RNA–Protein interactions for RNA: ENST00000637871.1

CLN3-263, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,606 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-263ENST00000637871 NCAPHQ15003 741 aa20.83■□□□□ 0.93
CLN3-263ENST00000637871 DCAF15Q66K64 600 aa20.83■□□□□ 0.93
CLN3-263ENST00000637871 ERCC4Q92889 916 aaPredicted RBP20.83■□□□□ 0.93
CLN3-263ENST00000637871 ZKSCAN4Q969J2 545 aaPredicted RBP20.83■□□□□ 0.93
CLN3-263ENST00000637871 GSDMAQ96QA5 445 aa20.83■□□□□ 0.93
CLN3-263ENST00000637871 RIOX1Q9H6W3 641 aa20.83■□□□□ 0.93
CLN3-263ENST00000637871 ATAD5Q96QE3 1844 aa20.83■□□□□ 0.93
CLN3-263ENST00000637871 PPP1R12BO60237 982 aaPredicted RBP20.82■□□□□ 0.92
CLN3-263ENST00000637871 GDF11O95390 407 aa20.82■□□□□ 0.92
CLN3-263ENST00000637871 TTLL1O95922 423 aa20.82■□□□□ 0.92
CLN3-263ENST00000637871 ERCC5P28715 1186 aaPredicted RBP20.82■□□□□ 0.92
CLN3-263ENST00000637871 PRPHP41219 470 aa20.82■□□□□ 0.92
CLN3-263ENST00000637871 SH3RF1Q7Z6J0 888 aa20.82■□□□□ 0.92
CLN3-263ENST00000637871 CLMNQ96JQ2 1002 aa20.82■□□□□ 0.92
CLN3-263ENST00000637871 NAP1L5Q96NT1 182 aaPredicted RBP20.82■□□□□ 0.92
CLN3-263ENST00000637871 ZNF341Q9BYN7 854 aa20.82■□□□□ 0.92
CLN3-263ENST00000637871 PHF20L1A8MW92 1017 aa20.82■□□□□ 0.92
CLN3-263ENST00000637871 CYTH3O43739 400 aa20.82■□□□□ 0.92
CLN3-263ENST00000637871 NRDCO43847 1150 aa20.82■□□□□ 0.92
CLN3-263ENST00000637871 SNHG28P0DPA3 235 aa20.82■□□□□ 0.92
CLN3-263ENST00000637871 PTGS1P23219 599 aa20.82■□□□□ 0.92
CLN3-263ENST00000637871 JAG1P78504 1218 aa20.82■□□□□ 0.92
CLN3-263ENST00000637871 GRIN1Q05586 938 aa20.82■□□□□ 0.92
CLN3-263ENST00000637871 MORC3Q14149 939 aa20.82■□□□□ 0.92
CLN3-263ENST00000637871 WWC2Q6AWC2 1192 aa20.82■□□□□ 0.92
CLN3-263ENST00000637871 FOXP4Q8IVH2 680 aaPredicted RBP20.82■□□□□ 0.92
CLN3-263ENST00000637871 ENOX1Q8TC92 643 aaKnown RBP20.82■□□□□ 0.92
CLN3-263ENST00000637871 KLRG1Q96E93 195 aa20.82■□□□□ 0.92
CLN3-263ENST00000637871 ZNF830Q96NB3 372 aaPredicted RBP20.82■□□□□ 0.92
CLN3-263ENST00000637871 KCNF1Q9H3M0 494 aa20.82■□□□□ 0.92
CLN3-263ENST00000637871 HERC5Q9UII4 1024 aaKnown RBP20.82■□□□□ 0.92
CLN3-263ENST00000637871 MAN1B1Q9UKM7 699 aa20.82■□□□□ 0.92
CLN3-263ENST00000637871 FAM205CA6NFA0 338 aa20.81■□□□□ 0.92
CLN3-263ENST00000637871 MAP3K10Q02779 954 aa20.81■□□□□ 0.92
CLN3-263ENST00000637871 DOCK1Q14185 1865 aa20.81■□□□□ 0.92
CLN3-263ENST00000637871 HEATR3Q7Z4Q2 680 aa20.81■□□□□ 0.92
CLN3-263ENST00000637871 C2orf69Q8N8R5 385 aa20.81■□□□□ 0.92
CLN3-263ENST00000637871 DDX55Q8NHQ9 600 aaKnown RBP eCLIP20.81■□□□□ 0.92
CLN3-263ENST00000637871 SYMPKQ92797 1274 aaKnown RBP20.81■□□□□ 0.92
CLN3-263ENST00000637871 HOOK2Q96ED9 719 aa20.81■□□□□ 0.92
CLN3-263ENST00000637871 PCDHA6Q9UN73 950 aa20.81■□□□□ 0.92
CLN3-263ENST00000637871 PCDHA8Q9Y5H6 950 aa20.81■□□□□ 0.92
CLN3-263ENST00000637871 TMEM88BA6NKF7 163 aa20.8■□□□□ 0.92
CLN3-263ENST00000637871 TBC1D12O60347 775 aa20.8■□□□□ 0.92
CLN3-263ENST00000637871 SPECC1Q5M775 1068 aa20.8■□□□□ 0.92
CLN3-263ENST00000637871 GPATCH4Q5T3I0 446 aaKnown RBP20.8■□□□□ 0.92
CLN3-263ENST00000637871 PPP1R18Q6NYC8 613 aa20.8■□□□□ 0.92
CLN3-263ENST00000637871 PPP1R3FQ6ZSY5 799 aaPredicted RBP20.8■□□□□ 0.92
CLN3-263ENST00000637871 ARMC9Q7Z3E5 817 aa20.8■□□□□ 0.92
CLN3-263ENST00000637871 CCDC84Q86UT8 332 aaPredicted RBP20.8■□□□□ 0.92
CLN3-263ENST00000637871 ABT1Q9ULW3 272 aaKnown RBP20.8■□□□□ 0.92
CLN3-263ENST00000637871 MYL1P05976 194 aa20.79■□□□□ 0.92
CLN3-263ENST00000637871 PDHBP11177 359 aa20.79■□□□□ 0.92
CLN3-263ENST00000637871 IREB2P48200 963 aaKnown RBP20.79■□□□□ 0.92
CLN3-263ENST00000637871 APLP1P51693 650 aa20.79■□□□□ 0.92
CLN3-263ENST00000637871 HUNKP57058 714 aa20.79■□□□□ 0.92
CLN3-263ENST00000637871 C1QTNF8P60827 252 aa20.79■□□□□ 0.92
CLN3-263ENST00000637871 VGLL4Q14135 290 aa20.79■□□□□ 0.92
CLN3-263ENST00000637871 VWA3AA6NCI4 1184 aa20.78■□□□□ 0.92
CLN3-263ENST00000637871 NAPAP54920 295 aa20.78■□□□□ 0.92
CLN3-263ENST00000637871 DTHD1Q6ZMT9 781 aa20.78■□□□□ 0.92
CLN3-263ENST00000637871 LRRC8AQ8IWT6 810 aa20.78■□□□□ 0.92
CLN3-263ENST00000637871 C4orf32Q8N8J7 132 aa20.78■□□□□ 0.92
CLN3-263ENST00000637871 CCDC150Q8NCX0 1101 aa20.78■□□□□ 0.92
CLN3-263ENST00000637871 CNKSR2Q8WXI2 1034 aa20.78■□□□□ 0.92
CLN3-263ENST00000637871 GPKOWQ92917 476 aaPredicted RBP eCLIP20.78■□□□□ 0.92
CLN3-263ENST00000637871 PRIMPOLQ96LW4 560 aa20.78■□□□□ 0.92
CLN3-263ENST00000637871 AK8Q96MA6 479 aa20.78■□□□□ 0.92
CLN3-263ENST00000637871 GTPBP4Q9BZE4 634 aaKnown RBP20.78■□□□□ 0.92
CLN3-263ENST00000637871 GLT8D2Q9H1C3 349 aa20.78■□□□□ 0.92
CLN3-263ENST00000637871 ZNF112Q9UJU3 913 aa20.78■□□□□ 0.92
CLN3-263ENST00000637871 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP20.78■□□□□ 0.92
CLN3-263ENST00000637871 AKR1B1P15121 316 aa20.78■□□□□ 0.92
CLN3-263ENST00000637871 MCM7P33993 719 aa20.78■□□□□ 0.92
CLN3-263ENST00000637871 FANCCQ00597 558 aa20.78■□□□□ 0.92
CLN3-263ENST00000637871 NONOQ15233 471 aaKnown RBP eCLIP20.78■□□□□ 0.92
CLN3-263ENST00000637871 TATDN1Q6P1N9 297 aa20.78■□□□□ 0.92
CLN3-263ENST00000637871 SAPCD2Q86UD0 394 aa20.78■□□□□ 0.92
CLN3-263ENST00000637871 DHX58Q96C10 678 aa20.78■□□□□ 0.92
CLN3-263ENST00000637871 PAGE5Q96GU1 130 aa20.78■□□□□ 0.92
CLN3-263ENST00000637871 EPSTI1Q96J88 318 aa20.78■□□□□ 0.92
CLN3-263ENST00000637871 ELP3Q9H9T3 547 aa20.78■□□□□ 0.92
CLN3-263ENST00000637871 SNCAIPQ9Y6H5 919 aa20.78■□□□□ 0.92
CLN3-263ENST00000637871 MAP3K9P80192 1104 aa20.77■□□□□ 0.92
CLN3-263ENST00000637871 SLC35G1Q2M3R5 365 aa20.77■□□□□ 0.92
CLN3-263ENST00000637871 CERKLQ49MI3 558 aaPredicted RBP20.77■□□□□ 0.92
CLN3-263ENST00000637871 USP17L2Q6R6M4 530 aa20.77■□□□□ 0.92
CLN3-263ENST00000637871 CLEC10AQ8IUN9 316 aa20.77■□□□□ 0.92
CLN3-263ENST00000637871 PDILTQ8N807 584 aa20.77■□□□□ 0.92
CLN3-263ENST00000637871 CUEDC2Q9H467 287 aa20.77■□□□□ 0.92
CLN3-263ENST00000637871 MAGEF1Q9HAY2 307 aa20.77■□□□□ 0.92
CLN3-263ENST00000637871 RMND1Q9NWS8 449 aa20.77■□□□□ 0.92
CLN3-263ENST00000637871 TLL2Q9Y6L7 1015 aa20.77■□□□□ 0.92
CLN3-263ENST00000637871 SMCO2A6NFE2 343 aa20.76■□□□□ 0.91
CLN3-263ENST00000637871 MPHOSPH10O00566 681 aaKnown RBP20.76■□□□□ 0.91
CLN3-263ENST00000637871 FKBP1BP68106 108 aa20.76■□□□□ 0.91
CLN3-263ENST00000637871 DNTTIP2Q5QJE6 756 aaKnown RBP20.76■□□□□ 0.91
CLN3-263ENST00000637871 LDLRAD1Q5T700 205 aa20.76■□□□□ 0.91
CLN3-263ENST00000637871 CCSER1Q9C0I3 900 aa20.76■□□□□ 0.91
CLN3-263ENST00000637871 KCND1Q9NSA2 647 aa20.76■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 69.3 ms