RNA–Protein interactions for RNA: ENST00000597172.5

TRIM28-208, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 577 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-208ENST00000597172 STX8Q9UNK0 236 aa11.01□□□□□ -0.65
TRIM28-208ENST00000597172 AGTPBP1Q9UPW5 1226 aa11.01□□□□□ -0.65
TRIM28-208ENST00000597172 PLXNB2O15031 1838 aa11□□□□□ -0.65
TRIM28-208ENST00000597172 PLXNA1Q9UIW2 1896 aa11□□□□□ -0.65
TRIM28-208ENST00000597172 GREB1LQ9C091 1923 aaPredicted RBP11□□□□□ -0.65
TRIM28-208ENST00000597172 ASNSP08243 561 aa11□□□□□ -0.65
TRIM28-208ENST00000597172 PTPRAP18433 802 aa11□□□□□ -0.65
TRIM28-208ENST00000597172 CCT2P78371 535 aaKnown RBP11□□□□□ -0.65
TRIM28-208ENST00000597172 ICA1Q05084 483 aa11□□□□□ -0.65
TRIM28-208ENST00000597172 SCRN1Q12765 414 aa11□□□□□ -0.65
TRIM28-208ENST00000597172 BECN1Q14457 450 aa11□□□□□ -0.65
TRIM28-208ENST00000597172 SCYL3Q8IZE3 742 aa11□□□□□ -0.65
TRIM28-208ENST00000597172 ZNF654Q8IZM8 581 aa11□□□□□ -0.65
TRIM28-208ENST00000597172 ACER1Q8TDN7 264 aa11□□□□□ -0.65
TRIM28-208ENST00000597172 SOCS4Q8WXH5 440 aa11□□□□□ -0.65
TRIM28-208ENST00000597172 HERVK_113Q902F9 699 aa11□□□□□ -0.65
TRIM28-208ENST00000597172 LPAR1Q92633 364 aa11□□□□□ -0.65
TRIM28-208ENST00000597172 PBX4Q9BYU1 374 aa11□□□□□ -0.65
TRIM28-208ENST00000597172 KAT14Q9H8E8 782 aa11□□□□□ -0.65
TRIM28-208ENST00000597172 SH2B1Q9NRF2 756 aaPredicted RBP11□□□□□ -0.65
TRIM28-208ENST00000597172 SLC12A7Q9Y666 1083 aa11□□□□□ -0.65
TRIM28-208ENST00000597172 ATRXP46100 2492 aa11□□□□□ -0.65
TRIM28-208ENST00000597172 CHD7Q9P2D1 2997 aa10.99□□□□□ -0.65
TRIM28-208ENST00000597172 USP34Q70CQ2 3546 aa10.99□□□□□ -0.65
TRIM28-208ENST00000597172 ZBTB43O43298 467 aa10.99□□□□□ -0.65
TRIM28-208ENST00000597172 DTNBO60941 627 aa10.99□□□□□ -0.65
TRIM28-208ENST00000597172 RXRAP19793 462 aa10.99□□□□□ -0.65
TRIM28-208ENST00000597172 ITGB8P26012 769 aa10.99□□□□□ -0.65
TRIM28-208ENST00000597172 CDC27P30260 824 aa10.99□□□□□ -0.65
TRIM28-208ENST00000597172 ADD1P35611 737 aaKnown RBP10.99□□□□□ -0.65
TRIM28-208ENST00000597172 ATP2B2Q01814 1243 aa10.99□□□□□ -0.65
TRIM28-208ENST00000597172 CCL14Q16627 93 aa10.99□□□□□ -0.65
TRIM28-208ENST00000597172 KIAA1755Q5JYT7 1200 aa10.99□□□□□ -0.65
TRIM28-208ENST00000597172 TREML2Q5T2D2 321 aa10.99□□□□□ -0.65
TRIM28-208ENST00000597172 CATIPQ7Z7H3 387 aa10.99□□□□□ -0.65
TRIM28-208ENST00000597172 FANCBQ8NB91 859 aa10.99□□□□□ -0.65
TRIM28-208ENST00000597172 PNMA1Q8ND90 353 aa10.99□□□□□ -0.65
TRIM28-208ENST00000597172 IPO9Q96P70 1041 aaKnown RBP10.99□□□□□ -0.65
TRIM28-208ENST00000597172 SLKQ9H2G2 1235 aaPredicted RBP10.99□□□□□ -0.65
TRIM28-208ENST00000597172 NCOA5Q9HCD5 579 aaKnown RBP10.99□□□□□ -0.65
TRIM28-208ENST00000597172 NAP1L2Q9ULW6 460 aaPredicted RBP10.99□□□□□ -0.65
TRIM28-208ENST00000597172 RLFQ13129 1914 aa10.99□□□□□ -0.65
TRIM28-208ENST00000597172 REV3LO60673 3130 aa10.99□□□□□ -0.65
TRIM28-208ENST00000597172 TRIM75PA6NK02 468 aa10.98□□□□□ -0.65
TRIM28-208ENST00000597172 GOLGA8BA8MQT2 603 aa10.98□□□□□ -0.65
TRIM28-208ENST00000597172 USP17L5A8MUK1 530 aa10.98□□□□□ -0.65
TRIM28-208ENST00000597172 GRXCR1A8MXD5 290 aa10.98□□□□□ -0.65
TRIM28-208ENST00000597172 MSCO60682 206 aa10.98□□□□□ -0.65
TRIM28-208ENST00000597172 DDAH1O94760 285 aa10.98□□□□□ -0.65
TRIM28-208ENST00000597172 CTDNEP1O95476 244 aa10.98□□□□□ -0.65
TRIM28-208ENST00000597172 SNHG28P0DPA3 235 aa10.98□□□□□ -0.65
TRIM28-208ENST00000597172 METAP2P50579 478 aaKnown RBP eCLIP10.98□□□□□ -0.652e-7■□□□□ 8.9
TRIM28-208ENST00000597172 RCAN1P53805 252 aa10.98□□□□□ -0.65
TRIM28-208ENST00000597172 TLE2Q04725 743 aa10.98□□□□□ -0.65
TRIM28-208ENST00000597172 FPGSQ05932 587 aa10.98□□□□□ -0.65
TRIM28-208ENST00000597172 SNX17Q15036 470 aa10.98□□□□□ -0.65
TRIM28-208ENST00000597172 NTRK3Q16288 839 aa10.98□□□□□ -0.65
TRIM28-208ENST00000597172 CSPP1Q1MSJ5 1256 aa10.98□□□□□ -0.65
TRIM28-208ENST00000597172 PPP4R3BQ5MIZ7 849 aa10.98□□□□□ -0.65
TRIM28-208ENST00000597172 GJC2Q5T442 439 aaPredicted RBP10.98□□□□□ -0.65
TRIM28-208ENST00000597172 SYNE3Q6ZMZ3 975 aa10.98□□□□□ -0.65
TRIM28-208ENST00000597172 RASGRP2Q7LDG7 609 aa10.98□□□□□ -0.65
TRIM28-208ENST00000597172 MICU3Q86XE3 530 aa10.98□□□□□ -0.65
TRIM28-208ENST00000597172 CCDC83Q8IWF9 413 aa10.98□□□□□ -0.65
TRIM28-208ENST00000597172 CCDC144CPQ8IYA2 1237 aa10.98□□□□□ -0.65
TRIM28-208ENST00000597172 LRRC47Q8N1G4 583 aaKnown RBP10.98□□□□□ -0.65
TRIM28-208ENST00000597172 NUP133Q8WUM0 1156 aa10.98□□□□□ -0.65
TRIM28-208ENST00000597172 GTF3C6Q969F1 213 aa10.98□□□□□ -0.65
TRIM28-208ENST00000597172 CHMP4CQ96CF2 233 aa10.98□□□□□ -0.65
TRIM28-208ENST00000597172 MAP3K14Q99558 947 aa10.98□□□□□ -0.65
TRIM28-208ENST00000597172 WDR18Q9BV38 432 aa10.98□□□□□ -0.65
TRIM28-208ENST00000597172 DDX20Q9UHI6 824 aaKnown RBP10.98□□□□□ -0.65
TRIM28-208ENST00000597172 TMX2Q9Y320 296 aa10.98□□□□□ -0.65
TRIM28-208ENST00000597172 NID2Q14112 1375 aa10.98□□□□□ -0.65
TRIM28-208ENST00000597172 PTPRFP10586 1907 aa10.97□□□□□ -0.65
TRIM28-208ENST00000597172 PALM3A6NDB9 673 aaPredicted RBP10.97□□□□□ -0.65
TRIM28-208ENST00000597172 GOLGA8AA7E2F4 631 aa10.97□□□□□ -0.65
TRIM28-208ENST00000597172 F5H6K3 240 aa10.97□□□□□ -0.65
TRIM28-208ENST00000597172 CALM1P0DP23 149 aa10.97□□□□□ -0.65
TRIM28-208ENST00000597172 CALM2P0DP24 149 aa10.97□□□□□ -0.65
TRIM28-208ENST00000597172 CALM3P0DP25 149 aa10.97□□□□□ -0.65
TRIM28-208ENST00000597172 RAG1P15918 1043 aa10.97□□□□□ -0.65
TRIM28-208ENST00000597172 RGS2P41220 211 aa10.97□□□□□ -0.65
TRIM28-208ENST00000597172 KLRC3Q07444 240 aa10.97□□□□□ -0.65
TRIM28-208ENST00000597172 GRM4Q14833 912 aa10.97□□□□□ -0.65
TRIM28-208ENST00000597172 STAG2Q8N3U4 1231 aa10.97□□□□□ -0.65
TRIM28-208ENST00000597172 SPRYD3Q8NCJ5 442 aa10.97□□□□□ -0.65
TRIM28-208ENST00000597172 ARRDC4Q8NCT1 418 aa10.97□□□□□ -0.65
TRIM28-208ENST00000597172 GMCL1P1Q8NEA9 526 aa10.97□□□□□ -0.65
TRIM28-208ENST00000597172 USP6NLQ92738 828 aa10.97□□□□□ -0.65
TRIM28-208ENST00000597172 FOXD4L1Q9NU39 408 aa10.97□□□□□ -0.65
TRIM28-208ENST00000597172 MAD2L2Q9UI95 211 aa10.97□□□□□ -0.65
TRIM28-208ENST00000597172 MSRAQ9UJ68 235 aa10.97□□□□□ -0.65
TRIM28-208ENST00000597172 SYNPO2Q9UMS6 1093 aa10.97□□□□□ -0.65
TRIM28-208ENST00000597172 COG5Q9UP83 839 aa10.97□□□□□ -0.65
TRIM28-208ENST00000597172 MTMR7Q9Y216 660 aa10.97□□□□□ -0.65
TRIM28-208ENST00000597172 MYH8P13535 1937 aa10.97□□□□□ -0.65
TRIM28-208ENST00000597172 FRMPD3Q5JV73 1810 aa10.96□□□□□ -0.65
TRIM28-208ENST00000597172 NDUFB10O96000 172 aa10.96□□□□□ -0.65
TRIM28-208ENST00000597172 PDHBP11177 359 aa10.96□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms