RNA–Protein interactions for RNA: ENST00000614678.1

CPNE3-208, Transcript of copine 3, humanhuman

TSL 1 (best)

Gene CPNE3, Length 4,201 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-208ENST00000614678 KLRF2D3W0D1 207 aa6.67□□□□□ -1.34
CPNE3-208ENST00000614678 DHX16O60231 1041 aaKnown RBP6.67□□□□□ -1.34
CPNE3-208ENST00000614678 KIAA1211Q6ZU35 1233 aa6.67□□□□□ -1.34
CPNE3-208ENST00000614678 MICU3Q86XE3 530 aa6.67□□□□□ -1.34
CPNE3-208ENST00000614678 FBXO16Q8IX29 292 aaPredicted RBP6.67□□□□□ -1.34
CPNE3-208ENST00000614678 SRBD1Q8N5C6 995 aaKnown RBP6.67□□□□□ -1.34
CPNE3-208ENST00000614678 CYP39A1Q9NYL5 469 aa6.67□□□□□ -1.34
CPNE3-208ENST00000614678 C5orf42Q9H799 3197 aa6.67□□□□□ -1.34
CPNE3-208ENST00000614678 ZBED4O75132 1171 aa6.67□□□□□ -1.34
CPNE3-208ENST00000614678 GNRH1P01148 92 aa6.67□□□□□ -1.34
CPNE3-208ENST00000614678 CDC27P30260 824 aa6.67□□□□□ -1.34
CPNE3-208ENST00000614678 CCNA1P78396 465 aa6.67□□□□□ -1.34
CPNE3-208ENST00000614678 COPS5Q92905 334 aa6.67□□□□□ -1.34
CPNE3-208ENST00000614678 GPKOWQ92917 476 aaPredicted RBP eCLIP6.67□□□□□ -1.34
CPNE3-208ENST00000614678 DDX11Q96FC9 970 aa6.67□□□□□ -1.34
CPNE3-208ENST00000614678 HMX1Q9NP08 348 aaPredicted RBP6.67□□□□□ -1.34
CPNE3-208ENST00000614678 RPTORQ8N122 1335 aa6.67□□□□□ -1.34
CPNE3-208ENST00000614678 PTPDC1A2A3K4 754 aa6.67□□□□□ -1.34
CPNE3-208ENST00000614678 SH2B2O14492 632 aaPredicted RBP6.67□□□□□ -1.34
CPNE3-208ENST00000614678 ZNF865P0CJ78 1059 aaPredicted RBP6.67□□□□□ -1.34
CPNE3-208ENST00000614678 XRCC5P13010 732 aaKnown RBP6.67□□□□□ -1.34
CPNE3-208ENST00000614678 APOBRQ0VD83 1088 aa6.67□□□□□ -1.34
CPNE3-208ENST00000614678 KCTD2Q14681 263 aa6.67□□□□□ -1.34
CPNE3-208ENST00000614678 WTAPQ15007 396 aa6.67□□□□□ -1.34
CPNE3-208ENST00000614678 TYW1BQ6NUM6 668 aa6.67□□□□□ -1.34
CPNE3-208ENST00000614678 NOL8Q76FK4 1167 aaKnown RBP6.67□□□□□ -1.34
CPNE3-208ENST00000614678 KRT23Q9C075 422 aa6.67□□□□□ -1.34
CPNE3-208ENST00000614678 NCOA5Q9HCD5 579 aaKnown RBP6.67□□□□□ -1.34
CPNE3-208ENST00000614678 RBBP6Q7Z6E9 1792 aaKnown RBP6.66□□□□□ -1.34
CPNE3-208ENST00000614678 PALM3A6NDB9 673 aaPredicted RBP6.66□□□□□ -1.34
CPNE3-208ENST00000614678 HOXC6P09630 235 aa6.66□□□□□ -1.34
CPNE3-208ENST00000614678 ADCYAP1R1P41586 468 aa6.66□□□□□ -1.34
CPNE3-208ENST00000614678 RPS6P62753 249 aaKnown RBP6.66□□□□□ -1.34
CPNE3-208ENST00000614678 BEX3Q00994 111 aa6.66□□□□□ -1.34
CPNE3-208ENST00000614678 BTNL9Q6UXG8 535 aa6.66□□□□□ -1.34
CPNE3-208ENST00000614678 RALYLQ86SE5 291 aaKnown RBP6.66□□□□□ -1.34
CPNE3-208ENST00000614678 IL31RAQ8NI17 732 aa6.66□□□□□ -1.34
CPNE3-208ENST00000614678 DCAF4Q8WV16 495 aa6.66□□□□□ -1.34
CPNE3-208ENST00000614678 SOCS4Q8WXH5 440 aa6.66□□□□□ -1.34
CPNE3-208ENST00000614678 JAKMIP1Q96N16 626 aaKnown RBP6.66□□□□□ -1.34
CPNE3-208ENST00000614678 TINF2Q9BSI4 451 aa6.66□□□□□ -1.34
CPNE3-208ENST00000614678 KATNBL1Q9H079 304 aa6.66□□□□□ -1.34
CPNE3-208ENST00000614678 FAM217BQ9NTX9 383 aaPredicted RBP6.66□□□□□ -1.34
CPNE3-208ENST00000614678 ZHX1Q9UKY1 873 aaPredicted RBP6.66□□□□□ -1.34
CPNE3-208ENST00000614678 ICAM1P05362 532 aa6.66□□□□□ -1.34
CPNE3-208ENST00000614678 EXOSC10Q01780 885 aaKnown RBP6.66□□□□□ -1.34
CPNE3-208ENST00000614678 ZNF654Q8IZM8 581 aa6.66□□□□□ -1.34
CPNE3-208ENST00000614678 MB21D1Q8N884 522 aa6.66□□□□□ -1.34
CPNE3-208ENST00000614678 ANKS1AQ92625 1134 aa6.66□□□□□ -1.34
CPNE3-208ENST00000614678 TTC14Q96N46 770 aa6.66□□□□□ -1.34
CPNE3-208ENST00000614678 USP26Q9BXU7 913 aa6.66□□□□□ -1.34
CPNE3-208ENST00000614678 CRISPLD2Q9H0B8 497 aa6.66□□□□□ -1.34
CPNE3-208ENST00000614678 MROH8Q9H579 483 aa6.66□□□□□ -1.34
CPNE3-208ENST00000614678 PARP1P09874 1014 aaKnown RBP6.66□□□□□ -1.34
CPNE3-208ENST00000614678 ADD1P35611 737 aaKnown RBP6.66□□□□□ -1.34
CPNE3-208ENST00000614678 ARMCX2Q7L311 632 aa6.66□□□□□ -1.34
CPNE3-208ENST00000614678 FAM133AQ8N9E0 248 aa6.66□□□□□ -1.34
CPNE3-208ENST00000614678 PGBD1Q96JS3 809 aa6.66□□□□□ -1.34
CPNE3-208ENST00000614678 TAAR1Q96RJ0 339 aa6.66□□□□□ -1.34
CPNE3-208ENST00000614678 ZMYND8Q9ULU4 1186 aaPredicted RBP6.66□□□□□ -1.34
CPNE3-208ENST00000614678 NAP1L2Q9ULW6 460 aaPredicted RBP6.66□□□□□ -1.34
CPNE3-208ENST00000614678 DOCK5Q9H7D0 1870 aa6.66□□□□□ -1.34
CPNE3-208ENST00000614678 H0YGN5 161 aa6.65□□□□□ -1.34
CPNE3-208ENST00000614678 ATP2A1O14983 1001 aa6.65□□□□□ -1.34
CPNE3-208ENST00000614678 ARIH2O95376 493 aa6.65□□□□□ -1.34
CPNE3-208ENST00000614678 HSPA4P34932 840 aa6.65□□□□□ -1.34
CPNE3-208ENST00000614678 TRDNQ13061 729 aa6.65□□□□□ -1.34
CPNE3-208ENST00000614678 LRRC26Q2I0M4 334 aa6.65□□□□□ -1.34
CPNE3-208ENST00000614678 CHURC1Q8WUH1 139 aa6.65□□□□□ -1.34
CPNE3-208ENST00000614678 NEK1Q96PY6 1258 aa6.65□□□□□ -1.34
CPNE3-208ENST00000614678 GJB4Q9NTQ9 266 aa6.65□□□□□ -1.34
CPNE3-208ENST00000614678 CTDP1Q9Y5B0 961 aaPredicted RBP6.65□□□□□ -1.34
CPNE3-208ENST00000614678 FARP2O94887 1054 aaPredicted RBP6.65□□□□□ -1.34
CPNE3-208ENST00000614678 CCDC144BQ3MJ40 725 aa6.65□□□□□ -1.34
CPNE3-208ENST00000614678 USP17L6PQ6QN14 398 aa6.65□□□□□ -1.34
CPNE3-208ENST00000614678 SHCBP1Q8NEM2 672 aa6.65□□□□□ -1.34
CPNE3-208ENST00000614678 SENP6Q9GZR1 1112 aaPredicted RBP6.65□□□□□ -1.34
CPNE3-208ENST00000614678 ACAD9Q9H845 621 aa6.65□□□□□ -1.34
CPNE3-208ENST00000614678 CDKN2AIPQ9NXV6 580 aaPredicted RBP6.65□□□□□ -1.34
CPNE3-208ENST00000614678 STRNO43815 780 aa6.65□□□□□ -1.35
CPNE3-208ENST00000614678 CFBP00751 764 aa6.65□□□□□ -1.35
CPNE3-208ENST00000614678 CASTP20810 708 aaKnown RBP6.65□□□□□ -1.35
CPNE3-208ENST00000614678 PRMT2P55345 433 aa6.65□□□□□ -1.35
CPNE3-208ENST00000614678 CCT2P78371 535 aaKnown RBP6.65□□□□□ -1.35
CPNE3-208ENST00000614678 ARHGEF6Q15052 776 aa6.65□□□□□ -1.35
CPNE3-208ENST00000614678 MAMDC4Q6UXC1 1216 aa6.65□□□□□ -1.35
CPNE3-208ENST00000614678 NFXL1Q6ZNB6 911 aa6.65□□□□□ -1.35
CPNE3-208ENST00000614678 Q6ZUG5 572 aa6.65□□□□□ -1.35
CPNE3-208ENST00000614678 DPF3Q92784 378 aa6.65□□□□□ -1.35
CPNE3-208ENST00000614678 BRF1Q92994 677 aa6.65□□□□□ -1.35
CPNE3-208ENST00000614678 CNNM2Q9H8M5 875 aa6.65□□□□□ -1.35
CPNE3-208ENST00000614678 CTAGE5O15320 804 aa6.65□□□□□ -1.35
CPNE3-208ENST00000614678 SLC25A27O95847 323 aa6.65□□□□□ -1.35
CPNE3-208ENST00000614678 ITGB8P26012 769 aa6.65□□□□□ -1.35
CPNE3-208ENST00000614678 STK3Q13188 491 aa6.65□□□□□ -1.35
CPNE3-208ENST00000614678 GRM4Q14833 912 aa6.65□□□□□ -1.35
CPNE3-208ENST00000614678 SH3RF1Q7Z6J0 888 aa6.65□□□□□ -1.35
CPNE3-208ENST00000614678 PHKBQ93100 1093 aa6.65□□□□□ -1.35
CPNE3-208ENST00000614678 DDX20Q9UHI6 824 aaKnown RBP6.65□□□□□ -1.35
CPNE3-208ENST00000614678 POTEB2H3BUK9 544 aa6.64□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms