RNA–Protein interactions for RNA: ENST00000631023.2

CLN3-240, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-240ENST00000631023 IGHA2P01877 340 aa24.08■■□□□ 1.44
CLN3-240ENST00000631023 MSL3Q8N5Y2 521 aaKnown RBP24.08■■□□□ 1.44
CLN3-240ENST00000631023 U2AF1L4Q8WU68 220 aaKnown RBP24.08■■□□□ 1.44
CLN3-240ENST00000631023 DEFB118Q96PH6 123 aa24.08■■□□□ 1.44
CLN3-240ENST00000631023 LZTS2Q9BRK4 669 aa24.08■■□□□ 1.44
CLN3-240ENST00000631023 TINF2Q9BSI4 451 aa24.08■■□□□ 1.44
CLN3-240ENST00000631023 MYL10Q9BUA6 226 aa24.08■■□□□ 1.44
CLN3-240ENST00000631023 QRICH1Q2TAL8 776 aa24.07■■□□□ 1.44
CLN3-240ENST00000631023 USH1GQ495M9 461 aa24.07■■□□□ 1.44
CLN3-240ENST00000631023 NSMFQ6X4W1 530 aa24.07■■□□□ 1.44
CLN3-240ENST00000631023 ZNF467Q7Z7K2 595 aaPredicted RBP24.07■■□□□ 1.44
CLN3-240ENST00000631023 FBXO11Q86XK2 927 aa24.07■■□□□ 1.44
CLN3-240ENST00000631023 RIOX1Q9H6W3 641 aa24.07■■□□□ 1.44
CLN3-240ENST00000631023 ZBTB5O15062 677 aa24.06■■□□□ 1.44
CLN3-240ENST00000631023 CASTP20810 708 aaKnown RBP24.06■■□□□ 1.44
CLN3-240ENST00000631023 SMARCA1P28370 1054 aa24.06■■□□□ 1.44
CLN3-240ENST00000631023 TRAF1Q13077 416 aa24.06■■□□□ 1.44
CLN3-240ENST00000631023 CYP39A1Q9NYL5 469 aa24.06■■□□□ 1.44
CLN3-240ENST00000631023 ABCB11O95342 1321 aa24.05■■□□□ 1.44
CLN3-240ENST00000631023 TFRCP02786 760 aaKnown RBP24.05■■□□□ 1.44
CLN3-240ENST00000631023 MTMR8Q96EF0 704 aa24.05■■□□□ 1.44
CLN3-240ENST00000631023 AMNQ9BXJ7 453 aa24.05■■□□□ 1.44
CLN3-240ENST00000631023 TAL1P17542 331 aaPredicted RBP24.04■■□□□ 1.44
CLN3-240ENST00000631023 RPS6KB1P23443 525 aa24.04■■□□□ 1.44
CLN3-240ENST00000631023 CNGA1P29973 690 aa24.04■■□□□ 1.44
CLN3-240ENST00000631023 CCND3P30281 292 aaPredicted RBP24.04■■□□□ 1.44
CLN3-240ENST00000631023 FAM133AQ8N9E0 248 aa24.04■■□□□ 1.44
CLN3-240ENST00000631023 FANCBQ8NB91 859 aa24.04■■□□□ 1.44
CLN3-240ENST00000631023 CLEC4DQ8WXI8 215 aa24.04■■□□□ 1.44
CLN3-240ENST00000631023 MAF1Q9H063 256 aa24.04■■□□□ 1.44
CLN3-240ENST00000631023 NRBP1Q9UHY1 535 aa24.04■■□□□ 1.44
CLN3-240ENST00000631023 PTPDC1A2A3K4 754 aa24.03■■□□□ 1.44
CLN3-240ENST00000631023 NFIBO00712 420 aa24.03■■□□□ 1.44
CLN3-240ENST00000631023 CPA1P15085 419 aa24.03■■□□□ 1.44
CLN3-240ENST00000631023 APOA5Q6Q788 366 aa24.03■■□□□ 1.44
CLN3-240ENST00000631023 MAMDC4Q6UXC1 1216 aa24.03■■□□□ 1.44
CLN3-240ENST00000631023 Q6ZUG5 572 aa24.03■■□□□ 1.44
CLN3-240ENST00000631023 MICU3Q86XE3 530 aa24.03■■□□□ 1.44
CLN3-240ENST00000631023 SPZ1Q9BXG8 430 aa24.03■■□□□ 1.44
CLN3-240ENST00000631023 MRPL11Q9Y3B7 192 aaKnown RBP24.03■■□□□ 1.44
CLN3-240ENST00000631023 SYNGAP1Q96PV0 1343 aa24.03■■□□□ 1.44
CLN3-240ENST00000631023 ZBTB43O43298 467 aa24.03■■□□□ 1.44
CLN3-240ENST00000631023 MSCO60682 206 aa24.03■■□□□ 1.44
CLN3-240ENST00000631023 CYBAP13498 195 aa24.03■■□□□ 1.44
CLN3-240ENST00000631023 RXRAP19793 462 aa24.03■■□□□ 1.44
CLN3-240ENST00000631023 CNTN2Q02246 1040 aa24.03■■□□□ 1.44
CLN3-240ENST00000631023 MLLT1Q03111 559 aaPredicted RBP24.03■■□□□ 1.44
CLN3-240ENST00000631023 RNF207Q6ZRF8 634 aa24.03■■□□□ 1.44
CLN3-240ENST00000631023 RUFY3Q7L099 469 aa24.03■■□□□ 1.44
CLN3-240ENST00000631023 HOMER1Q86YM7 354 aa24.03■■□□□ 1.44
CLN3-240ENST00000631023 RGS22Q8NE09 1264 aa24.03■■□□□ 1.44
CLN3-240ENST00000631023 TM6SF1Q9BZW5 370 aa24.03■■□□□ 1.44
CLN3-240ENST00000631023 CRISPLD2Q9H0B8 497 aa24.03■■□□□ 1.44
CLN3-240ENST00000631023 CNPY2Q9Y2B0 182 aa24.03■■□□□ 1.44
CLN3-240ENST00000631023 CYP46A1Q9Y6A2 500 aa24.03■■□□□ 1.44
CLN3-240ENST00000631023 LCTP09848 1927 aa24.03■■□□□ 1.44
CLN3-240ENST00000631023 FRMPD3Q5JV73 1810 aa24.02■■□□□ 1.44
CLN3-240ENST00000631023 PNMA6FA0A0J9YX94 578 aa24.02■■□□□ 1.44
CLN3-240ENST00000631023 CYTH3O43739 400 aa24.02■■□□□ 1.44
CLN3-240ENST00000631023 BAATQ14032 418 aaPredicted RBP24.02■■□□□ 1.44
CLN3-240ENST00000631023 MCF2L2Q86YR7 1114 aa24.02■■□□□ 1.44
CLN3-240ENST00000631023 CCDC144CPQ8IYA2 1237 aa24.02■■□□□ 1.44
CLN3-240ENST00000631023 FBXL16Q8N461 479 aa24.02■■□□□ 1.44
CLN3-240ENST00000631023 PIGSQ96S52 555 aa24.02■■□□□ 1.44
CLN3-240ENST00000631023 ZSWIM6Q9HCJ5 1215 aa24.02■■□□□ 1.44
CLN3-240ENST00000631023 ADD3Q9UEY8 706 aaKnown RBP24.02■■□□□ 1.44
CLN3-240ENST00000631023 PDE4DIPQ5VU43 2346 aa24.01■■□□□ 1.43
CLN3-240ENST00000631023 PRAMEF19Q5SWL8 479 aa24.01■■□□□ 1.43
CLN3-240ENST00000631023 TRPV1Q8NER1 839 aa24.01■■□□□ 1.43
CLN3-240ENST00000631023 RRP36Q96EU6 259 aaKnown RBP24.01■■□□□ 1.43
CLN3-240ENST00000631023 RBM28Q9NW13 759 aaKnown RBP24.01■■□□□ 1.43
CLN3-240ENST00000631023 BRPF3Q9ULD4 1205 aa24.01■■□□□ 1.43
CLN3-240ENST00000631023 PCDHA1Q9Y5I3 950 aa24.01■■□□□ 1.43
CLN3-240ENST00000631023 KLF18A0A0U1RQI7 1052 aa24■■□□□ 1.43
CLN3-240ENST00000631023 ASB14A6NK59 587 aa24■■□□□ 1.43
CLN3-240ENST00000631023 RCAN1P53805 252 aa24■■□□□ 1.43
CLN3-240ENST00000631023 ANAPC15P60006 121 aa24■■□□□ 1.43
CLN3-240ENST00000631023 SLC35G1Q2M3R5 365 aa24■■□□□ 1.43
CLN3-240ENST00000631023 RAB11FIP4Q86YS3 637 aa24■■□□□ 1.43
CLN3-240ENST00000631023 SHISA4Q96DD7 197 aa24■■□□□ 1.43
CLN3-240ENST00000631023 FGD4Q96M96 766 aa24■■□□□ 1.43
CLN3-240ENST00000631023 SEC63Q9UGP8 760 aaKnown RBP24■■□□□ 1.43
CLN3-240ENST00000631023 DDX20Q9UHI6 824 aaKnown RBP24■■□□□ 1.43
CLN3-240ENST00000631023 NAP1L2Q9ULW6 460 aaPredicted RBP24■■□□□ 1.43
CLN3-240ENST00000631023 SEPT4O43236 478 aa23.99■■□□□ 1.43
CLN3-240ENST00000631023 CALML3P27482 149 aa23.99■■□□□ 1.43
CLN3-240ENST00000631023 RPS6P62753 249 aaKnown RBP23.99■■□□□ 1.43
CLN3-240ENST00000631023 PPP2R5BQ15173 497 aa23.99■■□□□ 1.43
CLN3-240ENST00000631023 BRF1Q92994 677 aa23.99■■□□□ 1.43
CLN3-240ENST00000631023 SOWAHBA6NEL2 793 aa23.99■■□□□ 1.43
CLN3-240ENST00000631023 PLEKHA8P1O95397 391 aa23.99■■□□□ 1.43
CLN3-240ENST00000631023 SNAI1O95863 264 aaPredicted RBP23.99■■□□□ 1.43
CLN3-240ENST00000631023 RTN1Q16799 776 aa23.99■■□□□ 1.43
CLN3-240ENST00000631023 ARMCX2Q7L311 632 aa23.99■■□□□ 1.43
CLN3-240ENST00000631023 SRBD1Q8N5C6 995 aaKnown RBP23.99■■□□□ 1.43
CLN3-240ENST00000631023 AGXT2Q9BYV1 514 aa23.99■■□□□ 1.43
CLN3-240ENST00000631023 CDKN2AIPQ9NXV6 580 aaPredicted RBP23.99■■□□□ 1.43
CLN3-240ENST00000631023 OGDHLQ9ULD0 1010 aa23.99■■□□□ 1.43
CLN3-240ENST00000631023 LOC102724159A0A0B4J2E5 919 aa23.98■■□□□ 1.43
CLN3-240ENST00000631023 APOBRQ0VD83 1088 aa23.98■■□□□ 1.43
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms