RNA–Protein interactions for RNA: ENST00000641603.1

SCN1A-220, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

BASIC

Gene SCN1A, Length 12,506 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-220ENST00000641603 PZPP20742 1482 aa5.09□□□□□ -1.6
SCN1A-220ENST00000641603 TBKBP1A7MCY6 615 aa5.09□□□□□ -1.6
SCN1A-220ENST00000641603 PPIP5K2O43314 1243 aa5.09□□□□□ -1.6
SCN1A-220ENST00000641603 C21orf2O43822 256 aa5.09□□□□□ -1.6
SCN1A-220ENST00000641603 CCDC22O60826 627 aa5.09□□□□□ -1.6
SCN1A-220ENST00000641603 PCP11498 1178 aaKnown RBP5.09□□□□□ -1.6
SCN1A-220ENST00000641603 EEF1DP29692 281 aaKnown RBP5.09□□□□□ -1.6
SCN1A-220ENST00000641603 PDXDC1Q6P996 788 aa5.09□□□□□ -1.6
SCN1A-220ENST00000641603 CDC37L1Q7L3B6 337 aa5.09□□□□□ -1.6
SCN1A-220ENST00000641603 LRRC37BQ96QE4 947 aa5.09□□□□□ -1.6
SCN1A-220ENST00000641603 ANGPTL3Q9Y5C1 460 aa5.09□□□□□ -1.6
SCN1A-220ENST00000641603 TTC37Q6PGP7 1564 aa5.09□□□□□ -1.6
SCN1A-220ENST00000641603 TATP17735 454 aaPredicted RBP5.09□□□□□ -1.6
SCN1A-220ENST00000641603 HSPA1LP34931 641 aa5.09□□□□□ -1.6
SCN1A-220ENST00000641603 IRAK1P51617 712 aa5.09□□□□□ -1.6
SCN1A-220ENST00000641603 CUL4BQ13620 913 aa5.09□□□□□ -1.6
SCN1A-220ENST00000641603 FAM81AQ8TBF8 368 aa5.09□□□□□ -1.6
SCN1A-220ENST00000641603 PAG1Q9NWQ8 432 aa5.09□□□□□ -1.6
SCN1A-220ENST00000641603 ORC6Q9Y5N6 252 aa5.09□□□□□ -1.6
SCN1A-220ENST00000641603 MAP3K15Q6ZN16 1313 aa5.08□□□□□ -1.6
SCN1A-220ENST00000641603 MORC3Q14149 939 aa5.08□□□□□ -1.6
SCN1A-220ENST00000641603 FSCBQ5H9T9 825 aa5.08□□□□□ -1.6
SCN1A-220ENST00000641603 B4GALNT2Q8NHY0 566 aa5.08□□□□□ -1.6
SCN1A-220ENST00000641603 NELFBQ8WX92 580 aa5.08□□□□□ -1.6
SCN1A-220ENST00000641603 CARD10Q9BWT7 1032 aa5.08□□□□□ -1.6
SCN1A-220ENST00000641603 LRP2BPQ9P2M1 347 aa5.08□□□□□ -1.6
SCN1A-220ENST00000641603 FHOD1Q9Y613 1164 aa5.08□□□□□ -1.6
SCN1A-220ENST00000641603 ADGBQ8N7X0 1667 aa5.08□□□□□ -1.6
SCN1A-220ENST00000641603 ABCC12Q96J65 1359 aa5.08□□□□□ -1.6
SCN1A-220ENST00000641603 IDH1O75874 414 aaKnown RBP5.08□□□□□ -1.6
SCN1A-220ENST00000641603 KRT75O95678 551 aa5.08□□□□□ -1.6
SCN1A-220ENST00000641603 MARCKSP29966 332 aaPredicted RBP5.08□□□□□ -1.6
SCN1A-220ENST00000641603 ORC2Q13416 577 aaPredicted RBP5.08□□□□□ -1.6
SCN1A-220ENST00000641603 SYDE1Q6ZW31 735 aaPredicted RBP5.08□□□□□ -1.6
SCN1A-220ENST00000641603 ZNF710Q8N1W2 664 aa5.08□□□□□ -1.6
SCN1A-220ENST00000641603 RIBC1Q8N443 379 aaPredicted RBP5.08□□□□□ -1.6
SCN1A-220ENST00000641603 MIEF2Q96C03 454 aa5.08□□□□□ -1.6
SCN1A-220ENST00000641603 NUDCD1Q96RS6 583 aa5.08□□□□□ -1.6
SCN1A-220ENST00000641603 CCT8L2Q96SF2 557 aa5.08□□□□□ -1.6
SCN1A-220ENST00000641603 LARP6Q9BRS8 491 aaKnown RBP5.08□□□□□ -1.6
SCN1A-220ENST00000641603 FAM187AA6NFU0 413 aa5.08□□□□□ -1.6
SCN1A-220ENST00000641603 NR1I2O75469 434 aa5.08□□□□□ -1.6
SCN1A-220ENST00000641603 H2AFZP0C0S5 128 aa5.08□□□□□ -1.6
SCN1A-220ENST00000641603 MCF2P10911 925 aa5.08□□□□□ -1.6
SCN1A-220ENST00000641603 ABCD1P33897 745 aa5.08□□□□□ -1.6
SCN1A-220ENST00000641603 LONP1P36776 959 aaKnown RBP5.08□□□□□ -1.6
SCN1A-220ENST00000641603 CDR2Q01850 454 aa5.08□□□□□ -1.6
SCN1A-220ENST00000641603 SCRN1Q12765 414 aa5.08□□□□□ -1.6
SCN1A-220ENST00000641603 RASGRF1Q13972 1273 aa5.08□□□□□ -1.6
SCN1A-220ENST00000641603 HAUS3Q68CZ6 603 aa5.08□□□□□ -1.6
SCN1A-220ENST00000641603 H2AFVQ71UI9 128 aa5.08□□□□□ -1.6
SCN1A-220ENST00000641603 CCDC25Q86WR0 208 aa5.08□□□□□ -1.6
SCN1A-220ENST00000641603 ANKLE2Q86XL3 938 aa5.08□□□□□ -1.6
SCN1A-220ENST00000641603 DNAJC9Q8WXX5 260 aa5.08□□□□□ -1.6
SCN1A-220ENST00000641603 ZFRQ96KR1 1074 aaKnown RBP5.08□□□□□ -1.6
SCN1A-220ENST00000641603 UPF3AQ9H1J1 476 aaKnown RBP5.08□□□□□ -1.6
SCN1A-220ENST00000641603 KAT14Q9H8E8 782 aa5.08□□□□□ -1.6
SCN1A-220ENST00000641603 LRCH1Q9Y2L9 728 aa5.08□□□□□ -1.6
SCN1A-220ENST00000641603 CFAP74Q9C0B2 1584 aa5.08□□□□□ -1.6
SCN1A-220ENST00000641603 C4BPBP20851 252 aa5.08□□□□□ -1.6
SCN1A-220ENST00000641603 PLCB3Q01970 1234 aa5.08□□□□□ -1.6
SCN1A-220ENST00000641603 NOSTRINQ8IVI9 506 aa5.08□□□□□ -1.6
SCN1A-220ENST00000641603 PAWRQ96IZ0 340 aaKnown RBP5.08□□□□□ -1.6
SCN1A-220ENST00000641603 PABPN1LA6NDY0 278 aaKnown RBP5.08□□□□□ -1.6
SCN1A-220ENST00000641603 CBFA2T3O75081 653 aa5.08□□□□□ -1.6
SCN1A-220ENST00000641603 ESRRAP11474 423 aaPredicted RBP5.08□□□□□ -1.6
SCN1A-220ENST00000641603 SERPINB6P35237 376 aa5.08□□□□□ -1.6
SCN1A-220ENST00000641603 COPB1P53618 953 aaKnown RBP5.08□□□□□ -1.6
SCN1A-220ENST00000641603 NUP107P57740 925 aa5.08□□□□□ -1.6
SCN1A-220ENST00000641603 IFIT5Q13325 482 aaKnown RBP5.08□□□□□ -1.6
SCN1A-220ENST00000641603 SPARCL1Q14515 664 aa5.08□□□□□ -1.6
SCN1A-220ENST00000641603 TRIM60Q495X7 471 aa5.08□□□□□ -1.6
SCN1A-220ENST00000641603 RARS2Q5T160 578 aaKnown RBP5.08□□□□□ -1.6
SCN1A-220ENST00000641603 BZW1Q7L1Q6 419 aaKnown RBP5.08□□□□□ -1.6
SCN1A-220ENST00000641603 CDK19Q9BWU1 502 aa5.08□□□□□ -1.6
SCN1A-220ENST00000641603 SLC40A1Q9NP59 571 aa5.08□□□□□ -1.6
SCN1A-220ENST00000641603 AP4S1Q9Y587 144 aa5.08□□□□□ -1.6
SCN1A-220ENST00000641603 COMMD3-BMI1R4GMX3 469 aa5.08□□□□□ -1.6
SCN1A-220ENST00000641603 TTKP33981 857 aa5.08□□□□□ -1.6
SCN1A-220ENST00000641603 GGCXP38435 758 aa5.08□□□□□ -1.6
SCN1A-220ENST00000641603 KPNA2P52292 529 aaKnown RBP5.08□□□□□ -1.6
SCN1A-220ENST00000641603 LRGUKQ96M69 825 aa5.08□□□□□ -1.6
SCN1A-220ENST00000641603 INTUQ9ULD6 942 aa5.08□□□□□ -1.6
SCN1A-220ENST00000641603 hCG_1984214I3L0E3 225 aa5.08□□□□□ -1.6
SCN1A-220ENST00000641603 VHLP40337 213 aa5.08□□□□□ -1.6
SCN1A-220ENST00000641603 GUCY1B3Q02153 619 aa5.08□□□□□ -1.6
SCN1A-220ENST00000641603 ZNF713Q8N859 430 aaPredicted RBP5.08□□□□□ -1.6
SCN1A-220ENST00000641603 USP33Q8TEY7 942 aa5.08□□□□□ -1.6
SCN1A-220ENST00000641603 DIAPH2O60879 1101 aa5.08□□□□□ -1.6
SCN1A-220ENST00000641603 GFPT2O94808 682 aa5.08□□□□□ -1.6
SCN1A-220ENST00000641603 MCM7P33993 719 aa5.08□□□□□ -1.6
SCN1A-220ENST00000641603 AARSP49588 968 aaKnown RBP eCLIP5.08□□□□□ -1.6
SCN1A-220ENST00000641603 DEFA1P59665 94 aa5.08□□□□□ -1.6
SCN1A-220ENST00000641603 DEFA3P59666 94 aa5.08□□□□□ -1.6
SCN1A-220ENST00000641603 MED21Q13503 144 aa5.08□□□□□ -1.6
SCN1A-220ENST00000641603 CYB5D1Q6P9G0 228 aa5.08□□□□□ -1.6
SCN1A-220ENST00000641603 SYT2Q8N9I0 419 aaPredicted RBP5.08□□□□□ -1.6
SCN1A-220ENST00000641603 TRPC4APQ8TEL6 797 aa5.08□□□□□ -1.6
SCN1A-220ENST00000641603 TEKT4Q8WW24 435 aa5.08□□□□□ -1.6
SCN1A-220ENST00000641603 CRNKL1Q9BZJ0 848 aaKnown RBP5.08□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms