RNA–Protein interactions for RNA: ENST00000600259.5

VRK3-220, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 572 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-220ENST00000600259 LRRCC1Q9C099 1032 aa7.3□□□□□ -1.24
VRK3-220ENST00000600259 BCL11AQ9H165 835 aa7.3□□□□□ -1.24
VRK3-220ENST00000600259 TRPV6Q9H1D0 765 aa7.3□□□□□ -1.24
VRK3-220ENST00000600259 NKX2-4Q9H2Z4 354 aa7.3□□□□□ -1.24
VRK3-220ENST00000600259 SPC25Q9HBM1 224 aa7.3□□□□□ -1.24
VRK3-220ENST00000600259 ECHDC1Q9NTX5 307 aa7.3□□□□□ -1.24
VRK3-220ENST00000600259 Q9Y3F1 56 aa7.3□□□□□ -1.24
VRK3-220ENST00000600259 TRANK1O15050 2925 aa7.3□□□□□ -1.24
VRK3-220ENST00000600259 PLXNA1Q9UIW2 1896 aa7.3□□□□□ -1.24
VRK3-220ENST00000600259 REV3LO60673 3130 aa7.3□□□□□ -1.24
VRK3-220ENST00000600259 M0R2C6 588 aa7.29□□□□□ -1.24
VRK3-220ENST00000600259 TLR3O15455 904 aaKnown RBP7.29□□□□□ -1.24
VRK3-220ENST00000600259 DYNC1LI2O43237 492 aaPredicted RBP7.29□□□□□ -1.24
VRK3-220ENST00000600259 B4GALT4O60513 344 aa7.29□□□□□ -1.24
VRK3-220ENST00000600259 CABYRO75952 493 aa7.29□□□□□ -1.24
VRK3-220ENST00000600259 MYOGP15173 224 aa7.29□□□□□ -1.24
VRK3-220ENST00000600259 POU3F3P20264 500 aaPredicted RBP7.29□□□□□ -1.24
VRK3-220ENST00000600259 CCL23P55773 120 aa7.29□□□□□ -1.24
VRK3-220ENST00000600259 MRPS5P82675 430 aaKnown RBP7.29□□□□□ -1.24
VRK3-220ENST00000600259 RAB30Q15771 203 aa7.29□□□□□ -1.24
VRK3-220ENST00000600259 CCDC85BQ15834 202 aaPredicted RBP7.29□□□□□ -1.24
VRK3-220ENST00000600259 FSCN1Q16658 493 aaKnown RBP7.29□□□□□ -1.24
VRK3-220ENST00000600259 MUM1L1Q5H9M0 696 aa7.29□□□□□ -1.24
VRK3-220ENST00000600259 C20orf194Q5TEA3 1177 aa7.29□□□□□ -1.24
VRK3-220ENST00000600259 IQSEC1Q6DN90 963 aa7.29□□□□□ -1.24
VRK3-220ENST00000600259 CCDC174Q6PII3 467 aa7.29□□□□□ -1.24
VRK3-220ENST00000600259 LRRC47Q8N1G4 583 aaKnown RBP7.29□□□□□ -1.24
VRK3-220ENST00000600259 STAG1Q8WVM7 1258 aa7.29□□□□□ -1.24
VRK3-220ENST00000600259 GMCL1Q96IK5 515 aa7.29□□□□□ -1.24
VRK3-220ENST00000600259 PURBQ96QR8 312 aaKnown RBP7.29□□□□□ -1.24
VRK3-220ENST00000600259 SEZ6LQ9BYH1 1024 aa7.29□□□□□ -1.24
VRK3-220ENST00000600259 HIPK3Q9H422 1215 aa7.29□□□□□ -1.24
VRK3-220ENST00000600259 DCTPP1Q9H773 170 aa7.29□□□□□ -1.24
VRK3-220ENST00000600259 ACAD9Q9H845 621 aa7.29□□□□□ -1.24
VRK3-220ENST00000600259 INCENPQ9NQS7 918 aa7.29□□□□□ -1.24
VRK3-220ENST00000600259 IL17RBQ9NRM6 502 aa7.29□□□□□ -1.24
VRK3-220ENST00000600259 RNF146Q9NTX7 359 aa7.29□□□□□ -1.24
VRK3-220ENST00000600259 CYP39A1Q9NYL5 469 aa7.29□□□□□ -1.24
VRK3-220ENST00000600259 THEGQ9P2T0 379 aa7.29□□□□□ -1.24
VRK3-220ENST00000600259 MSRAQ9UJ68 235 aa7.29□□□□□ -1.24
VRK3-220ENST00000600259 DDX52Q9Y2R4 599 aaKnown RBP eCLIP7.29□□□□□ -1.24
VRK3-220ENST00000600259 PLIN4Q96Q06 1357 aa7.29□□□□□ -1.24
VRK3-220ENST00000600259 RBM47A0AV96 593 aaKnown RBP7.28□□□□□ -1.24
VRK3-220ENST00000600259 ASB14A6NK59 587 aa7.28□□□□□ -1.24
VRK3-220ENST00000600259 ZFYP08048 801 aaPredicted RBP7.28□□□□□ -1.24
VRK3-220ENST00000600259 GNAT2P19087 354 aa7.28□□□□□ -1.24
VRK3-220ENST00000600259 MCCP23508 829 aa7.28□□□□□ -1.24
VRK3-220ENST00000600259 RABGGTBP53611 331 aa7.28□□□□□ -1.24
VRK3-220ENST00000600259 SNAP25P60880 206 aa7.28□□□□□ -1.24
VRK3-220ENST00000600259 PSMC6P62333 389 aa7.28□□□□□ -1.24
VRK3-220ENST00000600259 TFAP4Q01664 338 aa7.28□□□□□ -1.24
VRK3-220ENST00000600259 TKFCQ3LXA3 575 aa7.28□□□□□ -1.24
VRK3-220ENST00000600259 TSHZ3Q63HK5 1081 aa7.28□□□□□ -1.24
VRK3-220ENST00000600259 RCSD1Q6JBY9 416 aa7.28□□□□□ -1.24
VRK3-220ENST00000600259 RASGRP2Q7LDG7 609 aa7.28□□□□□ -1.24
VRK3-220ENST00000600259 OTOP2Q7RTS6 562 aa7.28□□□□□ -1.24
VRK3-220ENST00000600259 TLK2Q86UE8 772 aa7.28□□□□□ -1.24
VRK3-220ENST00000600259 FAM160B2Q86V87 743 aa7.28□□□□□ -1.24
VRK3-220ENST00000600259 ADAMTS19Q8TE59 1207 aa7.28□□□□□ -1.24
VRK3-220ENST00000600259 CHURC1Q8WUH1 139 aa7.28□□□□□ -1.24
VRK3-220ENST00000600259 TRERF1Q96PN7 1200 aa7.28□□□□□ -1.24
VRK3-220ENST00000600259 ALDH8A1Q9H2A2 487 aaPredicted RBP7.28□□□□□ -1.24
VRK3-220ENST00000600259 SLC28A3Q9HAS3 691 aa7.28□□□□□ -1.24
VRK3-220ENST00000600259 HOMER2Q9NSB8 354 aa7.28□□□□□ -1.24
VRK3-220ENST00000600259 PRR12Q9ULL5 1215 aa7.28□□□□□ -1.24
VRK3-220ENST00000600259 RFXAPO00287 272 aa7.27□□□□□ -1.25
VRK3-220ENST00000600259 ARHGEF15O94989 841 aa7.27□□□□□ -1.25
VRK3-220ENST00000600259 FGRP09769 529 aa7.27□□□□□ -1.25
VRK3-220ENST00000600259 ALAS1P13196 640 aa7.27□□□□□ -1.25
VRK3-220ENST00000600259 IGFBP4P22692 258 aa7.27□□□□□ -1.25
VRK3-220ENST00000600259 STAT2P52630 851 aa7.27□□□□□ -1.25
VRK3-220ENST00000600259 PPARAQ07869 468 aa7.27□□□□□ -1.25
VRK3-220ENST00000600259 TTLL4Q14679 1199 aa7.27□□□□□ -1.25
VRK3-220ENST00000600259 DUSP28Q4G0W2 176 aa7.27□□□□□ -1.25
VRK3-220ENST00000600259 ZMYM1Q5SVZ6 1142 aa7.27□□□□□ -1.25
VRK3-220ENST00000600259 BTNL9Q6UXG8 535 aa7.27□□□□□ -1.25
VRK3-220ENST00000600259 KCTD1Q719H9 257 aa7.27□□□□□ -1.25
VRK3-220ENST00000600259 EEPD1Q7L9B9 569 aa7.27□□□□□ -1.25
VRK3-220ENST00000600259 RPUSD2Q8IZ73 545 aaKnown RBP7.27□□□□□ -1.25
VRK3-220ENST00000600259 PI4K2BQ8TCG2 481 aa7.27□□□□□ -1.25
VRK3-220ENST00000600259 SCLYQ96I15 445 aa7.27□□□□□ -1.25
VRK3-220ENST00000600259 NECAB3Q96P71 396 aaPredicted RBP7.27□□□□□ -1.25
VRK3-220ENST00000600259 UHRF1Q96T88 793 aaPredicted RBP7.27□□□□□ -1.25
VRK3-220ENST00000600259 AP5M1Q9H0R1 490 aa7.27□□□□□ -1.25
VRK3-220ENST00000600259 ZNF287Q9HBT7 754 aa7.27□□□□□ -1.25
VRK3-220ENST00000600259 CTDP1Q9Y5B0 961 aaPredicted RBP7.27□□□□□ -1.25
VRK3-220ENST00000600259 PCDHA11Q9Y5I1 949 aa7.27□□□□□ -1.25
VRK3-220ENST00000600259 MTCH2Q9Y6C9 303 aa7.27□□□□□ -1.25
VRK3-220ENST00000600259 MCM3APO60318 1980 aa7.27□□□□□ -1.25
VRK3-220ENST00000600259 XIRP2A4UGR9 3374 aa7.27□□□□□ -1.25
VRK3-220ENST00000600259 PRRC2BQ5JSZ5 2229 aaKnown RBP7.26□□□□□ -1.25
VRK3-220ENST00000600259 EPOPA6NHQ4 379 aa7.26□□□□□ -1.25
VRK3-220ENST00000600259 NMT2O60551 498 aa7.26□□□□□ -1.25
VRK3-220ENST00000600259 APPP05067 770 aa7.26□□□□□ -1.25
VRK3-220ENST00000600259 TSPY3P0CV98 308 aa7.26□□□□□ -1.25
VRK3-220ENST00000600259 TSPY8P0CW00 308 aa7.26□□□□□ -1.25
VRK3-220ENST00000600259 CYP2C9P11712 490 aa7.26□□□□□ -1.25
VRK3-220ENST00000600259 SLC1A4P43007 532 aa7.26□□□□□ -1.25
VRK3-220ENST00000600259 TDO2P48775 406 aa7.26□□□□□ -1.25
VRK3-220ENST00000600259 PURAQ00577 322 aaKnown RBP7.26□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms