RNA–Protein interactions for RNA: ENST00000637285.1

SCN1A-215, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 100 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-215ENST00000637285 SMARCA5O60264 1052 aaPredicted RBP2.88□□□□□ -1.95
SCN1A-215ENST00000637285 PF4P02776 101 aa2.88□□□□□ -1.95
SCN1A-215ENST00000637285 P4HBP07237 508 aaKnown RBP2.88□□□□□ -1.95
SCN1A-215ENST00000637285 PMLP29590 882 aa2.88□□□□□ -1.95
SCN1A-215ENST00000637285 POLR2BP30876 1174 aaKnown RBP2.88□□□□□ -1.95
SCN1A-215ENST00000637285 CTSKP43235 329 aa2.88□□□□□ -1.95
SCN1A-215ENST00000637285 KIAA2012Q0VF49 1180 aa2.88□□□□□ -1.95
SCN1A-215ENST00000637285 CAMK2GQ13555 558 aaPredicted RBP2.88□□□□□ -1.95
SCN1A-215ENST00000637285 MLECQ14165 292 aa2.88□□□□□ -1.95
SCN1A-215ENST00000637285 GATAD2BQ8WXI9 593 aa2.88□□□□□ -1.95
SCN1A-215ENST00000637285 SSBP3Q9BWW4 388 aaPredicted RBP2.88□□□□□ -1.95
SCN1A-215ENST00000637285 KLC2Q9H0B6 622 aa2.88□□□□□ -1.95
SCN1A-215ENST00000637285 WDR26Q9H7D7 661 aa2.88□□□□□ -1.95
SCN1A-215ENST00000637285 PDLIM7Q9NR12 457 aa2.88□□□□□ -1.95
SCN1A-215ENST00000637285 CLEC3AO75596 197 aa2.87□□□□□ -1.95
SCN1A-215ENST00000637285 TGFB2P61812 414 aa2.87□□□□□ -1.95
SCN1A-215ENST00000637285 LMNB2Q03252 620 aa2.87□□□□□ -1.95
SCN1A-215ENST00000637285 ICAM4Q14773 271 aa2.87□□□□□ -1.95
SCN1A-215ENST00000637285 RTP2Q5QGT7 225 aa2.87□□□□□ -1.95
SCN1A-215ENST00000637285 ZNF585AQ6P3V2 769 aa2.87□□□□□ -1.95
SCN1A-215ENST00000637285 BORAQ6PGQ7 559 aa2.87□□□□□ -1.95
SCN1A-215ENST00000637285 FAM124AQ86V42 546 aa2.87□□□□□ -1.95
SCN1A-215ENST00000637285 CDK5RAP1Q96SZ6 601 aaKnown RBP2.87□□□□□ -1.95
SCN1A-215ENST00000637285 ZNF341Q9BYN7 854 aa2.87□□□□□ -1.95
SCN1A-215ENST00000637285 MKRN2Q9H000 416 aaKnown RBP2.87□□□□□ -1.95
SCN1A-215ENST00000637285 DEF6Q9H4E7 631 aa2.87□□□□□ -1.95
SCN1A-215ENST00000637285 AK5Q9Y6K8 562 aa2.87□□□□□ -1.95
SCN1A-215ENST00000637285 MROH6A6NGR9 719 aa2.86□□□□□ -1.95
SCN1A-215ENST00000637285 TLR3O15455 904 aaKnown RBP2.86□□□□□ -1.95
SCN1A-215ENST00000637285 FAM160A1Q05DH4 1040 aa2.86□□□□□ -1.95
SCN1A-215ENST00000637285 RAD51AP2Q09MP3 1159 aa2.86□□□□□ -1.95
SCN1A-215ENST00000637285 FHL2Q14192 279 aa2.86□□□□□ -1.95
SCN1A-215ENST00000637285 MCTP2Q6DN12 878 aa2.86□□□□□ -1.95
SCN1A-215ENST00000637285 FBXO27Q8NI29 283 aa2.86□□□□□ -1.95
SCN1A-215ENST00000637285 DDX11Q96FC9 970 aa2.86□□□□□ -1.95
SCN1A-215ENST00000637285 ASB16Q96NS5 453 aa2.86□□□□□ -1.95
SCN1A-215ENST00000637285 DSCC1Q9BVC3 393 aa2.86□□□□□ -1.95
SCN1A-215ENST00000637285 C1orf115Q9H7X2 142 aa2.86□□□□□ -1.95
SCN1A-215ENST00000637285 RNF19AQ9NV58 838 aa2.86□□□□□ -1.95
SCN1A-215ENST00000637285 PCDHB12Q9Y5F1 795 aa2.86□□□□□ -1.95
SCN1A-215ENST00000637285 NPEPPSL1A6NEC2 478 aa2.85□□□□□ -1.95
SCN1A-215ENST00000637285 GBP2P32456 591 aaPredicted RBP2.85□□□□□ -1.95
SCN1A-215ENST00000637285 CACNB2Q08289 660 aaPredicted RBP2.85□□□□□ -1.95
SCN1A-215ENST00000637285 SNAP47Q5SQN1 464 aa2.85□□□□□ -1.95
SCN1A-215ENST00000637285 CWF19L1Q69YN2 538 aaKnown RBP2.85□□□□□ -1.95
SCN1A-215ENST00000637285 SYT3Q9BQG1 590 aa2.85□□□□□ -1.95
SCN1A-215ENST00000637285 NOC4LQ9BVI4 516 aaKnown RBP2.85□□□□□ -1.95
SCN1A-215ENST00000637285 SLC12A9Q9BXP2 914 aa2.85□□□□□ -1.95
SCN1A-215ENST00000637285 LTBP3Q9NS15 1303 aa2.85□□□□□ -1.95
SCN1A-215ENST00000637285 LAMTOR5O43504 91 aa2.84□□□□□ -1.95
SCN1A-215ENST00000637285 GSNP06396 782 aa2.84□□□□□ -1.95
SCN1A-215ENST00000637285 AUHQ13825 339 aaKnown RBP2.84□□□□□ -1.95
SCN1A-215ENST00000637285 MPP2Q14168 576 aa2.84□□□□□ -1.95
SCN1A-215ENST00000637285 TAF1CQ15572 869 aaPredicted RBP2.84□□□□□ -1.95
SCN1A-215ENST00000637285 SMN1Q16637 294 aaKnown RBP2.84□□□□□ -1.95
SCN1A-215ENST00000637285 SPDYAQ5MJ70 313 aa2.84□□□□□ -1.95
SCN1A-215ENST00000637285 FAM26FQ5R3K3 315 aa2.84□□□□□ -1.95
SCN1A-215ENST00000637285 OVOS1Q6IE37 1185 aa2.84□□□□□ -1.95
SCN1A-215ENST00000637285 CYP2R1Q6VVX0 501 aa2.84□□□□□ -1.95
SCN1A-215ENST00000637285 REC114Q7Z4M0 266 aa2.84□□□□□ -1.95
SCN1A-215ENST00000637285 CABP7Q86V35 215 aa2.84□□□□□ -1.95
SCN1A-215ENST00000637285 GOLM1Q8NBJ4 401 aa2.84□□□□□ -1.95
SCN1A-215ENST00000637285 CPA5Q8WXQ8 436 aa2.84□□□□□ -1.95
SCN1A-215ENST00000637285 TSPAN17Q96FV3 270 aa2.84□□□□□ -1.95
SCN1A-215ENST00000637285 DUSP9Q99956 384 aaKnown RBP2.84□□□□□ -1.95
SCN1A-215ENST00000637285 GORASP1Q9BQQ3 440 aa2.84□□□□□ -1.95
SCN1A-215ENST00000637285 CD248Q9HCU0 757 aa2.84□□□□□ -1.95
SCN1A-215ENST00000637285 GMIPQ9P107 970 aa2.84□□□□□ -1.95
SCN1A-215ENST00000637285 PPP4R1LQ9P1A2 415 aa2.84□□□□□ -1.95
SCN1A-215ENST00000637285 PCDHB14Q9Y5E9 798 aa2.84□□□□□ -1.95
SCN1A-215ENST00000637285 MINDY4BA8MYZ0 360 aa2.83□□□□□ -1.96
SCN1A-215ENST00000637285 NPIPB8E9PQR5 432 aa2.83□□□□□ -1.96
SCN1A-215ENST00000637285 DDX3XO00571 662 aaKnown RBP eCLIP2.83□□□□□ -1.96
SCN1A-215ENST00000637285 FGF10O15520 208 aaPredicted RBP2.83□□□□□ -1.96
SCN1A-215ENST00000637285 PRPF40AO75400 957 aaKnown RBP2.83□□□□□ -1.96
SCN1A-215ENST00000637285 GLI4P10075 376 aa2.83□□□□□ -1.96
SCN1A-215ENST00000637285 CYP2C8P10632 490 aa2.83□□□□□ -1.96
SCN1A-215ENST00000637285 RPL13P26373 211 aaKnown RBP2.83□□□□□ -1.96
SCN1A-215ENST00000637285 THBS2P35442 1172 aa2.83□□□□□ -1.96
SCN1A-215ENST00000637285 CORO7P57737 925 aa2.83□□□□□ -1.96
SCN1A-215ENST00000637285 INHBEP58166 350 aa2.83□□□□□ -1.96
SCN1A-215ENST00000637285 C9orf131Q5VYM1 1079 aa2.83□□□□□ -1.96
SCN1A-215ENST00000637285 STK32CQ86UX6 486 aa2.83□□□□□ -1.96
SCN1A-215ENST00000637285 CIR1Q86X95 450 aaPredicted RBP2.83□□□□□ -1.96
SCN1A-215ENST00000637285 ZNF575Q86XF7 245 aa2.83□□□□□ -1.96
SCN1A-215ENST00000637285 RELL1Q8IUW5 271 aa2.83□□□□□ -1.96
SCN1A-215ENST00000637285 LINC00482Q8N8I6 264 aa2.83□□□□□ -1.96
SCN1A-215ENST00000637285 TXNDC5Q8NBS9 432 aaKnown RBP2.83□□□□□ -1.96
SCN1A-215ENST00000637285 RGS22Q8NE09 1264 aa2.83□□□□□ -1.96
SCN1A-215ENST00000637285 ATG4CQ96DT6 458 aa2.83□□□□□ -1.96
SCN1A-215ENST00000637285 SLC6A18Q96N87 628 aa2.83□□□□□ -1.96
SCN1A-215ENST00000637285 C11orf84Q9BUA3 381 aaPredicted RBP2.83□□□□□ -1.96
SCN1A-215ENST00000637285 BRMS1Q9HCU9 246 aa2.83□□□□□ -1.96
SCN1A-215ENST00000637285 JADE2Q9NQC1 790 aa2.83□□□□□ -1.96
SCN1A-215ENST00000637285 GNEQ9Y223 722 aaKnown RBP2.83□□□□□ -1.96
SCN1A-215ENST00000637285 TCAF1Q9Y4C2 921 aa2.83□□□□□ -1.96
SCN1A-215ENST00000637285 FAM86C2PA6NEL3 165 aa2.82□□□□□ -1.96
SCN1A-215ENST00000637285 H0Y8X5 98 aa2.82□□□□□ -1.96
SCN1A-215ENST00000637285 MUSKO15146 869 aa2.82□□□□□ -1.96
SCN1A-215ENST00000637285 GPR42O15529 346 aa2.82□□□□□ -1.96
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms