RNA–Protein interactions for RNA: ENST00000628023.3

CLN3-239, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,183 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-239ENST00000628023 GOLGA8BA8MQT2 603 aa21.01■□□□□ 0.95
CLN3-239ENST00000628023 ICAM1P05362 532 aa21.01■□□□□ 0.95
CLN3-239ENST00000628023 ALAS1P13196 640 aa21.01■□□□□ 0.95
CLN3-239ENST00000628023 PTPREP23469 700 aa21.01■□□□□ 0.95
CLN3-239ENST00000628023 GNAQP50148 359 aa21.01■□□□□ 0.95
CLN3-239ENST00000628023 APOBRQ0VD83 1088 aa21.01■□□□□ 0.95
CLN3-239ENST00000628023 MAP2K5Q13163 448 aa21.01■□□□□ 0.95
CLN3-239ENST00000628023 USP6NLQ92738 828 aa21.01■□□□□ 0.95
CLN3-239ENST00000628023 MMP19Q99542 508 aa21.01■□□□□ 0.95
CLN3-239ENST00000628023 C22orf23Q9BZE7 217 aa21.01■□□□□ 0.95
CLN3-239ENST00000628023 PDRG1Q9NUG6 133 aa21.01■□□□□ 0.95
CLN3-239ENST00000628023 PNMA2Q9UL42 364 aa21.01■□□□□ 0.95
CLN3-239ENST00000628023 OGDHLQ9ULD0 1010 aa21.01■□□□□ 0.95
CLN3-239ENST00000628023 BRPF3Q9ULD4 1205 aa21.01■□□□□ 0.95
CLN3-239ENST00000628023 RIPK3Q9Y572 518 aa21.01■□□□□ 0.95
CLN3-239ENST00000628023 ZNF536O15090 1300 aa21.01■□□□□ 0.95
CLN3-239ENST00000628023 SLC15A5A6NIM6 579 aa21■□□□□ 0.95
CLN3-239ENST00000628023 FCER1AP12319 257 aa21■□□□□ 0.95
CLN3-239ENST00000628023 CACNB2Q08289 660 aaPredicted RBP21■□□□□ 0.95
CLN3-239ENST00000628023 KCTD2Q14681 263 aa21■□□□□ 0.95
CLN3-239ENST00000628023 RTN1Q16799 776 aa21■□□□□ 0.95
CLN3-239ENST00000628023 MFSD14CQ5VZR4 134 aa21■□□□□ 0.95
CLN3-239ENST00000628023 HOMER1Q86YM7 354 aa21■□□□□ 0.95
CLN3-239ENST00000628023 DIS3LQ8TF46 1054 aaKnown RBP21■□□□□ 0.95
CLN3-239ENST00000628023 C11orf49Q9H6J7 331 aa21■□□□□ 0.95
CLN3-239ENST00000628023 RNF146Q9NTX7 359 aa21■□□□□ 0.95
CLN3-239ENST00000628023 FBXO40Q9UH90 709 aa21■□□□□ 0.95
CLN3-239ENST00000628023 STRNO43815 780 aa20.99■□□□□ 0.95
CLN3-239ENST00000628023 ADORA2AP29274 412 aa20.99■□□□□ 0.95
CLN3-239ENST00000628023 GRB14Q14449 540 aa20.99■□□□□ 0.95
CLN3-239ENST00000628023 TKFCQ3LXA3 575 aa20.99■□□□□ 0.95
CLN3-239ENST00000628023 FBXL16Q8N461 479 aa20.99■□□□□ 0.95
CLN3-239ENST00000628023 FANCBQ8NB91 859 aa20.99■□□□□ 0.95
CLN3-239ENST00000628023 CHST13Q8NET6 341 aa20.99■□□□□ 0.95
CLN3-239ENST00000628023 LZTS2Q9BRK4 669 aa20.99■□□□□ 0.95
CLN3-239ENST00000628023 ACAD9Q9H845 621 aa20.99■□□□□ 0.95
CLN3-239ENST00000628023 JMJD4Q9H9V9 463 aa20.99■□□□□ 0.95
CLN3-239ENST00000628023 RBM28Q9NW13 759 aaKnown RBP20.99■□□□□ 0.95
CLN3-239ENST00000628023 A0A1W2PPC1 479 aa20.98■□□□□ 0.95
CLN3-239ENST00000628023 TAL1P17542 331 aaPredicted RBP20.98■□□□□ 0.95
CLN3-239ENST00000628023 METAP2P50579 478 aaKnown RBP eCLIP20.98■□□□□ 0.95
CLN3-239ENST00000628023 QRICH1Q2TAL8 776 aa20.98■□□□□ 0.95
CLN3-239ENST00000628023 USH1GQ495M9 461 aa20.98■□□□□ 0.95
CLN3-239ENST00000628023 DPP9Q86TI2 863 aa20.98■□□□□ 0.95
CLN3-239ENST00000628023 TRERF1Q96PN7 1200 aa20.98■□□□□ 0.95
CLN3-239ENST00000628023 PLEKHA8P1O95397 391 aa20.97■□□□□ 0.95
CLN3-239ENST00000628023 RCAN1P53805 252 aa20.97■□□□□ 0.95
CLN3-239ENST00000628023 TOB2Q14106 344 aaPredicted RBP20.97■□□□□ 0.95
CLN3-239ENST00000628023 CCL14Q16627 93 aa20.97■□□□□ 0.95
CLN3-239ENST00000628023 TMTC3Q6ZXV5 915 aa20.97■□□□□ 0.95
CLN3-239ENST00000628023 FBXO11Q86XK2 927 aa20.97■□□□□ 0.95
CLN3-239ENST00000628023 ABRAQ8N0Z2 381 aa20.97■□□□□ 0.95
CLN3-239ENST00000628023 ANKRD35Q8N283 1001 aa20.97■□□□□ 0.95
CLN3-239ENST00000628023 PIBF1Q8WXW3 757 aa20.97■□□□□ 0.95
CLN3-239ENST00000628023 IL17RAQ96F46 866 aa20.97■□□□□ 0.95
CLN3-239ENST00000628023 AGXT2Q9BYV1 514 aa20.97■□□□□ 0.95
CLN3-239ENST00000628023 SLC5A4Q9NY91 659 aa20.97■□□□□ 0.95
CLN3-239ENST00000628023 ZBTB5O15062 677 aa20.96■□□□□ 0.95
CLN3-239ENST00000628023 C7orf61Q8IZ16 206 aa20.96■□□□□ 0.95
CLN3-239ENST00000628023 CMTR1Q8N1G2 835 aaKnown RBP20.96■□□□□ 0.95
CLN3-239ENST00000628023 RRP36Q96EU6 259 aaKnown RBP20.96■□□□□ 0.95
CLN3-239ENST00000628023 DDX11Q96FC9 970 aa20.96■□□□□ 0.95
CLN3-239ENST00000628023 PIGSQ96S52 555 aa20.96■□□□□ 0.95
CLN3-239ENST00000628023 SPZ1Q9BXG8 430 aa20.96■□□□□ 0.95
CLN3-239ENST00000628023 PRO3102Q9H379 93 aa20.96■□□□□ 0.95
CLN3-239ENST00000628023 RIOX1Q9H6W3 641 aa20.96■□□□□ 0.95
CLN3-239ENST00000628023 SEC63Q9UGP8 760 aaKnown RBP20.96■□□□□ 0.95
CLN3-239ENST00000628023 CCDC196A0A1B0GTZ2 297 aa20.95■□□□□ 0.94
CLN3-239ENST00000628023 CCND3P30281 292 aaPredicted RBP20.95■□□□□ 0.94
CLN3-239ENST00000628023 NEK4P51957 841 aa20.95■□□□□ 0.94
CLN3-239ENST00000628023 CCDC82Q8N4S0 544 aa20.95■□□□□ 0.94
CLN3-239ENST00000628023 ZNF236Q9UL36 1845 aa20.94■□□□□ 0.94
CLN3-239ENST00000628023 CYTH3O43739 400 aa20.94■□□□□ 0.94
CLN3-239ENST00000628023 MSCO60682 206 aa20.94■□□□□ 0.94
CLN3-239ENST00000628023 PGK2P07205 417 aa20.94■□□□□ 0.94
CLN3-239ENST00000628023 HOXC6P09630 235 aa20.94■□□□□ 0.94
CLN3-239ENST00000628023 SMARCA1P28370 1054 aa20.94■□□□□ 0.94
CLN3-239ENST00000628023 RBM25P49756 843 aaKnown RBP20.94■□□□□ 0.94
CLN3-239ENST00000628023 ANKRD1Q15327 319 aa20.94■□□□□ 0.94
CLN3-239ENST00000628023 MUM1L1Q5H9M0 696 aa20.94■□□□□ 0.94
CLN3-239ENST00000628023 NSMFQ6X4W1 530 aa20.94■□□□□ 0.94
CLN3-239ENST00000628023 SRBD1Q8N5C6 995 aaKnown RBP20.94■□□□□ 0.94
CLN3-239ENST00000628023 MTMR8Q96EF0 704 aa20.94■□□□□ 0.94
CLN3-239ENST00000628023 LARP6Q9BRS8 491 aaKnown RBP20.94■□□□□ 0.94
CLN3-239ENST00000628023 AMNQ9BXJ7 453 aa20.94■□□□□ 0.94
CLN3-239ENST00000628023 ABCB11O95342 1321 aa20.94■□□□□ 0.94
CLN3-239ENST00000628023 BAZ2BQ9UIF8 2168 aaKnown RBP20.93■□□□□ 0.94
CLN3-239ENST00000628023 PNMA6FA0A0J9YX94 578 aa20.93■□□□□ 0.94
CLN3-239ENST00000628023 TRAF1Q13077 416 aa20.93■□□□□ 0.94
CLN3-239ENST00000628023 PPP2R5BQ15173 497 aa20.93■□□□□ 0.94
CLN3-239ENST00000628023 SLC35G1Q2M3R5 365 aa20.93■□□□□ 0.94
CLN3-239ENST00000628023 NOL8Q76FK4 1167 aaKnown RBP20.93■□□□□ 0.94
CLN3-239ENST00000628023 BACH2Q9BYV9 841 aa20.93■□□□□ 0.94
CLN3-239ENST00000628023 MYH6P13533 1939 aa20.93■□□□□ 0.94
CLN3-239ENST00000628023 PFASO15067 1338 aa20.93■□□□□ 0.94
CLN3-239ENST00000628023 NFIBO00712 420 aa20.92■□□□□ 0.94
CLN3-239ENST00000628023 COBLO75128 1261 aa20.92■□□□□ 0.94
CLN3-239ENST00000628023 CNGA1P29973 690 aa20.92■□□□□ 0.94
CLN3-239ENST00000628023 MNX1P50219 401 aaPredicted RBP20.92■□□□□ 0.94
CLN3-239ENST00000628023 AK2P54819 239 aa20.92■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms