RNA–Protein interactions for RNA: ENST00000263398.10

CD44-201, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 4,589 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-201ENST00000263398 NLRP1Q9C000 1473 aa11.78□□□□□ -0.52
CD44-201ENST00000263398 PRKAB2O43741 272 aa11.78□□□□□ -0.52
CD44-201ENST00000263398 GMNNO75496 209 aa11.78□□□□□ -0.52
CD44-201ENST00000263398 NR2F2P24468 414 aa11.78□□□□□ -0.52
CD44-201ENST00000263398 ADCY8P40145 1251 aa11.78□□□□□ -0.52
CD44-201ENST00000263398 ZBED6P86452 979 aa11.78□□□□□ -0.52
CD44-201ENST00000263398 CYP4A11Q02928 519 aa11.78□□□□□ -0.52
CD44-201ENST00000263398 XKR9Q5GH70 373 aa11.78□□□□□ -0.52
CD44-201ENST00000263398 ARMCX5Q6P1M9 558 aa11.78□□□□□ -0.52
CD44-201ENST00000263398 MGARPQ8TDB4 240 aa11.78□□□□□ -0.52
CD44-201ENST00000263398 VCX3BQ9H321 246 aa11.78□□□□□ -0.52
CD44-201ENST00000263398 TYW1Q9NV66 732 aaKnown RBP11.78□□□□□ -0.52
CD44-201ENST00000263398 RNF14Q9UBS8 474 aa11.78□□□□□ -0.52
CD44-201ENST00000263398 PNMA2Q9UL42 364 aa11.78□□□□□ -0.52
CD44-201ENST00000263398 RABGAP1Q9Y3P9 1069 aa11.78□□□□□ -0.52
CD44-201ENST00000263398 HEG1Q9ULI3 1381 aa11.78□□□□□ -0.52
CD44-201ENST00000263398 PPIP5K2O43314 1243 aa11.78□□□□□ -0.52
CD44-201ENST00000263398 CCNE1P24864 410 aa11.78□□□□□ -0.52
CD44-201ENST00000263398 SF3A3Q12874 501 aaKnown RBP eCLIP11.78□□□□□ -0.52
CD44-201ENST00000263398 PTPROQ16827 1216 aa11.78□□□□□ -0.52
CD44-201ENST00000263398 LCORLQ8N3X6 602 aa11.78□□□□□ -0.52
CD44-201ENST00000263398 TEKT3Q9BXF9 490 aa11.78□□□□□ -0.52
CD44-201ENST00000263398 SOS2Q07890 1332 aaPredicted RBP11.78□□□□□ -0.52
CD44-201ENST00000263398 TESPA1A2RU30 521 aaPredicted RBP11.77□□□□□ -0.52
CD44-201ENST00000263398 NOL3O60936 208 aaKnown RBP11.77□□□□□ -0.52
CD44-201ENST00000263398 P4HA1P13674 534 aa11.77□□□□□ -0.52
CD44-201ENST00000263398 PDE6CP51160 858 aa11.77□□□□□ -0.52
CD44-201ENST00000263398 EPHB4P54760 987 aa11.77□□□□□ -0.52
CD44-201ENST00000263398 TPD52P55327 224 aaPredicted RBP11.77□□□□□ -0.52
CD44-201ENST00000263398 FAM102BQ5T8I3 360 aa11.77□□□□□ -0.52
CD44-201ENST00000263398 KIAA0825Q8IV33 1275 aa11.77□□□□□ -0.52
CD44-201ENST00000263398 CTAGE3PQ8IX95 158 aa11.77□□□□□ -0.52
CD44-201ENST00000263398 CCDC170Q8IYT3 715 aa11.77□□□□□ -0.52
CD44-201ENST00000263398 ATP2A3Q93084 1043 aa11.77□□□□□ -0.52
CD44-201ENST00000263398 XDHP47989 1333 aa11.77□□□□□ -0.52
CD44-201ENST00000263398 H7C1W4 665 aa11.77□□□□□ -0.52
CD44-201ENST00000263398 LMNB1P20700 586 aa11.77□□□□□ -0.52
CD44-201ENST00000263398 VPS41P49754 854 aa11.77□□□□□ -0.52
CD44-201ENST00000263398 DYNLL1P63167 89 aaKnown RBP11.77□□□□□ -0.52
CD44-201ENST00000263398 TNFAIP1Q13829 316 aa11.77□□□□□ -0.52
CD44-201ENST00000263398 ODR4Q5SWX8 454 aa11.77□□□□□ -0.52
CD44-201ENST00000263398 CASC4Q6P4E1 433 aa11.77□□□□□ -0.52
CD44-201ENST00000263398 RUNDC3BQ96NL0 473 aa11.77□□□□□ -0.52
CD44-201ENST00000263398 AIFM3Q96NN9 605 aa11.77□□□□□ -0.52
CD44-201ENST00000263398 PANX2Q96RD6 677 aa11.77□□□□□ -0.52
CD44-201ENST00000263398 SEC31BQ9NQW1 1179 aa11.77□□□□□ -0.52
CD44-201ENST00000263398 RAB20Q9NX57 234 aa11.77□□□□□ -0.52
CD44-201ENST00000263398 ERVV-1B6SEH8 477 aa11.77□□□□□ -0.53
CD44-201ENST00000263398 hCG_1984214I3L0E3 225 aa11.77□□□□□ -0.53
CD44-201ENST00000263398 COBLO75128 1261 aa11.77□□□□□ -0.53
CD44-201ENST00000263398 PRPF6O94906 941 aaKnown RBP11.77□□□□□ -0.53
CD44-201ENST00000263398 ALAS1P13196 640 aa11.77□□□□□ -0.53
CD44-201ENST00000263398 HOXA7P31268 230 aaPredicted RBP11.77□□□□□ -0.53
CD44-201ENST00000263398 PPM1FP49593 454 aaPredicted RBP11.77□□□□□ -0.53
CD44-201ENST00000263398 NT5C2P49902 561 aa11.77□□□□□ -0.53
CD44-201ENST00000263398 LIG4P49917 911 aa11.77□□□□□ -0.53
CD44-201ENST00000263398 TAF12Q16514 161 aa11.77□□□□□ -0.53
CD44-201ENST00000263398 CCDC38Q502W7 563 aa11.77□□□□□ -0.53
CD44-201ENST00000263398 USPL1Q5W0Q7 1092 aa11.77□□□□□ -0.53
CD44-201ENST00000263398 ZNF713Q8N859 430 aaPredicted RBP11.77□□□□□ -0.53
CD44-201ENST00000263398 CCDC127Q96BQ5 260 aa11.77□□□□□ -0.53
CD44-201ENST00000263398 PCDHB6Q9Y5E3 794 aa11.77□□□□□ -0.53
CD44-201ENST00000263398 WDR17Q8IZU2 1322 aa11.77□□□□□ -0.53
CD44-201ENST00000263398 ARAP3Q8WWN8 1544 aa11.77□□□□□ -0.53
CD44-201ENST00000263398 ABCA9Q8IUA7 1624 aa11.77□□□□□ -0.53
CD44-201ENST00000263398 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP11.77□□□□□ -0.53
CD44-201ENST00000263398 TMEM232C9JQI7 657 aa11.77□□□□□ -0.53
CD44-201ENST00000263398 SEC31AO94979 1220 aaKnown RBP11.77□□□□□ -0.53
CD44-201ENST00000263398 ATP1A3P13637 1013 aa11.77□□□□□ -0.53
CD44-201ENST00000263398 SCNN1DP51172 638 aa11.77□□□□□ -0.53
CD44-201ENST00000263398 NIM1KQ8IY84 436 aa11.77□□□□□ -0.53
CD44-201ENST00000263398 AFAP1L2Q8N4X5 818 aa11.77□□□□□ -0.53
CD44-201ENST00000263398 RSAD2Q8WXG1 361 aa11.77□□□□□ -0.53
CD44-201ENST00000263398 GLG1Q92896 1179 aa11.77□□□□□ -0.53
CD44-201ENST00000263398 TBC1D31Q96DN5 1066 aa11.77□□□□□ -0.53
CD44-201ENST00000263398 A2ML1A8K2U0 1454 aa11.77□□□□□ -0.53
CD44-201ENST00000263398 PHBP35232 272 aa11.76□□□□□ -0.53
CD44-201ENST00000263398 PABPC4Q13310 644 aaKnown RBP eCLIP11.76□□□□□ -0.53
CD44-201ENST00000263398 HADHQ16836 314 aaKnown RBP11.76□□□□□ -0.53
CD44-201ENST00000263398 ARL6IP4Q66PJ3 421 aaKnown RBP11.76□□□□□ -0.53
CD44-201ENST00000263398 CLEC17AQ6ZS10 378 aa11.76□□□□□ -0.53
CD44-201ENST00000263398 MCF2L2Q86YR7 1114 aa11.76□□□□□ -0.53
CD44-201ENST00000263398 PALM2Q8IXS6 379 aa11.76□□□□□ -0.53
CD44-201ENST00000263398 BBOF1Q8ND07 529 aa11.76□□□□□ -0.53
CD44-201ENST00000263398 DDX55Q8NHQ9 600 aaKnown RBP eCLIP11.76□□□□□ -0.53
CD44-201ENST00000263398 TBCKQ8TEA7 893 aa11.76□□□□□ -0.53
CD44-201ENST00000263398 KRT12Q99456 494 aa11.76□□□□□ -0.53
CD44-201ENST00000263398 ST7Q9NRC1 585 aa11.76□□□□□ -0.53
CD44-201ENST00000263398 ABCA6Q8N139 1617 aa11.76□□□□□ -0.53
CD44-201ENST00000263398 TOB2Q14106 344 aaPredicted RBP11.76□□□□□ -0.53
CD44-201ENST00000263398 ADAT2Q7Z6V5 191 aaKnown RBP11.76□□□□□ -0.53
CD44-201ENST00000263398 CCT6BQ92526 530 aa11.76□□□□□ -0.53
CD44-201ENST00000263398 JRKLQ9Y4A0 524 aa11.76□□□□□ -0.53
CD44-201ENST00000263398 PASKQ96RG2 1323 aa11.76□□□□□ -0.53
CD44-201ENST00000263398 THAP12O43422 761 aa11.76□□□□□ -0.53
CD44-201ENST00000263398 PTPN21Q16825 1174 aa11.76□□□□□ -0.53
CD44-201ENST00000263398 CCDC125Q86Z20 511 aa11.76□□□□□ -0.53
CD44-201ENST00000263398 ACRBPQ8NEB7 543 aa11.76□□□□□ -0.53
CD44-201ENST00000263398 GADD45GIP1Q8TAE8 222 aaPredicted RBP11.76□□□□□ -0.53
CD44-201ENST00000263398 NDUFA10O95299 355 aa11.76□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms