RNA–Protein interactions for RNA: ENST00000238497.9

VPS4B-201, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4B, Length 3,324 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-201ENST00000238497 ALDH8A1Q9H2A2 487 aaPredicted RBP9.87□□□□□ -0.83
VPS4B-201ENST00000238497 RNF41Q9H4P4 317 aaPredicted RBP9.87□□□□□ -0.83
VPS4B-201ENST00000238497 TMX2Q9Y320 296 aa9.87□□□□□ -0.83
VPS4B-201ENST00000238497 GTF3C2Q8WUA4 911 aaPredicted RBP9.87□□□□□ -0.83
VPS4B-201ENST00000238497 CEP95Q96GE4 821 aa9.87□□□□□ -0.83
VPS4B-201ENST00000238497 C12orf42Q96LP6 360 aa9.87□□□□□ -0.83
VPS4B-201ENST00000238497 UIMC1Q96RL1 719 aa9.87□□□□□ -0.83
VPS4B-201ENST00000238497 CNNM2Q9H8M5 875 aa9.87□□□□□ -0.83
VPS4B-201ENST00000238497 BTBD7Q9P203 1132 aa9.87□□□□□ -0.83
VPS4B-201ENST00000238497 F5H6K3 240 aa9.87□□□□□ -0.83
VPS4B-201ENST00000238497 ZNF202O95125 648 aa9.87□□□□□ -0.83
VPS4B-201ENST00000238497 GOLGA8HP0CJ92 632 aa9.87□□□□□ -0.83
VPS4B-201ENST00000238497 SYKP43405 635 aa9.87□□□□□ -0.83
VPS4B-201ENST00000238497 KLRC3Q07444 240 aa9.87□□□□□ -0.83
VPS4B-201ENST00000238497 TRIM32Q13049 653 aa9.87□□□□□ -0.83
VPS4B-201ENST00000238497 KLHL10Q6JEL2 608 aa9.87□□□□□ -0.83
VPS4B-201ENST00000238497 FANCBQ8NB91 859 aa9.87□□□□□ -0.83
VPS4B-201ENST00000238497 OXER1Q8TDS5 423 aa9.87□□□□□ -0.83
VPS4B-201ENST00000238497 LPAR1Q92633 364 aa9.87□□□□□ -0.83
VPS4B-201ENST00000238497 RCOR1Q9UKL0 485 aa9.87□□□□□ -0.83
VPS4B-201ENST00000238497 ZMYM6O95789 1325 aa9.86□□□□□ -0.83
VPS4B-201ENST00000238497 FAM205CA6NFA0 338 aa9.86□□□□□ -0.83
VPS4B-201ENST00000238497 GOLGA6L6A8MZA4 724 aa9.86□□□□□ -0.83
VPS4B-201ENST00000238497 TULP1O00294 542 aaPredicted RBP9.86□□□□□ -0.83
VPS4B-201ENST00000238497 PLEKHA8P1O95397 391 aa9.86□□□□□ -0.83
VPS4B-201ENST00000238497 AFMP43652 599 aa9.86□□□□□ -0.83
VPS4B-201ENST00000238497 RGS19P49795 217 aa9.86□□□□□ -0.83
VPS4B-201ENST00000238497 FAM160A1Q05DH4 1040 aa9.86□□□□□ -0.83
VPS4B-201ENST00000238497 LINC00301Q8NCQ3 95 aa9.86□□□□□ -0.83
VPS4B-201ENST00000238497 MORF4L1Q9UBU8 362 aa9.86□□□□□ -0.83
VPS4B-201ENST00000238497 NOL7Q9UMY1 257 aaKnown RBP9.86□□□□□ -0.83
VPS4B-201ENST00000238497 ZSWIM8A7E2V4 1837 aa9.86□□□□□ -0.83
VPS4B-201ENST00000238497 WDR46O15213 610 aaKnown RBP9.86□□□□□ -0.83
VPS4B-201ENST00000238497 PDIA4P13667 645 aaKnown RBP9.86□□□□□ -0.83
VPS4B-201ENST00000238497 RGS2P41220 211 aa9.86□□□□□ -0.83
VPS4B-201ENST00000238497 ZNF174Q15697 407 aa9.86□□□□□ -0.83
VPS4B-201ENST00000238497 CCDC96Q2M329 555 aa9.86□□□□□ -0.83
VPS4B-201ENST00000238497 SIAH1Q8IUQ4 282 aa9.86□□□□□ -0.83
VPS4B-201ENST00000238497 U2AF1L4Q8WU68 220 aaKnown RBP9.86□□□□□ -0.83
VPS4B-201ENST00000238497 TRMT1Q9NXH9 659 aaKnown RBP9.86□□□□□ -0.83
VPS4B-201ENST00000238497 NDUFB10O96000 172 aa9.85□□□□□ -0.83
VPS4B-201ENST00000238497 ERCC3P19447 782 aa9.85□□□□□ -0.83
VPS4B-201ENST00000238497 CCL14Q16627 93 aa9.85□□□□□ -0.83
VPS4B-201ENST00000238497 GRAMD1CQ8IYS0 662 aa9.85□□□□□ -0.83
VPS4B-201ENST00000238497 CNNM3Q8NE01 707 aa9.85□□□□□ -0.83
VPS4B-201ENST00000238497 CTCFLQ8NI51 663 aaPredicted RBP9.85□□□□□ -0.83
VPS4B-201ENST00000238497 SPATC1LQ9H0A9 340 aa9.85□□□□□ -0.83
VPS4B-201ENST00000238497 HMX1Q9NP08 348 aaPredicted RBP9.85□□□□□ -0.83
VPS4B-201ENST00000238497 COBLO75128 1261 aa9.85□□□□□ -0.83
VPS4B-201ENST00000238497 TTLL1O95922 423 aa9.85□□□□□ -0.83
VPS4B-201ENST00000238497 HMGCRP04035 888 aa9.85□□□□□ -0.83
VPS4B-201ENST00000238497 PRKAR2AP13861 404 aaKnown RBP9.85□□□□□ -0.83
VPS4B-201ENST00000238497 NLRP5P59047 1200 aa9.85□□□□□ -0.83
VPS4B-201ENST00000238497 PNOCQ13519 176 aa9.85□□□□□ -0.83
VPS4B-201ENST00000238497 ARID5BQ14865 1188 aa9.85□□□□□ -0.83
VPS4B-201ENST00000238497 SLFN13Q68D06 897 aa9.85□□□□□ -0.83
VPS4B-201ENST00000238497 CEP57L1Q8IYX8 460 aa9.85□□□□□ -0.83
VPS4B-201ENST00000238497 SOCS4Q8WXH5 440 aa9.85□□□□□ -0.83
VPS4B-201ENST00000238497 PLIN2Q99541 437 aa9.85□□□□□ -0.83
VPS4B-201ENST00000238497 MOV10L1Q9BXT6 1211 aaKnown RBP9.85□□□□□ -0.83
VPS4B-201ENST00000238497 HOMER2Q9NSB8 354 aa9.85□□□□□ -0.83
VPS4B-201ENST00000238497 PFKFB1P16118 471 aa9.85□□□□□ -0.83
VPS4B-201ENST00000238497 DSG3P32926 999 aa9.85□□□□□ -0.83
VPS4B-201ENST00000238497 SLC1A4P43007 532 aa9.85□□□□□ -0.83
VPS4B-201ENST00000238497 KCNG4Q8TDN1 519 aa9.85□□□□□ -0.83
VPS4B-201ENST00000238497 NAV1Q8NEY1 1877 aa9.85□□□□□ -0.83
VPS4B-201ENST00000238497 ELP1O95163 1332 aa9.84□□□□□ -0.83
VPS4B-201ENST00000238497 GJB1P08034 283 aa9.84□□□□□ -0.83
VPS4B-201ENST00000238497 CDK11BP21127 795 aaKnown RBP9.84□□□□□ -0.83
VPS4B-201ENST00000238497 CDC25AP30304 524 aa9.84□□□□□ -0.83
VPS4B-201ENST00000238497 DPCR1Q3MIW9 517 aa9.84□□□□□ -0.83
VPS4B-201ENST00000238497 RASGRP4Q8TDF6 673 aa9.84□□□□□ -0.83
VPS4B-201ENST00000238497 TRIB2Q92519 343 aa9.84□□□□□ -0.83
VPS4B-201ENST00000238497 PDLIM2Q96JY6 352 aa9.84□□□□□ -0.83
VPS4B-201ENST00000238497 CDK5RAP2Q96SN8 1893 aa9.84□□□□□ -0.83
VPS4B-201ENST00000238497 ZSCAN10Q96SZ4 725 aaPredicted RBP9.84□□□□□ -0.83
VPS4B-201ENST00000238497 GNL3Q9BVP2 549 aaKnown RBP eCLIP9.84□□□□□ -0.83
VPS4B-201ENST00000238497 AGXT2Q9BYV1 514 aa9.84□□□□□ -0.83
VPS4B-201ENST00000238497 SIPA1L1O43166 1804 aa9.84□□□□□ -0.83
VPS4B-201ENST00000238497 CCDC196A0A1B0GTZ2 297 aa9.84□□□□□ -0.83
VPS4B-201ENST00000238497 TMEM232C9JQI7 657 aa9.84□□□□□ -0.83
VPS4B-201ENST00000238497 FARP2O94887 1054 aaPredicted RBP9.84□□□□□ -0.83
VPS4B-201ENST00000238497 XBP1P17861 261 aa9.84□□□□□ -0.83
VPS4B-201ENST00000238497 CASP1P29466 404 aa9.84□□□□□ -0.83
VPS4B-201ENST00000238497 STAT3P40763 770 aa9.84□□□□□ -0.83
VPS4B-201ENST00000238497 GRIN1Q05586 938 aa9.84□□□□□ -0.83
VPS4B-201ENST00000238497 DHX8Q14562 1220 aaKnown RBP9.84□□□□□ -0.83
VPS4B-201ENST00000238497 STX1AQ16623 288 aa9.84□□□□□ -0.83
VPS4B-201ENST00000238497 UVSSAQ2YD98 709 aa9.84□□□□□ -0.83
VPS4B-201ENST00000238497 ADALQ6DHV7 355 aa9.84□□□□□ -0.83
VPS4B-201ENST00000238497 LBX2Q6XYB7 198 aa9.84□□□□□ -0.83
VPS4B-201ENST00000238497 ENAHQ8N8S7 591 aaPredicted RBP9.84□□□□□ -0.83
VPS4B-201ENST00000238497 PXYLP1Q8TE99 480 aa9.84□□□□□ -0.83
VPS4B-201ENST00000238497 GPKOWQ92917 476 aaPredicted RBP eCLIP9.84□□□□□ -0.83
VPS4B-201ENST00000238497 C16orf45Q96MC5 204 aaPredicted RBP9.84□□□□□ -0.83
VPS4B-201ENST00000238497 XRN2Q9H0D6 950 aaKnown RBP eCLIP9.84□□□□□ -0.83
VPS4B-201ENST00000238497 ANO10Q9NW15 660 aa9.84□□□□□ -0.83
VPS4B-201ENST00000238497 MTMR4Q9NYA4 1195 aa9.84□□□□□ -0.83
VPS4B-201ENST00000238497 GJD2Q9UKL4 321 aa9.84□□□□□ -0.83
VPS4B-201ENST00000238497 PYCARDQ9ULZ3 195 aa9.84□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 57.4 ms