MSH3-201ENST00000265081 IQCDQ96DY2 449 aa12.53□□□□□ -0.4
MSH3-201ENST00000265081 NAP1L4Q99733 375 aaKnown RBP12.53□□□□□ -0.4
MSH3-201ENST00000265081 KCNMB3Q9NPA1 279 aa12.53□□□□□ -0.4
MSH3-201ENST00000265081 ZNF446Q9NWS9 450 aa12.53□□□□□ -0.4
MSH3-201ENST00000265081 KLHL10Q6JEL2 608 aa12.52□□□□□ -0.4
MSH3-201ENST00000265081 FBXO38Q6PIJ6 1188 aa12.52□□□□□ -0.4
MSH3-201ENST00000265081 RETREG2Q8NC44 543 aa12.52□□□□□ -0.4
MSH3-201ENST00000265081 P2RX5Q93086 422 aa12.52□□□□□ -0.4
MSH3-201ENST00000265081 ERGIC2Q96RQ1 377 aa12.52□□□□□ -0.4
MSH3-201ENST00000265081 GLT8D2Q9H1C3 349 aa12.52□□□□□ -0.4
MSH3-201ENST00000265081 HNRNPH3P31942 346 aaKnown RBP12.52□□□□□ -0.4
MSH3-201ENST00000265081 SEPT2Q15019 361 aa12.52□□□□□ -0.4
MSH3-201ENST00000265081 UNC13DQ70J99 1090 aa12.52□□□□□ -0.4
MSH3-201ENST00000265081 ZC3H12CQ9C0D7 883 aaKnown RBP12.52□□□□□ -0.4
MSH3-201ENST00000265081 PARP14Q460N5 1801 aa12.52□□□□□ -0.41
MSH3-201ENST00000265081 BICDL2A1A5D9 508 aa12.52□□□□□ -0.41
MSH3-201ENST00000265081 TRIM49BA6NDI0 452 aa12.52□□□□□ -0.41
MSH3-201ENST00000265081 ZRANB2O95218 330 aaKnown RBP eCLIP12.52□□□□□ -0.41
MSH3-201ENST00000265081 ELF2Q15723 593 aa12.52□□□□□ -0.41
MSH3-201ENST00000265081 LETM2Q2VYF4 491 aa12.52□□□□□ -0.41
MSH3-201ENST00000265081 SOGA3Q5TF21 947 aa12.52□□□□□ -0.41
MSH3-201ENST00000265081 PPFIBP1Q86W92 1011 aa12.52□□□□□ -0.41
MSH3-201ENST00000265081 RAD54LQ92698 747 aa12.52□□□□□ -0.41
MSH3-201ENST00000265081 FRMPD2Q68DX3 1309 aaPredicted RBP12.52□□□□□ -0.41
MSH3-201ENST00000265081 COL4A5P29400 1685 aa12.52□□□□□ -0.41
MSH3-201ENST00000265081 WDR59Q6PJI9 974 aa12.52□□□□□ -0.41
MSH3-201ENST00000265081 BTNL9Q6UXG8 535 aa12.52□□□□□ -0.41
MSH3-201ENST00000265081 CYP26C1Q6V0L0 522 aa12.52□□□□□ -0.41
MSH3-201ENST00000265081 UBA5Q9GZZ9 404 aa12.52□□□□□ -0.41
MSH3-201ENST00000265081 BIN2Q9UBW5 565 aaPredicted RBP12.52□□□□□ -0.41
MSH3-201ENST00000265081 REXO2Q9Y3B8 237 aaKnown RBP12.52□□□□□ -0.41
MSH3-201ENST00000265081 FRMD3A2A2Y4 597 aa12.51□□□□□ -0.41
MSH3-201ENST00000265081 PSMA7O14818 248 aa12.51□□□□□ -0.41
MSH3-201ENST00000265081 AMPD3Q01432 767 aa12.51□□□□□ -0.41
MSH3-201ENST00000265081 PSMD2Q13200 908 aa12.51□□□□□ -0.41
MSH3-201ENST00000265081 CALCRLQ16602 461 aa12.51□□□□□ -0.41
MSH3-201ENST00000265081 GMCL1Q96IK5 515 aa12.51□□□□□ -0.41
MSH3-201ENST00000265081 PCDHA2Q9Y5H9 948 aa12.51□□□□□ -0.41
MSH3-201ENST00000265081 LOC285556D6RIA3 1793 aa12.51□□□□□ -0.41
MSH3-201ENST00000265081 NFIAQ12857 509 aa12.51□□□□□ -0.41
MSH3-201ENST00000265081 STK4Q13043 487 aa12.51□□□□□ -0.41
MSH3-201ENST00000265081 ZCWPW2Q504Y3 356 aa12.51□□□□□ -0.41
MSH3-201ENST00000265081 ARHGAP27Q6ZUM4 889 aa12.51□□□□□ -0.41
MSH3-201ENST00000265081 LRRC47Q8N1G4 583 aaKnown RBP12.51□□□□□ -0.41
MSH3-201ENST00000265081 MXD3Q9BW11 206 aa12.51□□□□□ -0.41
MSH3-201ENST00000265081 SEMA6BQ9H3T3 888 aa12.51□□□□□ -0.41
MSH3-201ENST00000265081 DNM2P50570 870 aa12.51□□□□□ -0.41
MSH3-201ENST00000265081 ANKRD40Q6AI12 368 aa12.51□□□□□ -0.41
MSH3-201ENST00000265081 MCTP2Q6DN12 878 aa12.51□□□□□ -0.41
MSH3-201ENST00000265081 ZFPM1Q8IX07 1006 aa12.51□□□□□ -0.41
MSH3-201ENST00000265081 UBXN6Q9BZV1 441 aa12.51□□□□□ -0.41
MSH3-201ENST00000265081 TECP42680 631 aa12.5□□□□□ -0.41
MSH3-201ENST00000265081 CUL5Q93034 780 aa12.5□□□□□ -0.41
MSH3-201ENST00000265081 COA7Q96BR5 231 aa12.5□□□□□ -0.41
MSH3-201ENST00000265081 PURBQ96QR8 312 aaKnown RBP12.5□□□□□ -0.41
MSH3-201ENST00000265081 TAB2Q9NYJ8 693 aa12.5□□□□□ -0.41
MSH3-201ENST00000265081 MYMKA6NI61 221 aa12.5□□□□□ -0.41
MSH3-201ENST00000265081 TDP2O95551 362 aa12.5□□□□□ -0.41
MSH3-201ENST00000265081 USP11P51784 963 aa12.5□□□□□ -0.41
MSH3-201ENST00000265081 STIM1Q13586 685 aa12.5□□□□□ -0.41
MSH3-201ENST00000265081 GUF1Q8N442 669 aaKnown RBP12.5□□□□□ -0.41
MSH3-201ENST00000265081 DNAJC19Q96DA6 116 aa12.5□□□□□ -0.41
MSH3-201ENST00000265081 RIMBP2O15034 1052 aa12.5□□□□□ -0.41
MSH3-201ENST00000265081 N4BP3O15049 544 aa12.5□□□□□ -0.41
MSH3-201ENST00000265081 LCA5LO95447 670 aa12.5□□□□□ -0.41
MSH3-201ENST00000265081 HLA-DOAP06340 250 aa12.5□□□□□ -0.41
MSH3-201ENST00000265081 TPM1P09493 284 aa12.5□□□□□ -0.41
MSH3-201ENST00000265081 CASQ1P31415 396 aa12.5□□□□□ -0.41
MSH3-201ENST00000265081 CCT6AP40227 531 aaKnown RBP12.5□□□□□ -0.41
MSH3-201ENST00000265081 MARSP56192 900 aaKnown RBP12.5□□□□□ -0.41
MSH3-201ENST00000265081 SPIRE1Q08AE8 756 aa12.5□□□□□ -0.41
MSH3-201ENST00000265081 AMPD2Q01433 879 aa12.49□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms