RNA–Protein interactions for RNA: ENST00000616974.1

LINC00540-202, long intergenic non-protein coding RNA 540, humanhuman

TSL 1 (best)

Gene LINC00540, Length 2,143 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-202ENST00000616974 BIN2Q9UBW5 565 aaPredicted RBP15.7■□□□□ 0.1
LINC00540-202ENST00000616974 SZT2Q5T011 3432 aa15.7■□□□□ 0.1
LINC00540-202ENST00000616974 WDR19Q8NEZ3 1342 aa15.7■□□□□ 0.1
LINC00540-202ENST00000616974 DDAH1O94760 285 aa15.7■□□□□ 0.1
LINC00540-202ENST00000616974 LARGE1O95461 756 aa15.7■□□□□ 0.1
LINC00540-202ENST00000616974 SLC25A27O95847 323 aa15.7■□□□□ 0.1
LINC00540-202ENST00000616974 IGHA2P01877 340 aa15.7■□□□□ 0.1
LINC00540-202ENST00000616974 CCT2P78371 535 aaKnown RBP15.7■□□□□ 0.1
LINC00540-202ENST00000616974 NSMFQ6X4W1 530 aa15.7■□□□□ 0.1
LINC00540-202ENST00000616974 DPP9Q86TI2 863 aa15.7■□□□□ 0.1
LINC00540-202ENST00000616974 APBA2Q99767 749 aa15.7■□□□□ 0.1
LINC00540-202ENST00000616974 LRRC37A2A6NM11 1700 aa15.69■□□□□ 0.1
LINC00540-202ENST00000616974 GOLGA8BA8MQT2 603 aa15.69■□□□□ 0.1
LINC00540-202ENST00000616974 EPB41L2O43491 1005 aaKnown RBP15.69■□□□□ 0.1
LINC00540-202ENST00000616974 CCND3P30281 292 aaPredicted RBP15.69■□□□□ 0.1
LINC00540-202ENST00000616974 RGS2P41220 211 aa15.69■□□□□ 0.1
LINC00540-202ENST00000616974 OAZ1P54368 228 aa15.69■□□□□ 0.1
LINC00540-202ENST00000616974 FGD1P98174 961 aa15.69■□□□□ 0.1
LINC00540-202ENST00000616974 CACNB2Q08289 660 aaPredicted RBP15.69■□□□□ 0.1
LINC00540-202ENST00000616974 FUT2Q10981 343 aa15.69■□□□□ 0.1
LINC00540-202ENST00000616974 STK3Q13188 491 aa15.69■□□□□ 0.1
LINC00540-202ENST00000616974 ZNF792Q3KQV3 632 aa15.69■□□□□ 0.1
LINC00540-202ENST00000616974 ANKRD35Q8N283 1001 aa15.69■□□□□ 0.1
LINC00540-202ENST00000616974 SOCS4Q8WXH5 440 aa15.69■□□□□ 0.1
LINC00540-202ENST00000616974 MAML3Q96JK9 1138 aa15.69■□□□□ 0.1
LINC00540-202ENST00000616974 MTA3Q9BTC8 594 aa15.69■□□□□ 0.1
LINC00540-202ENST00000616974 COL20A1Q9P218 1284 aa15.69■□□□□ 0.1
LINC00540-202ENST00000616974 DNAJC25-GNG10A0A024R161 153 aa15.68■□□□□ 0.1
LINC00540-202ENST00000616974 ADAMTS3O15072 1205 aa15.68■□□□□ 0.1
LINC00540-202ENST00000616974 PRKAR2AP13861 404 aaKnown RBP15.68■□□□□ 0.1
LINC00540-202ENST00000616974 KCTD2Q14681 263 aa15.68■□□□□ 0.1
LINC00540-202ENST00000616974 ANO1Q5XXA6 986 aa15.68■□□□□ 0.1
LINC00540-202ENST00000616974 TMTC3Q6ZXV5 915 aa15.68■□□□□ 0.1
LINC00540-202ENST00000616974 CTCFLQ8NI51 663 aaPredicted RBP15.68■□□□□ 0.1
LINC00540-202ENST00000616974 LENG1Q96BZ8 264 aaPredicted RBP15.68■□□□□ 0.1
LINC00540-202ENST00000616974 ACAD9Q9H845 621 aa15.68■□□□□ 0.1
LINC00540-202ENST00000616974 CYP46A1Q9Y6A2 500 aa15.68■□□□□ 0.1
LINC00540-202ENST00000616974 SOWAHBA6NEL2 793 aa15.68■□□□□ 0.1
LINC00540-202ENST00000616974 ZBTB43O43298 467 aa15.68■□□□□ 0.1
LINC00540-202ENST00000616974 HMGB1P09429 215 aaKnown RBP15.68■□□□□ 0.1
LINC00540-202ENST00000616974 HOXC6P09630 235 aa15.68■□□□□ 0.1
LINC00540-202ENST00000616974 ARHGEF6Q15052 776 aa15.68■□□□□ 0.1
LINC00540-202ENST00000616974 TMEM63BQ5T3F8 832 aa15.68■□□□□ 0.1
LINC00540-202ENST00000616974 GPKOWQ92917 476 aaPredicted RBP eCLIP15.68■□□□□ 0.1
LINC00540-202ENST00000616974 CYP39A1Q9NYL5 469 aa15.68■□□□□ 0.1
LINC00540-202ENST00000616974 PCDH10Q9P2E7 1040 aa15.68■□□□□ 0.1
LINC00540-202ENST00000616974 CNTNAP5Q8WYK1 1306 aa15.68■□□□□ 0.1
LINC00540-202ENST00000616974 KIAA1217Q5T5P2 1943 aa15.67■□□□□ 0.1
LINC00540-202ENST00000616974 STRNO43815 780 aa15.67■□□□□ 0.1
LINC00540-202ENST00000616974 PDIA3P30101 505 aaKnown RBP15.67■□□□□ 0.1
LINC00540-202ENST00000616974 AK2P54819 239 aa15.67■□□□□ 0.1
LINC00540-202ENST00000616974 BAATQ14032 418 aaPredicted RBP15.67■□□□□ 0.1
LINC00540-202ENST00000616974 TYW1BQ6NUM6 668 aa15.67■□□□□ 0.1
LINC00540-202ENST00000616974 SLAIN1Q8ND83 568 aa15.67■□□□□ 0.1
LINC00540-202ENST00000616974 PXYLP1Q8TE99 480 aa15.67■□□□□ 0.1
LINC00540-202ENST00000616974 SHISA4Q96DD7 197 aa15.67■□□□□ 0.1
LINC00540-202ENST00000616974 TM6SF1Q9BZW5 370 aa15.67■□□□□ 0.1
LINC00540-202ENST00000616974 PDRG1Q9NUG6 133 aa15.67■□□□□ 0.1
LINC00540-202ENST00000616974 TPCN1Q9ULQ1 816 aa15.67■□□□□ 0.1
LINC00540-202ENST00000616974 DOCK5Q9H7D0 1870 aa15.67■□□□□ 0.1
LINC00540-202ENST00000616974 GOLGA8AA7E2F4 631 aa15.67■□□□□ 0.1
LINC00540-202ENST00000616974 ZBTB5O15062 677 aa15.67■□□□□ 0.1
LINC00540-202ENST00000616974 XRCC5P13010 732 aaKnown RBP15.67■□□□□ 0.1
LINC00540-202ENST00000616974 CCL5P13501 91 aa15.67■□□□□ 0.1
LINC00540-202ENST00000616974 EN2P19622 333 aaPredicted RBP15.67■□□□□ 0.1
LINC00540-202ENST00000616974 PSMA5P28066 241 aa15.67■□□□□ 0.1
LINC00540-202ENST00000616974 RPS6P62753 249 aaKnown RBP15.67■□□□□ 0.1
LINC00540-202ENST00000616974 PHKBQ93100 1093 aa15.67■□□□□ 0.1
LINC00540-202ENST00000616974 DDX11Q96FC9 970 aa15.67■□□□□ 0.1
LINC00540-202ENST00000616974 PTPDC1A2A3K4 754 aa15.66■□□□□ 0.1
LINC00540-202ENST00000616974 ADCY6O43306 1168 aa15.66■□□□□ 0.1
LINC00540-202ENST00000616974 HMGCRP04035 888 aa15.66■□□□□ 0.1
LINC00540-202ENST00000616974 PRMT2P55345 433 aa15.66■□□□□ 0.1
LINC00540-202ENST00000616974 IRX5P78411 483 aaPredicted RBP15.66■□□□□ 0.1
LINC00540-202ENST00000616974 RTN1Q16799 776 aa15.66■□□□□ 0.1
LINC00540-202ENST00000616974 FBXO11Q86XK2 927 aa15.66■□□□□ 0.1
LINC00540-202ENST00000616974 TMTC2Q8N394 836 aa15.66■□□□□ 0.1
LINC00540-202ENST00000616974 FAM133AQ8N9E0 248 aa15.66■□□□□ 0.1
LINC00540-202ENST00000616974 CHST13Q8NET6 341 aa15.66■□□□□ 0.1
LINC00540-202ENST00000616974 ZFP91Q96JP5 570 aaPredicted RBP15.66■□□□□ 0.1
LINC00540-202ENST00000616974 C22orf23Q9BZE7 217 aa15.66■□□□□ 0.1
LINC00540-202ENST00000616974 CD2BP2O95400 341 aaKnown RBP15.65■□□□□ 0.1
LINC00540-202ENST00000616974 CALML3P27482 149 aa15.65■□□□□ 0.1
LINC00540-202ENST00000616974 HOXA13P31271 388 aaPredicted RBP15.65■□□□□ 0.1
LINC00540-202ENST00000616974 MAP3K21Q5TCX8 1036 aa15.65■□□□□ 0.1
LINC00540-202ENST00000616974 ABRAQ8N0Z2 381 aa15.65■□□□□ 0.1
LINC00540-202ENST00000616974 RNF208Q9H0X6 261 aa15.65■□□□□ 0.1
LINC00540-202ENST00000616974 PCDHA1Q9Y5I3 950 aa15.65■□□□□ 0.1
LINC00540-202ENST00000616974 SNAI1O95863 264 aaPredicted RBP15.65■□□□□ 0.1
LINC00540-202ENST00000616974 FDX1P10109 184 aa15.65■□□□□ 0.1
LINC00540-202ENST00000616974 METAP2P50579 478 aaKnown RBP eCLIP15.65■□□□□ 0.1
LINC00540-202ENST00000616974 NEK4P51957 841 aa15.65■□□□□ 0.1
LINC00540-202ENST00000616974 NTRK3Q16288 839 aa15.65■□□□□ 0.1
LINC00540-202ENST00000616974 FBXL16Q8N461 479 aa15.65■□□□□ 0.1
LINC00540-202ENST00000616974 IL17RAQ96F46 866 aa15.65■□□□□ 0.1
LINC00540-202ENST00000616974 SPZ1Q9BXG8 430 aa15.65■□□□□ 0.1
LINC00540-202ENST00000616974 ANAPC15P60006 121 aa15.64■□□□□ 0.09
LINC00540-202ENST00000616974 ST3GAL1Q11201 340 aa15.64■□□□□ 0.09
LINC00540-202ENST00000616974 EEPD1Q7L9B9 569 aa15.64■□□□□ 0.09
LINC00540-202ENST00000616974 DEFB118Q96PH6 123 aa15.64■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 65.5 ms