RNA–Protein interactions for RNA: ENST00000599848.5

UPF1-207, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 1 (best) BASIC

Gene UPF1, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-207ENST00000599848 CDKL2Q92772 493 aa22.43■■□□□ 1.18
UPF1-207ENST00000599848 TBC1D7Q9P0N9 293 aa22.43■■□□□ 1.18
UPF1-207ENST00000599848 VPS54Q9P1Q0 977 aa22.43■■□□□ 1.18
UPF1-207ENST00000599848 MED7O43513 233 aa22.43■■□□□ 1.18
UPF1-207ENST00000599848 PSAPP07602 524 aa22.43■■□□□ 1.18
UPF1-207ENST00000599848 LONP1P36776 959 aaKnown RBP22.43■■□□□ 1.18
UPF1-207ENST00000599848 STAT2P52630 851 aa22.43■■□□□ 1.18
UPF1-207ENST00000599848 NEDD9Q14511 834 aa22.43■■□□□ 1.18
UPF1-207ENST00000599848 NOLC1Q14978 699 aaKnown RBP eCLIP22.43■■□□□ 1.18
UPF1-207ENST00000599848 NBPF11Q86T75 865 aa22.43■■□□□ 1.18
UPF1-207ENST00000599848 POMGNT1Q8WZA1 660 aa22.43■■□□□ 1.18
UPF1-207ENST00000599848 CLSTN2Q9H4D0 955 aa22.43■■□□□ 1.18
UPF1-207ENST00000599848 KCNH4Q9UQ05 1017 aa22.43■■□□□ 1.18
UPF1-207ENST00000599848 GOLGA8FQ08AF8 430 aa22.42■■□□□ 1.18
UPF1-207ENST00000599848 GOLGA8DPQ0D2H9 430 aa22.42■■□□□ 1.18
UPF1-207ENST00000599848 HS1BP3Q53T59 392 aa22.42■■□□□ 1.18
UPF1-207ENST00000599848 SLC27A3Q5K4L6 730 aa22.42■■□□□ 1.18
UPF1-207ENST00000599848 HDXQ7Z353 690 aa22.42■■□□□ 1.18
UPF1-207ENST00000599848 TCP11Q8WWU5 503 aa22.42■■□□□ 1.18
UPF1-207ENST00000599848 RBSNQ9H1K0 784 aa22.42■■□□□ 1.18
UPF1-207ENST00000599848 PANK4Q9NVE7 773 aa22.42■■□□□ 1.18
UPF1-207ENST00000599848 SNX14Q9Y5W7 946 aa22.42■■□□□ 1.18
UPF1-207ENST00000599848 MFAP3P55082 362 aa22.42■■□□□ 1.18
UPF1-207ENST00000599848 RPGRIP1Q96KN7 1286 aa22.42■■□□□ 1.18
UPF1-207ENST00000599848 TMEM206Q9H813 350 aa22.42■■□□□ 1.18
UPF1-207ENST00000599848 FRMPD2Q68DX3 1309 aaPredicted RBP22.42■■□□□ 1.18
UPF1-207ENST00000599848 MAPKBP1O60336 1514 aa22.42■■□□□ 1.18
UPF1-207ENST00000599848 CEP104O60308 925 aa22.42■■□□□ 1.18
UPF1-207ENST00000599848 GBP1P32455 592 aa22.42■■□□□ 1.18
UPF1-207ENST00000599848 PIK3CAP42336 1068 aa22.42■■□□□ 1.18
UPF1-207ENST00000599848 PAK2Q13177 524 aa22.42■■□□□ 1.18
UPF1-207ENST00000599848 MAP3K21Q5TCX8 1036 aa22.42■■□□□ 1.18
UPF1-207ENST00000599848 MFSD14CQ5VZR4 134 aa22.42■■□□□ 1.18
UPF1-207ENST00000599848 PPP4R1Q8TF05 950 aa22.42■■□□□ 1.18
UPF1-207ENST00000599848 STK17AQ9UEE5 414 aa22.42■■□□□ 1.18
UPF1-207ENST00000599848 ZMYM6O95789 1325 aa22.42■■□□□ 1.18
UPF1-207ENST00000599848 INO80B-WBP1J3KQ70 363 aa22.42■■□□□ 1.18
UPF1-207ENST00000599848 ZNF577Q9BSK1 485 aa22.42■■□□□ 1.18
UPF1-207ENST00000599848 LMNB2Q03252 620 aa22.41■■□□□ 1.18
UPF1-207ENST00000599848 ZNF341Q9BYN7 854 aa22.41■■□□□ 1.18
UPF1-207ENST00000599848 MAN1A1P33908 653 aa22.41■■□□□ 1.18
UPF1-207ENST00000599848 AK8Q96MA6 479 aa22.41■■□□□ 1.18
UPF1-207ENST00000599848 HNRNPDLO14979 420 aaKnown RBP22.41■■□□□ 1.18
UPF1-207ENST00000599848 USP17L8P0C7I0 530 aa22.41■■□□□ 1.18
UPF1-207ENST00000599848 KRT3P12035 628 aa22.41■■□□□ 1.18
UPF1-207ENST00000599848 NT5C1BQ96P26 610 aa22.41■■□□□ 1.18
UPF1-207ENST00000599848 KIF9Q9HAQ2 790 aa22.41■■□□□ 1.18
UPF1-207ENST00000599848 TYW1Q9NV66 732 aaKnown RBP22.41■■□□□ 1.18
UPF1-207ENST00000599848 HOXC10Q9NYD6 342 aa22.41■■□□□ 1.18
UPF1-207ENST00000599848 RNF123Q5XPI4 1314 aa22.41■■□□□ 1.18
UPF1-207ENST00000599848 SSH2Q76I76 1423 aa22.41■■□□□ 1.18
UPF1-207ENST00000599848 ARHGAP6O43182 974 aa22.41■■□□□ 1.18
UPF1-207ENST00000599848 NSFP46459 744 aaKnown RBP22.41■■□□□ 1.18
UPF1-207ENST00000599848 ACCSQ96QU6 501 aa22.41■■□□□ 1.18
UPF1-207ENST00000599848 IFRD2Q12894 506 aaPredicted RBP22.4■■□□□ 1.18
UPF1-207ENST00000599848 NUDT18Q6ZVK8 323 aa22.4■■□□□ 1.18
UPF1-207ENST00000599848 CCDC160A6NGH7 325 aa22.4■■□□□ 1.18
UPF1-207ENST00000599848 MAP3K7O43318 606 aa22.4■■□□□ 1.18
UPF1-207ENST00000599848 ZNF202O95125 648 aa22.4■■□□□ 1.18
UPF1-207ENST00000599848 FASTKD5Q7L8L6 764 aaKnown RBP22.4■■□□□ 1.18
UPF1-207ENST00000599848 MYO1AQ9UBC5 1043 aa22.4■■□□□ 1.18
UPF1-207ENST00000599848 PARD3BQ8TEW8 1205 aa22.4■■□□□ 1.18
UPF1-207ENST00000599848 NOSTRINQ8IVI9 506 aa22.4■■□□□ 1.18
UPF1-207ENST00000599848 FAM135BQ49AJ0 1406 aa22.4■■□□□ 1.18
UPF1-207ENST00000599848 FDX1P10109 184 aa22.39■■□□□ 1.18
UPF1-207ENST00000599848 PPP2R5CQ13362 524 aa22.39■■□□□ 1.18
UPF1-207ENST00000599848 CACNA2D3Q8IZS8 1091 aa22.39■■□□□ 1.18
UPF1-207ENST00000599848 NLRP7Q8WX94 980 aa22.39■■□□□ 1.18
UPF1-207ENST00000599848 RPAP1Q9BWH6 1393 aaPredicted RBP22.39■■□□□ 1.18
UPF1-207ENST00000599848 C4orf50Q6ZRC1 276 aa22.39■■□□□ 1.18
UPF1-207ENST00000599848 FAM227BQ96M60 508 aa22.39■■□□□ 1.18
UPF1-207ENST00000599848 PLEKHG2Q9H7P9 1386 aa22.39■■□□□ 1.17
UPF1-207ENST00000599848 FAM26FQ5R3K3 315 aa22.39■■□□□ 1.17
UPF1-207ENST00000599848 NME8Q8N427 588 aa22.39■■□□□ 1.17
UPF1-207ENST00000599848 APOL6Q9BWW8 343 aa22.39■■□□□ 1.17
UPF1-207ENST00000599848 ANKFY1Q9P2R3 1169 aa22.39■■□□□ 1.17
UPF1-207ENST00000599848 STK25O00506 426 aa22.39■■□□□ 1.17
UPF1-207ENST00000599848 DPYSL4O14531 572 aa22.39■■□□□ 1.17
UPF1-207ENST00000599848 ASPHQ12797 758 aa22.39■■□□□ 1.17
UPF1-207ENST00000599848 RAB44Q7Z6P3 723 aaPredicted RBP22.39■■□□□ 1.17
UPF1-207ENST00000599848 RYBPQ8N488 228 aaPredicted RBP22.39■■□□□ 1.17
UPF1-207ENST00000599848 KRT15P19012 456 aa22.38■■□□□ 1.17
UPF1-207ENST00000599848 LTKP29376 864 aa22.38■■□□□ 1.17
UPF1-207ENST00000599848 KPNA2P52292 529 aaKnown RBP22.38■■□□□ 1.17
UPF1-207ENST00000599848 IRX5P78411 483 aaPredicted RBP22.38■■□□□ 1.17
UPF1-207ENST00000599848 SEPT14Q6ZU15 432 aa22.38■■□□□ 1.17
UPF1-207ENST00000599848 PHKBQ93100 1093 aa22.38■■□□□ 1.17
UPF1-207ENST00000599848 BZW2Q9Y6E2 419 aaKnown RBP22.38■■□□□ 1.17
UPF1-207ENST00000599848 DNAJC21Q5F1R6 531 aaKnown RBP22.38■■□□□ 1.17
UPF1-207ENST00000599848 SPON1Q9HCB6 807 aa22.38■■□□□ 1.17
UPF1-207ENST00000599848 COPRSQ9NQ92 184 aa22.38■■□□□ 1.17
UPF1-207ENST00000599848 RPS6KA4O75676 772 aa22.38■■□□□ 1.17
UPF1-207ENST00000599848 SYDE2Q5VT97 1194 aa22.38■■□□□ 1.17
UPF1-207ENST00000599848 ARHGEF25Q86VW2 580 aa22.38■■□□□ 1.17
UPF1-207ENST00000599848 THEM5Q8N1Q8 247 aa22.38■■□□□ 1.17
UPF1-207ENST00000599848 RNF139Q8WU17 664 aa22.38■■□□□ 1.17
UPF1-207ENST00000599848 LSM14BQ9BX40 385 aaKnown RBP22.38■■□□□ 1.17
UPF1-207ENST00000599848 FTOQ9C0B1 505 aaKnown RBP eCLIP22.38■■□□□ 1.17
UPF1-207ENST00000599848 BAG5Q9UL15 447 aa22.38■■□□□ 1.17
UPF1-207ENST00000599848 FANCCQ00597 558 aa22.38■■□□□ 1.17
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms