RNA–Protein interactions for RNA: ENST00000598553.1

VRK3-214, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 595 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-214ENST00000598553 BMP8BP34820 402 aa12.55□□□□□ -0.4
VRK3-214ENST00000598553 CCDC144BQ3MJ40 725 aa12.55□□□□□ -0.4
VRK3-214ENST00000598553 NSMFQ6X4W1 530 aa12.55□□□□□ -0.4
VRK3-214ENST00000598553 ZNF467Q7Z7K2 595 aaPredicted RBP12.55□□□□□ -0.4
VRK3-214ENST00000598553 FBXO16Q8IX29 292 aaPredicted RBP12.55□□□□□ -0.4
VRK3-214ENST00000598553 ENAHQ8N8S7 591 aaPredicted RBP12.55□□□□□ -0.4
VRK3-214ENST00000598553 ARRDC4Q8NCT1 418 aa12.55□□□□□ -0.4
VRK3-214ENST00000598553 TRIM43Q96BQ3 446 aaPredicted RBP12.55□□□□□ -0.4
VRK3-214ENST00000598553 CYP39A1Q9NYL5 469 aa12.55□□□□□ -0.4
VRK3-214ENST00000598553 ZSWIM5Q9P217 1185 aa12.55□□□□□ -0.4
VRK3-214ENST00000598553 NRBP1Q9UHY1 535 aa12.55□□□□□ -0.4
VRK3-214ENST00000598553 CNPY2Q9Y2B0 182 aa12.55□□□□□ -0.4
VRK3-214ENST00000598553 GBF1Q92538 1859 aa12.55□□□□□ -0.4
VRK3-214ENST00000598553 DOCK5Q9H7D0 1870 aa12.55□□□□□ -0.4
VRK3-214ENST00000598553 SZT2Q5T011 3432 aa12.55□□□□□ -0.4
VRK3-214ENST00000598553 BEX3Q00994 111 aa12.54□□□□□ -0.4
VRK3-214ENST00000598553 TLE2Q04725 743 aa12.54□□□□□ -0.4
VRK3-214ENST00000598553 BAATQ14032 418 aaPredicted RBP12.54□□□□□ -0.4
VRK3-214ENST00000598553 Q7L0L9 218 aa12.54□□□□□ -0.4
VRK3-214ENST00000598553 STAG2Q8N3U4 1231 aa12.54□□□□□ -0.4
VRK3-214ENST00000598553 TBC1D5Q92609 795 aa12.54□□□□□ -0.4
VRK3-214ENST00000598553 ESR2Q92731 530 aa12.54□□□□□ -0.4
VRK3-214ENST00000598553 UBE2OQ9C0C9 1292 aaKnown RBP12.54□□□□□ -0.4
VRK3-214ENST00000598553 PRDM5Q9NQX1 630 aaPredicted RBP12.54□□□□□ -0.4
VRK3-214ENST00000598553 FBXO40Q9UH90 709 aa12.54□□□□□ -0.4
VRK3-214ENST00000598553 TNKSO95271 1327 aa12.54□□□□□ -0.4
VRK3-214ENST00000598553 MYH7BA7E2Y1 1941 aa12.54□□□□□ -0.4
VRK3-214ENST00000598553 CYP21A2P08686 494 aa12.53□□□□□ -0.4
VRK3-214ENST00000598553 SMPD1P17405 629 aa12.53□□□□□ -0.4
VRK3-214ENST00000598553 ACLYP53396 1101 aa12.53□□□□□ -0.4
VRK3-214ENST00000598553 EPHB4P54760 987 aa12.53□□□□□ -0.4
VRK3-214ENST00000598553 SEC23AQ15436 765 aa12.53□□□□□ -0.4
VRK3-214ENST00000598553 KCNA10Q16322 511 aa12.53□□□□□ -0.4
VRK3-214ENST00000598553 PPP4R3BQ5MIZ7 849 aa12.53□□□□□ -0.4
VRK3-214ENST00000598553 C9orf50Q5SZB4 431 aa12.53□□□□□ -0.4
VRK3-214ENST00000598553 TAPT1Q6NXT6 567 aa12.53□□□□□ -0.4
VRK3-214ENST00000598553 MSL3Q8N5Y2 521 aaKnown RBP12.53□□□□□ -0.4
VRK3-214ENST00000598553 PNMA1Q8ND90 353 aa12.53□□□□□ -0.4
VRK3-214ENST00000598553 BADQ92934 168 aa12.53□□□□□ -0.4
VRK3-214ENST00000598553 ZSCAN10Q96SZ4 725 aaPredicted RBP12.53□□□□□ -0.4
VRK3-214ENST00000598553 UPF3AQ9H1J1 476 aaKnown RBP12.53□□□□□ -0.4
VRK3-214ENST00000598553 COL20A1Q9P218 1284 aa12.53□□□□□ -0.4
VRK3-214ENST00000598553 GNEQ9Y223 722 aaKnown RBP12.53□□□□□ -0.4
VRK3-214ENST00000598553 SCN5AQ14524 2016 aa12.53□□□□□ -0.4
VRK3-214ENST00000598553 A0A1W2PPC1 479 aa12.52□□□□□ -0.41
VRK3-214ENST00000598553 DUSP11O75319 330 aaKnown RBP12.52□□□□□ -0.41
VRK3-214ENST00000598553 FDX1P10109 184 aa12.52□□□□□ -0.41
VRK3-214ENST00000598553 MFAP1P55081 439 aaKnown RBP12.52□□□□□ -0.41
VRK3-214ENST00000598553 TKFCQ3LXA3 575 aa12.52□□□□□ -0.41
VRK3-214ENST00000598553 USH1GQ495M9 461 aa12.52□□□□□ -0.41
VRK3-214ENST00000598553 CHST3Q7LGC8 479 aa12.52□□□□□ -0.41
VRK3-214ENST00000598553 TDHQ8IZJ6 230 aa12.52□□□□□ -0.41
VRK3-214ENST00000598553 PPP1R13LQ8WUF5 828 aa12.52□□□□□ -0.41
VRK3-214ENST00000598553 ANKS1AQ92625 1134 aa12.52□□□□□ -0.41
VRK3-214ENST00000598553 TTC14Q96N46 770 aa12.52□□□□□ -0.41
VRK3-214ENST00000598553 ABHD16BQ9H3Z7 469 aa12.52□□□□□ -0.41
VRK3-214ENST00000598553 RNF41Q9H4P4 317 aaPredicted RBP12.52□□□□□ -0.41
VRK3-214ENST00000598553 FAM184BQ9ULE4 1060 aa12.52□□□□□ -0.41
VRK3-214ENST00000598553 SCN10AQ9Y5Y9 1956 aa12.51□□□□□ -0.41
VRK3-214ENST00000598553 HIP1O00291 1037 aa12.51□□□□□ -0.41
VRK3-214ENST00000598553 SGSM2O43147 1006 aa12.51□□□□□ -0.41
VRK3-214ENST00000598553 PQBP1O60828 265 aaKnown RBP12.51□□□□□ -0.41
VRK3-214ENST00000598553 PPP1R11O60927 126 aaPredicted RBP12.51□□□□□ -0.41
VRK3-214ENST00000598553 C6orf222P0C671 652 aaPredicted RBP12.51□□□□□ -0.41
VRK3-214ENST00000598553 PCP11498 1178 aaKnown RBP12.51□□□□□ -0.41
VRK3-214ENST00000598553 CALML3P27482 149 aa12.51□□□□□ -0.41
VRK3-214ENST00000598553 ALDH5A1P51649 535 aaPredicted RBP12.51□□□□□ -0.41
VRK3-214ENST00000598553 GJA9P57773 515 aa12.51□□□□□ -0.41
VRK3-214ENST00000598553 ANTXR2P58335 489 aa12.51□□□□□ -0.41
VRK3-214ENST00000598553 CDC37Q16543 378 aaPredicted RBP12.51□□□□□ -0.41
VRK3-214ENST00000598553 IMMTQ16891 758 aaKnown RBP12.51□□□□□ -0.41
VRK3-214ENST00000598553 RNF180Q86T96 592 aa12.51□□□□□ -0.41
VRK3-214ENST00000598553 DGKHQ86XP1 1220 aa12.51□□□□□ -0.41
VRK3-214ENST00000598553 MORC4Q8TE76 937 aa12.51□□□□□ -0.41
VRK3-214ENST00000598553 GPHNQ9NQX3 736 aaPredicted RBP12.51□□□□□ -0.41
VRK3-214ENST00000598553 RAD50Q92878 1312 aa12.51□□□□□ -0.41
VRK3-214ENST00000598553 LAMA3Q16787 3333 aa12.51□□□□□ -0.41
VRK3-214ENST00000598553 PTPDC1A2A3K4 754 aa12.5□□□□□ -0.41
VRK3-214ENST00000598553 ASGR1P07306 291 aa12.5□□□□□ -0.41
VRK3-214ENST00000598553 CST5P28325 142 aaPredicted RBP12.5□□□□□ -0.41
VRK3-214ENST00000598553 RPS6P62753 249 aaKnown RBP12.5□□□□□ -0.41
VRK3-214ENST00000598553 FAAP100Q0VG06 881 aa12.5□□□□□ -0.41
VRK3-214ENST00000598553 SHHQ15465 462 aa12.5□□□□□ -0.41
VRK3-214ENST00000598553 QRICH1Q2TAL8 776 aa12.5□□□□□ -0.41
VRK3-214ENST00000598553 C1orf53Q5VUE5 145 aa12.5□□□□□ -0.41
VRK3-214ENST00000598553 ADGRF4Q8IZF3 695 aa12.5□□□□□ -0.41
VRK3-214ENST00000598553 COPS5Q92905 334 aa12.5□□□□□ -0.41
VRK3-214ENST00000598553 STARD7Q9NQZ5 370 aa12.5□□□□□ -0.41
VRK3-214ENST00000598553 GRIN2DO15399 1336 aa12.5□□□□□ -0.41
VRK3-214ENST00000598553 WDR19Q8NEZ3 1342 aa12.49□□□□□ -0.41
VRK3-214ENST00000598553 OPLAHO14841 1288 aa12.49□□□□□ -0.41
VRK3-214ENST00000598553 ARIH2O95376 493 aa12.49□□□□□ -0.41
VRK3-214ENST00000598553 CLTBP09497 229 aa12.49□□□□□ -0.41
VRK3-214ENST00000598553 PSMC6P62333 389 aa12.49□□□□□ -0.41
VRK3-214ENST00000598553 NKX3-2P78367 333 aa12.49□□□□□ -0.41
VRK3-214ENST00000598553 TNFAIP2Q03169 654 aa12.49□□□□□ -0.41
VRK3-214ENST00000598553 CXCL17Q6UXB2 119 aa12.49□□□□□ -0.41
VRK3-214ENST00000598553 TLK2Q86UE8 772 aa12.49□□□□□ -0.41
VRK3-214ENST00000598553 KAT14Q9H8E8 782 aa12.49□□□□□ -0.41
VRK3-214ENST00000598553 JMJD4Q9H9V9 463 aa12.49□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms