RNA–Protein interactions for RNA: YDR394W

RPT3, Transcript of ATPase of the 19S regulatory particle of the 26S proteasome, yeast

Gene RPT3, Length 1,287 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RPT3	YDR394W	TIM13	P53299	105 aa		5.99	□□□□□ -1.45
RPT3	YDR394W	REX2	P54964	269 aa	Known RBP	5.99	□□□□□ -1.45
RPT3	YDR394W	HER2	Q03557	464 aa		5.99	□□□□□ -1.45
RPT3	YDR394W	SPO20	Q04359	397 aa		5.99	□□□□□ -1.45
RPT3	YDR394W	DAL4	Q04895	635 aa		5.99	□□□□□ -1.45
RPT3	YDR394W	SPC2	Q04969	178 aa		5.99	□□□□□ -1.45
RPT3	YDR394W	ECM30	Q06673	1274 aa		5.99	□□□□□ -1.45
RPT3	YDR394W	ASA1	Q06822	443 aa		5.99	□□□□□ -1.45
RPT3	YDR394W	YEH2	Q07950	538 aa		5.99	□□□□□ -1.45
RPT3	YDR394W	ESA1	Q08649	445 aa		5.99	□□□□□ -1.45
RPT3	YDR394W	NUS1	Q12063	375 aa		5.99	□□□□□ -1.45
RPT3	YDR394W	AHA1	Q12449	350 aa	Known RBP	5.99	□□□□□ -1.45
RPT3	YDR394W	YPL247C	Q12523	523 aa		5.99	□□□□□ -1.45
RPT3	YDR394W	SAS5	Q99314	248 aa		5.99	□□□□□ -1.45
RPT3	YDR394W	RPS4A	P0CX35	261 aa	Known RBP	5.98	□□□□□ -1.45
RPT3	YDR394W	RPS4B	P0CX36	261 aa	Known RBP	5.98	□□□□□ -1.45
RPT3	YDR394W	TAL1	P15019	335 aa	Known RBP	5.98	□□□□□ -1.45
RPT3	YDR394W	MIH1	P23748	554 aa		5.98	□□□□□ -1.45
RPT3	YDR394W	EMC1	P25574	760 aa		5.98	□□□□□ -1.45
RPT3	YDR394W	CCR4	P31384	837 aa	Known RBP	5.98	□□□□□ -1.45
RPT3	YDR394W	DPH5	P32469	300 aa	Predicted RBP	5.98	□□□□□ -1.45
RPT3	YDR394W	PTH2	P34222	208 aa		5.98	□□□□□ -1.45
RPT3	YDR394W	SKT5	P34226	696 aa		5.98	□□□□□ -1.45
RPT3	YDR394W	YKL077W	P36081	392 aa		5.98	□□□□□ -1.45
RPT3	YDR394W	YHR131C	P38835	850 aa		5.98	□□□□□ -1.45
RPT3	YDR394W	UTP9	P38882	575 aa	Known RBP	5.98	□□□□□ -1.45
RPT3	YDR394W	YEN1	P40028	759 aa		5.98	□□□□□ -1.45
RPT3	YDR394W	MMF1	P40185	145 aa	Known RBP	5.98	□□□□□ -1.45
RPT3	YDR394W	UFE1	P41834	346 aa		5.98	□□□□□ -1.45
RPT3	YDR394W	YGL108C	P53139	140 aa		5.98	□□□□□ -1.45
RPT3	YDR394W	TRM112	P53738	135 aa	Predicted RBP	5.98	□□□□□ -1.45
RPT3	YDR394W	YNR063W	P53749	607 aa		5.98	□□□□□ -1.45
RPT3	YDR394W	ELA1	P53861	379 aa	Predicted RBP	5.98	□□□□□ -1.45
RPT3	YDR394W	IBD2	P53892	351 aa		5.98	□□□□□ -1.45
RPT3	YDR394W	YML131W	Q03102	365 aa		5.98	□□□□□ -1.45
RPT3	YDR394W	EAR1	Q03212	550 aa		5.98	□□□□□ -1.45
RPT3	YDR394W	MMT1	Q03218	510 aa		5.98	□□□□□ -1.45
RPT3	YDR394W	HSP31	Q04432	237 aa		5.98	□□□□□ -1.45
RPT3	YDR394W	GSF2	Q04697	403 aa	Known RBP	5.98	□□□□□ -1.45
RPT3	YDR394W	MCP2	Q06567	569 aa		5.98	□□□□□ -1.45
RPT3	YDR394W	MUM3	Q08750	479 aa		5.98	□□□□□ -1.45
RPT3	YDR394W	UBX3	Q12229	455 aa		5.98	□□□□□ -1.45
RPT3	YDR394W	NDJ1	Q12366	352 aa		5.98	□□□□□ -1.45
RPT3	YDR394W	LPX1	Q12405	387 aa	Known RBP	5.98	□□□□□ -1.45
RPT3	YDR394W	TPK2	P06245	380 aa		5.97	□□□□□ -1.45
RPT3	YDR394W	SPE1	P08432	466 aa		5.97	□□□□□ -1.45
RPT3	YDR394W	TUB1	P09733	447 aa	Known RBP	5.97	□□□□□ -1.45
RPT3	YDR394W	CLB3	P24870	427 aa		5.97	□□□□□ -1.45
RPT3	YDR394W	YCR099C	P25657	155 aa		5.97	□□□□□ -1.45
RPT3	YDR394W	BUB2	P26448	306 aa	Predicted RBP	5.97	□□□□□ -1.45
RPT3	YDR394W	ZUO1	P32527	433 aa	Known RBP	5.97	□□□□□ -1.45
RPT3	YDR394W	SGE1	P33335	543 aa		5.97	□□□□□ -1.45
RPT3	YDR394W	FRE2	P36033	711 aa		5.97	□□□□□ -1.45
RPT3	YDR394W	MRPL40	P36534	297 aa		5.97	□□□□□ -1.45
RPT3	YDR394W	POL12	P38121	705 aa	Predicted RBP	5.97	□□□□□ -1.45
RPT3	YDR394W	KTR4	P38131	464 aa		5.97	□□□□□ -1.45
RPT3	YDR394W	LDB7	P38210	180 aa		5.97	□□□□□ -1.45
RPT3	YDR394W	RFS1	P38234	210 aa	Known RBP	5.97	□□□□□ -1.45
RPT3	YDR394W	FTH1	P38310	465 aa		5.97	□□□□□ -1.45
RPT3	YDR394W	TDA11	P38854	504 aa		5.97	□□□□□ -1.45
RPT3	YDR394W	MEP1	P40260	492 aa		5.97	□□□□□ -1.45
RPT3	YDR394W	HPM1	P40481	377 aa		5.97	□□□□□ -1.45
RPT3	YDR394W	IMA5	P40884	581 aa		5.97	□□□□□ -1.45
RPT3	YDR394W	YFL040W	P43562	540 aa		5.97	□□□□□ -1.45
RPT3	YDR394W	MTR3	P48240	250 aa	Predicted RBP	5.97	□□□□□ -1.45
RPT3	YDR394W	DIA3	P52290	468 aa		5.97	□□□□□ -1.45
RPT3	YDR394W	SAP4	P53036	818 aa		5.97	□□□□□ -1.45
RPT3	YDR394W	GET1	P53192	235 aa		5.97	□□□□□ -1.45
RPT3	YDR394W	GAS3	Q03655	524 aa		5.97	□□□□□ -1.45
RPT3	YDR394W	TRE2	Q08693	809 aa		5.97	□□□□□ -1.45
RPT3	YDR394W	UAF30	Q08747	228 aa		5.97	□□□□□ -1.45
RPT3	YDR394W	GET4	Q12125	312 aa		5.97	□□□□□ -1.45
RPT3	YDR394W	SEC53	P07283	254 aa	Known RBP	5.96	□□□□□ -1.46
RPT3	YDR394W	MSS18	P08593	268 aa		5.96	□□□□□ -1.46
RPT3	YDR394W	SCH9	P11792	824 aa	Known RBP	5.96	□□□□□ -1.46
RPT3	YDR394W	MTF1	P14908	341 aa	Known RBP	5.96	□□□□□ -1.46
RPT3	YDR394W	AMD1	P15274	810 aa	Known RBP	5.96	□□□□□ -1.46
RPT3	YDR394W	ART10	P18634	518 aa	Known RBP	5.96	□□□□□ -1.46
RPT3	YDR394W	MRPL8	P22353	238 aa		5.96	□□□□□ -1.46
RPT3	YDR394W	ERG6	P25087	383 aa	Known RBP	5.96	□□□□□ -1.46
RPT3	YDR394W	DCC1	P25559	380 aa		5.96	□□□□□ -1.46
RPT3	YDR394W	PTM1	P32857	523 aa		5.96	□□□□□ -1.46
RPT3	YDR394W	CBF5	P33322	483 aa	Known RBP RIP-Chip data	5.96	□□□□□ -1.46	not detected
RPT3	YDR394W	PTC1	P35182	281 aa		5.96	□□□□□ -1.46
RPT3	YDR394W	GCS1	P35197	352 aa		5.96	□□□□□ -1.46
RPT3	YDR394W	PDX3	P38075	228 aa	Known RBP	5.96	□□□□□ -1.46
RPT3	YDR394W	IST2	P38250	946 aa		5.96	□□□□□ -1.46
RPT3	YDR394W	YHR045W	P38775	560 aa		5.96	□□□□□ -1.46
RPT3	YDR394W	CYC2	P38909	366 aa		5.96	□□□□□ -1.46
RPT3	YDR394W	PDS1	P40316	373 aa	Predicted RBP	5.96	□□□□□ -1.46
RPT3	YDR394W	ALG8	P40351	577 aa		5.96	□□□□□ -1.46
RPT3	YDR394W	SNL1	P40548	159 aa		5.96	□□□□□ -1.46
RPT3	YDR394W	OYE3	P41816	400 aa	Predicted RBP	5.96	□□□□□ -1.46
RPT3	YDR394W	NOP9	P47077	666 aa	Known RBP	5.96	□□□□□ -1.46
RPT3	YDR394W	NAS6	P50086	228 aa		5.96	□□□□□ -1.46
RPT3	YDR394W	IPI3	P53877	555 aa		5.96	□□□□□ -1.46
RPT3	YDR394W	PRP38	Q00723	242 aa	Predicted RBP	5.96	□□□□□ -1.46
RPT3	YDR394W	NAN1	Q02931	896 aa	Known RBP	5.96	□□□□□ -1.46
RPT3	YDR394W	YKU80	Q04437	629 aa		5.96	□□□□□ -1.46
RPT3	YDR394W	RTN1	Q04947	295 aa	Known RBP	5.96	□□□□□ -1.46

Retrieved 100 of 5,963 RNA–protein pairs in 22.8 ms