RNA–Protein interactions for RNA: ENST00000598938.1

LIG1-216, Transcript of DNA ligase 1, humanhuman

TSL 3

Gene LIG1, Length 377 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-216ENST00000598938 SPZ1Q9BXG8 430 aa21.12■□□□□ 0.97
LIG1-216ENST00000598938 MROH8Q9H579 483 aa21.12■□□□□ 0.97
LIG1-216ENST00000598938 FAM217BQ9NTX9 383 aaPredicted RBP21.12■□□□□ 0.97
LIG1-216ENST00000598938 RBM28Q9NW13 759 aaKnown RBP21.12■□□□□ 0.97
LIG1-216ENST00000598938 TFRCP02786 760 aaKnown RBP21.11■□□□□ 0.97
LIG1-216ENST00000598938 ELNP15502 786 aa21.11■□□□□ 0.97
LIG1-216ENST00000598938 PDIA3P30101 505 aaKnown RBP21.11■□□□□ 0.97
LIG1-216ENST00000598938 METAP2P50579 478 aaKnown RBP eCLIP21.11■□□□□ 0.97
LIG1-216ENST00000598938 PPP2R5BQ15173 497 aa21.11■□□□□ 0.97
LIG1-216ENST00000598938 ANKRD1Q15327 319 aa21.11■□□□□ 0.97
LIG1-216ENST00000598938 CDC37Q16543 378 aaPredicted RBP21.11■□□□□ 0.97
LIG1-216ENST00000598938 GPR153Q6NV75 609 aa21.11■□□□□ 0.97
LIG1-216ENST00000598938 GPR142Q7Z601 462 aa21.11■□□□□ 0.97
LIG1-216ENST00000598938 PLEKHH3Q7Z736 793 aa21.11■□□□□ 0.97
LIG1-216ENST00000598938 CCAR1Q8IX12 1150 aaKnown RBP21.11■□□□□ 0.97
LIG1-216ENST00000598938 SRBD1Q8N5C6 995 aaKnown RBP21.11■□□□□ 0.97
LIG1-216ENST00000598938 SLC17A8Q8NDX2 589 aa21.11■□□□□ 0.97
LIG1-216ENST00000598938 ZNF274Q96GC6 653 aaPredicted RBP21.11■□□□□ 0.97
LIG1-216ENST00000598938 AGBL1Q96MI9 1066 aa21.11■□□□□ 0.97
LIG1-216ENST00000598938 DEFB118Q96PH6 123 aa21.11■□□□□ 0.97
LIG1-216ENST00000598938 NAP1L2Q9ULW6 460 aaPredicted RBP21.11■□□□□ 0.97
LIG1-216ENST00000598938 RIPK3Q9Y572 518 aa21.11■□□□□ 0.97
LIG1-216ENST00000598938 DHX16O60231 1041 aaKnown RBP21.1■□□□□ 0.97
LIG1-216ENST00000598938 CDC27P30260 824 aa21.1■□□□□ 0.97
LIG1-216ENST00000598938 RABEP1Q15276 862 aa21.1■□□□□ 0.97
LIG1-216ENST00000598938 NCAPG2Q86XI2 1143 aa21.1■□□□□ 0.97
LIG1-216ENST00000598938 VAT1LQ9HCJ6 419 aa21.1■□□□□ 0.97
LIG1-216ENST00000598938 PNMA2Q9UL42 364 aa21.1■□□□□ 0.97
LIG1-216ENST00000598938 CCPG1Q9ULG6 757 aa21.1■□□□□ 0.97
LIG1-216ENST00000598938 COL6A3P12111 3177 aa21.09■□□□□ 0.97
LIG1-216ENST00000598938 BMP8BP34820 402 aa21.09■□□□□ 0.97
LIG1-216ENST00000598938 QRICH1Q2TAL8 776 aa21.09■□□□□ 0.97
LIG1-216ENST00000598938 TKFCQ3LXA3 575 aa21.09■□□□□ 0.97
LIG1-216ENST00000598938 DHX30Q7L2E3 1194 aaKnown RBP eCLIP21.09■□□□□ 0.97
LIG1-216ENST00000598938 NECAB2Q7Z6G3 386 aa21.09■□□□□ 0.97
LIG1-216ENST00000598938 LARP6Q9BRS8 491 aaKnown RBP21.09■□□□□ 0.97
LIG1-216ENST00000598938 GJD2Q9UKL4 321 aa21.09■□□□□ 0.97
LIG1-216ENST00000598938 ZBTB5O15062 677 aa21.08■□□□□ 0.97
LIG1-216ENST00000598938 PTPREP23469 700 aa21.08■□□□□ 0.97
LIG1-216ENST00000598938 ADD1P35611 737 aaKnown RBP21.08■□□□□ 0.97
LIG1-216ENST00000598938 FUT2Q10981 343 aa21.08■□□□□ 0.97
LIG1-216ENST00000598938 MORN1Q5T089 497 aa21.08■□□□□ 0.97
LIG1-216ENST00000598938 WDR78Q5VTH9 848 aa21.08■□□□□ 0.97
LIG1-216ENST00000598938 CMTR1Q8N1G2 835 aaKnown RBP21.08■□□□□ 0.97
LIG1-216ENST00000598938 CHST13Q8NET6 341 aa21.08■□□□□ 0.97
LIG1-216ENST00000598938 PIGSQ96S52 555 aa21.08■□□□□ 0.97
LIG1-216ENST00000598938 XRN2Q9H0D6 950 aaKnown RBP eCLIP21.08■□□□□ 0.97
LIG1-216ENST00000598938 CWC22Q9HCG8 908 aaKnown RBP21.08■□□□□ 0.97
LIG1-216ENST00000598938 FBXO40Q9UH90 709 aa21.08■□□□□ 0.97
LIG1-216ENST00000598938 TPCN1Q9ULQ1 816 aa21.08■□□□□ 0.97
LIG1-216ENST00000598938 PLXNB2O15031 1838 aa21.08■□□□□ 0.96
LIG1-216ENST00000598938 ZNF236Q9UL36 1845 aa21.08■□□□□ 0.96
LIG1-216ENST00000598938 CCDC196A0A1B0GTZ2 297 aa21.07■□□□□ 0.96
LIG1-216ENST00000598938 SLC15A5A6NIM6 579 aa21.07■□□□□ 0.96
LIG1-216ENST00000598938 DLL1O00548 723 aa21.07■□□□□ 0.96
LIG1-216ENST00000598938 STRNO43815 780 aa21.07■□□□□ 0.96
LIG1-216ENST00000598938 ALAS1P13196 640 aa21.07■□□□□ 0.96
LIG1-216ENST00000598938 TAL1P17542 331 aaPredicted RBP21.07■□□□□ 0.96
LIG1-216ENST00000598938 SLC4A3P48751 1232 aa21.07■□□□□ 0.96
LIG1-216ENST00000598938 GRB14Q14449 540 aa21.07■□□□□ 0.96
LIG1-216ENST00000598938 ABRAQ8N0Z2 381 aa21.07■□□□□ 0.96
LIG1-216ENST00000598938 IL27Q8NEV9 243 aa21.07■□□□□ 0.96
LIG1-216ENST00000598938 SOCS4Q8WXH5 440 aa21.07■□□□□ 0.96
LIG1-216ENST00000598938 USP6NLQ92738 828 aa21.07■□□□□ 0.96
LIG1-216ENST00000598938 PAWRQ96IZ0 340 aaKnown RBP21.07■□□□□ 0.96
LIG1-216ENST00000598938 GDF15Q99988 308 aa21.07■□□□□ 0.96
LIG1-216ENST00000598938 RNF146Q9NTX7 359 aa21.07■□□□□ 0.96
LIG1-216ENST00000598938 IVNS1ABPQ9Y6Y0 642 aa21.07■□□□□ 0.96
LIG1-216ENST00000598938 CNTNAP5Q8WYK1 1306 aa21.06■□□□□ 0.96
LIG1-216ENST00000598938 PNMA6FA0A0J9YX94 578 aa21.06■□□□□ 0.96
LIG1-216ENST00000598938 SOX1O00570 391 aaPredicted RBP21.06■□□□□ 0.96
LIG1-216ENST00000598938 PPP1R11O60927 126 aaPredicted RBP21.06■□□□□ 0.96
LIG1-216ENST00000598938 HMGCRP04035 888 aa21.06■□□□□ 0.96
LIG1-216ENST00000598938 FBXO11Q86XK2 927 aa21.06■□□□□ 0.96
LIG1-216ENST00000598938 HOMER1Q86YM7 354 aa21.06■□□□□ 0.96
LIG1-216ENST00000598938 RRP36Q96EU6 259 aaKnown RBP21.06■□□□□ 0.96
LIG1-216ENST00000598938 TRERF1Q96PN7 1200 aa21.06■□□□□ 0.96
LIG1-216ENST00000598938 ACAD9Q9H845 621 aa21.06■□□□□ 0.96
LIG1-216ENST00000598938 HOMER2Q9NSB8 354 aa21.06■□□□□ 0.96
LIG1-216ENST00000598938 CUL9Q8IWT3 2517 aa21.06■□□□□ 0.96
LIG1-216ENST00000598938 FCER1AP12319 257 aa21.05■□□□□ 0.96
LIG1-216ENST00000598938 CCT2P78371 535 aaKnown RBP21.05■□□□□ 0.96
LIG1-216ENST00000598938 MUM1L1Q5H9M0 696 aa21.05■□□□□ 0.96
LIG1-216ENST00000598938 CCDC82Q8N4S0 544 aa21.05■□□□□ 0.96
LIG1-216ENST00000598938 NUDT12Q9BQG2 462 aa21.05■□□□□ 0.96
LIG1-216ENST00000598938 AMNQ9BXJ7 453 aa21.05■□□□□ 0.96
LIG1-216ENST00000598938 NCOA5Q9HCD5 579 aaKnown RBP21.05■□□□□ 0.96
LIG1-216ENST00000598938 ABCB11O95342 1321 aa21.04■□□□□ 0.96
LIG1-216ENST00000598938 PFKFB2O60825 505 aa21.04■□□□□ 0.96
LIG1-216ENST00000598938 ADORA2AP29274 412 aa21.04■□□□□ 0.96
LIG1-216ENST00000598938 STK3Q13188 491 aa21.04■□□□□ 0.96
LIG1-216ENST00000598938 NTRK3Q16288 839 aa21.04■□□□□ 0.96
LIG1-216ENST00000598938 USH1GQ495M9 461 aa21.04■□□□□ 0.96
LIG1-216ENST00000598938 CLEC4DQ8WXI8 215 aa21.04■□□□□ 0.96
LIG1-216ENST00000598938 LRCH3Q96II8 777 aa21.04■□□□□ 0.96
LIG1-216ENST00000598938 MMP19Q99542 508 aa21.04■□□□□ 0.96
LIG1-216ENST00000598938 RPTORQ8N122 1335 aa21.04■□□□□ 0.96
LIG1-216ENST00000598938 LARGE1O95461 756 aa21.03■□□□□ 0.96
LIG1-216ENST00000598938 MNX1P50219 401 aaPredicted RBP21.03■□□□□ 0.96
LIG1-216ENST00000598938 MAP2K5Q13163 448 aa21.03■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms