RNA–Protein interactions for RNA: ENST00000594661.5

PNKP-204, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 2

Gene PNKP, Length 2,111 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-204ENST00000594661 DPCR1Q3MIW9 517 aa17.32■□□□□ 0.36
PNKP-204ENST00000594661 JAKMIP3Q5VZ66 844 aa17.32■□□□□ 0.36
PNKP-204ENST00000594661 USP17L2Q6R6M4 530 aa17.32■□□□□ 0.36
PNKP-204ENST00000594661 CARD6Q9BX69 1037 aa17.32■□□□□ 0.36
PNKP-204ENST00000594661 ATF5Q9Y2D1 282 aaPredicted RBP17.32■□□□□ 0.36
PNKP-204ENST00000594661 MYO3BQ8WXR4 1341 aa17.32■□□□□ 0.36
PNKP-204ENST00000594661 KLRF2D3W0D1 207 aa17.31■□□□□ 0.36
PNKP-204ENST00000594661 NLRP5P59047 1200 aa17.31■□□□□ 0.36
PNKP-204ENST00000594661 CFAP100Q494V2 611 aa17.31■□□□□ 0.36
PNKP-204ENST00000594661 DNAJC21Q5F1R6 531 aaKnown RBP17.31■□□□□ 0.36
PNKP-204ENST00000594661 TYW1BQ6NUM6 668 aa17.31■□□□□ 0.36
PNKP-204ENST00000594661 TRIM65Q6PJ69 517 aa17.31■□□□□ 0.36
PNKP-204ENST00000594661 RSRC2Q7L4I2 434 aaKnown RBP17.31■□□□□ 0.36
PNKP-204ENST00000594661 SH3BP5LQ7L8J4 393 aa17.31■□□□□ 0.36
PNKP-204ENST00000594661 LARGE2Q8N3Y3 721 aa17.31■□□□□ 0.36
PNKP-204ENST00000594661 EHD4Q9H223 541 aa17.31■□□□□ 0.36
PNKP-204ENST00000594661 FAM237AA0A1B0GTK4 181 aa17.3■□□□□ 0.36
PNKP-204ENST00000594661 FAM196BA6NMK8 535 aa17.3■□□□□ 0.36
PNKP-204ENST00000594661 USP17L5A8MUK1 530 aa17.3■□□□□ 0.36
PNKP-204ENST00000594661 WNT7AO00755 349 aa17.3■□□□□ 0.36
PNKP-204ENST00000594661 RAD17O75943 681 aa17.3■□□□□ 0.36
PNKP-204ENST00000594661 SMC2O95347 1197 aa17.3■□□□□ 0.36
PNKP-204ENST00000594661 PARP1P09874 1014 aaKnown RBP17.3■□□□□ 0.36
PNKP-204ENST00000594661 GRIN1Q05586 938 aa17.3■□□□□ 0.36
PNKP-204ENST00000594661 LRRC47Q8N1G4 583 aaKnown RBP17.3■□□□□ 0.36
PNKP-204ENST00000594661 TACO1Q9BSH4 297 aaKnown RBP17.3■□□□□ 0.36
PNKP-204ENST00000594661 TDRD3Q9H7E2 651 aaKnown RBP17.3■□□□□ 0.36
PNKP-204ENST00000594661 GREB1LQ9C091 1923 aaPredicted RBP17.3■□□□□ 0.36
PNKP-204ENST00000594661 NLRP12P59046 1061 aa17.3■□□□□ 0.36
PNKP-204ENST00000594661 LONRF2Q1L5Z9 754 aa17.3■□□□□ 0.36
PNKP-204ENST00000594661 WWC2Q6AWC2 1192 aa17.3■□□□□ 0.36
PNKP-204ENST00000594661 PRMT6Q96LA8 375 aaPredicted RBP17.3■□□□□ 0.36
PNKP-204ENST00000594661 FBXO2Q9UK22 296 aaPredicted RBP17.3■□□□□ 0.36
PNKP-204ENST00000594661 KCNH3Q9ULD8 1083 aa17.3■□□□□ 0.36
PNKP-204ENST00000594661 CCDC151A5D8V7 595 aa17.29■□□□□ 0.36
PNKP-204ENST00000594661 PSMD14O00487 310 aa17.29■□□□□ 0.36
PNKP-204ENST00000594661 SPECC1Q5M775 1068 aa17.29■□□□□ 0.36
PNKP-204ENST00000594661 RSBN1LQ6PCB5 846 aaPredicted RBP17.29■□□□□ 0.36
PNKP-204ENST00000594661 RABGGTAQ92696 567 aa17.29■□□□□ 0.36
PNKP-204ENST00000594661 LZTS2Q9BRK4 669 aa17.29■□□□□ 0.36
PNKP-204ENST00000594661 SPZ1Q9BXG8 430 aa17.29■□□□□ 0.36
PNKP-204ENST00000594661 PDHBP11177 359 aa17.29■□□□□ 0.36
PNKP-204ENST00000594661 BRD3Q15059 726 aa17.29■□□□□ 0.36
PNKP-204ENST00000594661 LRRC31Q6UY01 552 aa17.29■□□□□ 0.36
PNKP-204ENST00000594661 ILDR2Q71H61 639 aa17.29■□□□□ 0.36
PNKP-204ENST00000594661 FAM107BQ9H098 131 aa17.29■□□□□ 0.36
PNKP-204ENST00000594661 DHX36Q9H2U1 1008 aaKnown RBP17.29■□□□□ 0.36
PNKP-204ENST00000594661 SH3GLB2Q9NR46 395 aa17.29■□□□□ 0.36
PNKP-204ENST00000594661 VPS18Q9P253 973 aa17.29■□□□□ 0.36
PNKP-204ENST00000594661 CEP131Q9UPN4 1083 aa17.29■□□□□ 0.36
PNKP-204ENST00000594661 TRIM75PA6NK02 468 aa17.28■□□□□ 0.36
PNKP-204ENST00000594661 MPHOSPH10O00566 681 aaKnown RBP17.28■□□□□ 0.36
PNKP-204ENST00000594661 PTPREP23469 700 aa17.28■□□□□ 0.36
PNKP-204ENST00000594661 SHROOM1Q2M3G4 852 aaPredicted RBP17.28■□□□□ 0.36
PNKP-204ENST00000594661 ARMCX5Q6P1M9 558 aa17.28■□□□□ 0.36
PNKP-204ENST00000594661 HEATR3Q7Z4Q2 680 aa17.28■□□□□ 0.36
PNKP-204ENST00000594661 HOMER1Q86YM7 354 aa17.28■□□□□ 0.36
PNKP-204ENST00000594661 CCDC125Q86Z20 511 aa17.28■□□□□ 0.36
PNKP-204ENST00000594661 ZSCAN29Q8IWY8 852 aaPredicted RBP17.28■□□□□ 0.36
PNKP-204ENST00000594661 BPIFA3Q9BQP9 254 aa17.28■□□□□ 0.36
PNKP-204ENST00000594661 PARD6BQ9BYG5 372 aa17.28■□□□□ 0.36
PNKP-204ENST00000594661 FRMPD2Q68DX3 1309 aaPredicted RBP17.27■□□□□ 0.36
PNKP-204ENST00000594661 STXBP3O00186 592 aa17.27■□□□□ 0.36
PNKP-204ENST00000594661 PPP1R12AO14974 1030 aaPredicted RBP17.27■□□□□ 0.36
PNKP-204ENST00000594661 FANCGO15287 622 aa17.27■□□□□ 0.36
PNKP-204ENST00000594661 NPM3O75607 178 aaKnown RBP17.27■□□□□ 0.36
PNKP-204ENST00000594661 TTLL1O95922 423 aa17.27■□□□□ 0.36
PNKP-204ENST00000594661 VIL1P09327 827 aaKnown RBP17.27■□□□□ 0.36
PNKP-204ENST00000594661 PNOCQ13519 176 aa17.27■□□□□ 0.36
PNKP-204ENST00000594661 LONRF3Q496Y0 759 aa17.27■□□□□ 0.36
PNKP-204ENST00000594661 ISM2Q6H9L7 571 aa17.27■□□□□ 0.36
PNKP-204ENST00000594661 PIK3AP1Q6ZUJ8 805 aa17.27■□□□□ 0.36
PNKP-204ENST00000594661 CNNM3Q8NE01 707 aa17.27■□□□□ 0.36
PNKP-204ENST00000594661 HNRNPLLQ8WVV9 542 aaKnown RBP17.27■□□□□ 0.36
PNKP-204ENST00000594661 GMLQ99445 158 aa17.27■□□□□ 0.36
PNKP-204ENST00000594661 PIM2Q9P1W9 311 aa17.27■□□□□ 0.36
PNKP-204ENST00000594661 PI4KBQ9UBF8 816 aa17.27■□□□□ 0.36
PNKP-204ENST00000594661 NRDCO43847 1150 aa17.27■□□□□ 0.35
PNKP-204ENST00000594661 PPFIA4O75335 1185 aa17.27■□□□□ 0.35
PNKP-204ENST00000594661 URI1O94763 535 aaPredicted RBP17.27■□□□□ 0.35
PNKP-204ENST00000594661 TGFB2P61812 414 aa17.27■□□□□ 0.35
PNKP-204ENST00000594661 BLIDQ8IZY5 108 aa17.27■□□□□ 0.35
PNKP-204ENST00000594661 MTFR1LQ9H019 292 aa17.27■□□□□ 0.35
PNKP-204ENST00000594661 EPC1Q9H2F5 836 aa17.27■□□□□ 0.35
PNKP-204ENST00000594661 BARHL2Q9NY43 387 aa17.27■□□□□ 0.35
PNKP-204ENST00000594661 ZBTB12Q9Y330 459 aaPredicted RBP17.27■□□□□ 0.35
PNKP-204ENST00000594661 SNHG28P0DPA3 235 aa17.26■□□□□ 0.35
PNKP-204ENST00000594661 CALML3P27482 149 aa17.26■□□□□ 0.35
PNKP-204ENST00000594661 RASGRP4Q8TDF6 673 aa17.26■□□□□ 0.35
PNKP-204ENST00000594661 UBA5Q9GZZ9 404 aa17.26■□□□□ 0.35
PNKP-204ENST00000594661 TUBE1Q9UJT0 475 aa17.26■□□□□ 0.35
PNKP-204ENST00000594661 PCDHA4Q9UN74 947 aa17.26■□□□□ 0.35
PNKP-204ENST00000594661 SRPRBQ9Y5M8 271 aaKnown RBP17.26■□□□□ 0.35
PNKP-204ENST00000594661 POLD1P28340 1107 aa17.26■□□□□ 0.35
PNKP-204ENST00000594661 USP8P40818 1118 aa17.26■□□□□ 0.35
PNKP-204ENST00000594661 MAP3K9P80192 1104 aa17.26■□□□□ 0.35
PNKP-204ENST00000594661 ZNF174Q15697 407 aa17.26■□□□□ 0.35
PNKP-204ENST00000594661 TTC38Q5R3I4 469 aa17.26■□□□□ 0.35
PNKP-204ENST00000594661 METTL16Q86W50 562 aaKnown RBP17.26■□□□□ 0.35
PNKP-204ENST00000594661 VAT1LQ9HCJ6 419 aa17.26■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 77.7 ms