RNA–Protein interactions for RNA: ENST00000594759.5

LIG1-207, Transcript of DNA ligase 1, humanhuman

TSL 1 (best)

Gene LIG1, Length 4,102 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-207ENST00000594759 LRWD1Q9UFC0 647 aa13.54□□□□□ -0.24
LIG1-207ENST00000594759 C15orf41Q9Y2V0 281 aa13.54□□□□□ -0.24
LIG1-207ENST00000594759 QRICH2Q9H0J4 1663 aa13.53□□□□□ -0.24
LIG1-207ENST00000594759 UBAP1LF5GYI3 381 aa13.53□□□□□ -0.24
LIG1-207ENST00000594759 H0Y3Z8 333 aa13.53□□□□□ -0.24
LIG1-207ENST00000594759 DNM2P50570 870 aa13.53□□□□□ -0.24
LIG1-207ENST00000594759 MAGOHP61326 146 aaKnown RBP13.53□□□□□ -0.24
LIG1-207ENST00000594759 CROCCP2Q86T23 111 aa13.53□□□□□ -0.24
LIG1-207ENST00000594759 MAGOHBQ96A72 148 aaKnown RBP13.53□□□□□ -0.24
LIG1-207ENST00000594759 TCHPQ9BT92 498 aa13.53□□□□□ -0.24
LIG1-207ENST00000594759 NACAP1Q9BZK3 213 aa13.53□□□□□ -0.24
LIG1-207ENST00000594759 TUBE1Q9UJT0 475 aa13.53□□□□□ -0.24
LIG1-207ENST00000594759 hCG_2014768A0A024R1R8 64 aa13.53□□□□□ -0.24
LIG1-207ENST00000594759 CCDC189A1A4V9 331 aa13.53□□□□□ -0.24
LIG1-207ENST00000594759 FXR1P51114 621 aaKnown RBP eCLIP13.53□□□□□ -0.24
LIG1-207ENST00000594759 NR1I3Q14994 352 aa13.53□□□□□ -0.24
LIG1-207ENST00000594759 GBP7Q8N8V2 638 aaPredicted RBP13.53□□□□□ -0.24
LIG1-207ENST00000594759 ANKRD42Q8N9B4 389 aa13.53□□□□□ -0.24
LIG1-207ENST00000594759 ZNF483Q8TF39 744 aaPredicted RBP13.53□□□□□ -0.24
LIG1-207ENST00000594759 EEF2KMTQ96G04 330 aa13.53□□□□□ -0.24
LIG1-207ENST00000594759 ZNF594Q96JF6 807 aaPredicted RBP13.53□□□□□ -0.24
LIG1-207ENST00000594759 EXOC1Q9NV70 894 aa13.53□□□□□ -0.24
LIG1-207ENST00000594759 PPFIA2O75334 1257 aa13.53□□□□□ -0.24
LIG1-207ENST00000594759 MOCS3O95396 460 aa13.53□□□□□ -0.24
LIG1-207ENST00000594759 TMOD1P28289 359 aa13.53□□□□□ -0.24
LIG1-207ENST00000594759 CDC25AP30304 524 aa13.53□□□□□ -0.24
LIG1-207ENST00000594759 ZNF131P52739 623 aa13.53□□□□□ -0.24
LIG1-207ENST00000594759 NLRP5P59047 1200 aa13.53□□□□□ -0.24
LIG1-207ENST00000594759 PPARAQ07869 468 aa13.53□□□□□ -0.24
LIG1-207ENST00000594759 DDB1Q16531 1140 aa13.53□□□□□ -0.24
LIG1-207ENST00000594759 DAAM2Q86T65 1068 aa13.53□□□□□ -0.24
LIG1-207ENST00000594759 MFN1Q8IWA4 741 aa13.53□□□□□ -0.24
LIG1-207ENST00000594759 TEX9Q8N6V9 391 aa13.53□□□□□ -0.24
LIG1-207ENST00000594759 DDX55Q8NHQ9 600 aaKnown RBP eCLIP13.53□□□□□ -0.24
LIG1-207ENST00000594759 MCUR1Q96AQ8 359 aa13.53□□□□□ -0.24
LIG1-207ENST00000594759 TSG101Q99816 390 aa13.53□□□□□ -0.24
LIG1-207ENST00000594759 RBM5P52756 815 aaKnown RBP eCLIP13.52□□□□□ -0.24
LIG1-207ENST00000594759 MRPS35P82673 323 aaKnown RBP13.52□□□□□ -0.24
LIG1-207ENST00000594759 KLC1Q07866 573 aa13.52□□□□□ -0.24
LIG1-207ENST00000594759 SEPT6Q14141 434 aa13.52□□□□□ -0.24
LIG1-207ENST00000594759 SYCP3Q8IZU3 236 aa13.52□□□□□ -0.24
LIG1-207ENST00000594759 DDX23Q9BUQ8 820 aaKnown RBP13.52□□□□□ -0.24
LIG1-207ENST00000594759 ALDH8A1Q9H2A2 487 aaPredicted RBP13.52□□□□□ -0.24
LIG1-207ENST00000594759 CCDC169A6NNP5 214 aa13.52□□□□□ -0.25
LIG1-207ENST00000594759 BTBD18B2RXH4 712 aa13.52□□□□□ -0.25
LIG1-207ENST00000594759 IRF6O14896 467 aa13.52□□□□□ -0.25
LIG1-207ENST00000594759 TPP2P29144 1249 aaPredicted RBP13.52□□□□□ -0.25
LIG1-207ENST00000594759 RPS6KA3P51812 740 aa13.52□□□□□ -0.25
LIG1-207ENST00000594759 RAD23BP54727 409 aa13.52□□□□□ -0.25
LIG1-207ENST00000594759 KRT31Q15323 416 aa13.52□□□□□ -0.25
LIG1-207ENST00000594759 RTN1Q16799 776 aa13.52□□□□□ -0.25
LIG1-207ENST00000594759 CHP1Q99653 195 aa13.52□□□□□ -0.25
LIG1-207ENST00000594759 DPH5Q9H2P9 285 aa13.52□□□□□ -0.25
LIG1-207ENST00000594759 CAMSAP1Q5T5Y3 1602 aa13.52□□□□□ -0.25
LIG1-207ENST00000594759 PTPRMP28827 1452 aa13.52□□□□□ -0.25
LIG1-207ENST00000594759 A0A1B0GTH6 734 aa13.52□□□□□ -0.25
LIG1-207ENST00000594759 BICDL2A1A5D9 508 aa13.52□□□□□ -0.25
LIG1-207ENST00000594759 CCT8L1PA6NM43 557 aa13.52□□□□□ -0.25
LIG1-207ENST00000594759 OPHN1O60890 802 aa13.52□□□□□ -0.25
LIG1-207ENST00000594759 MMEP08473 750 aa13.52□□□□□ -0.25
LIG1-207ENST00000594759 HSPD1P10809 573 aaKnown RBP13.52□□□□□ -0.25
LIG1-207ENST00000594759 ZFYVE27Q5T4F4 411 aa13.52□□□□□ -0.25
LIG1-207ENST00000594759 FAM207AQ9NSI2 230 aaPredicted RBP13.52□□□□□ -0.25
LIG1-207ENST00000594759 CTTNBP2NLQ9P2B4 639 aa13.52□□□□□ -0.25
LIG1-207ENST00000594759 ANGEL1Q9UNK9 670 aaKnown RBP13.52□□□□□ -0.25
LIG1-207ENST00000594759 ZMYM6O95789 1325 aa13.52□□□□□ -0.25
LIG1-207ENST00000594759 PNPLA6Q8IY17 1366 aa13.51□□□□□ -0.25
LIG1-207ENST00000594759 H7C1D1 291 aa13.51□□□□□ -0.25
LIG1-207ENST00000594759 KCNK3O14649 394 aa13.51□□□□□ -0.25
LIG1-207ENST00000594759 FMR1Q06787 632 aaKnown RBP eCLIP13.51□□□□□ -0.257e-8■■□□□ 12.6
LIG1-207ENST00000594759 TMEM154Q6P9G4 183 aa13.51□□□□□ -0.25
LIG1-207ENST00000594759 SPATA24Q86W54 205 aa13.51□□□□□ -0.25
LIG1-207ENST00000594759 C3orf20Q8ND61 904 aa13.51□□□□□ -0.25
LIG1-207ENST00000594759 UHMK1Q8TAS1 419 aaKnown RBP13.51□□□□□ -0.25
LIG1-207ENST00000594759 ZHX3Q9H4I2 956 aa13.51□□□□□ -0.25
LIG1-207ENST00000594759 NHEJ1Q9H9Q4 299 aaPredicted RBP13.51□□□□□ -0.25
LIG1-207ENST00000594759 SDAD1Q9NVU7 687 aaKnown RBP eCLIP13.51□□□□□ -0.25
LIG1-207ENST00000594759 ACTN4O43707 911 aaKnown RBP13.51□□□□□ -0.25
LIG1-207ENST00000594759 EHHADHQ08426 723 aa13.51□□□□□ -0.25
LIG1-207ENST00000594759 TMED1Q13445 227 aa13.51□□□□□ -0.25
LIG1-207ENST00000594759 ZNF174Q15697 407 aa13.51□□□□□ -0.25
LIG1-207ENST00000594759 DNAJC10Q8IXB1 793 aa13.51□□□□□ -0.25
LIG1-207ENST00000594759 GSDMAQ96QA5 445 aa13.51□□□□□ -0.25
LIG1-207ENST00000594759 DSCC1Q9BVC3 393 aa13.51□□□□□ -0.25
LIG1-207ENST00000594759 RNF14Q9UBS8 474 aa13.51□□□□□ -0.25
LIG1-207ENST00000594759 BIN2Q9UBW5 565 aaPredicted RBP13.51□□□□□ -0.25
LIG1-207ENST00000594759 ANAPC4Q9UJX5 808 aa13.51□□□□□ -0.25
LIG1-207ENST00000594759 NEXMIFQ5QGS0 1516 aa13.51□□□□□ -0.25
LIG1-207ENST00000594759 MINDY4BA8MYZ0 360 aa13.51□□□□□ -0.25
LIG1-207ENST00000594759 SASH1O94885 1247 aa13.51□□□□□ -0.25
LIG1-207ENST00000594759 PHKG2P15735 406 aa13.51□□□□□ -0.25
LIG1-207ENST00000594759 PDE4BQ07343 736 aa13.51□□□□□ -0.25
LIG1-207ENST00000594759 PHLDB3Q6NSJ2 640 aa13.51□□□□□ -0.25
LIG1-207ENST00000594759 RRAGAQ7L523 313 aa13.51□□□□□ -0.25
LIG1-207ENST00000594759 NOSTRINQ8IVI9 506 aa13.51□□□□□ -0.25
LIG1-207ENST00000594759 VPS52Q8N1B4 723 aa13.51□□□□□ -0.25
LIG1-207ENST00000594759 RIMBP3CA6NJZ7 1639 aa13.51□□□□□ -0.25
LIG1-207ENST00000594759 RIMBP3BA6NNM3 1639 aa13.51□□□□□ -0.25
LIG1-207ENST00000594759 RIMBP3Q9UFD9 1639 aa13.51□□□□□ -0.25
LIG1-207ENST00000594759 KDRP35968 1356 aa13.51□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms