RNA–Protein interactions for RNA: ENST00000593223.1

SMAD4-216, Transcript of SMAD family member 4, humanhuman

TSL 3

Gene SMAD4, Length 568 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-216ENST00000593223 HLA-DQA1Q5Y7H0 255 aa7.38□□□□□ -1.23
SMAD4-216ENST00000593223 EEF1DP3Q658K8 133 aa7.38□□□□□ -1.23
SMAD4-216ENST00000593223 RCSD1Q6JBY9 416 aa7.38□□□□□ -1.23
SMAD4-216ENST00000593223 CYP2R1Q6VVX0 501 aa7.38□□□□□ -1.23
SMAD4-216ENST00000593223 LILRA2Q8N149 483 aa7.38□□□□□ -1.23
SMAD4-216ENST00000593223 PTCHD1Q96NR3 888 aa7.38□□□□□ -1.23
SMAD4-216ENST00000593223 PFDN2Q9UHV9 154 aa7.38□□□□□ -1.23
SMAD4-216ENST00000593223 ERCC6Q03468 1493 aa7.37□□□□□ -1.23
SMAD4-216ENST00000593223 FADS2P1A8MWK0 482 aa7.37□□□□□ -1.23
SMAD4-216ENST00000593223 PAPLNO95428 1278 aa7.37□□□□□ -1.23
SMAD4-216ENST00000593223 SNRPB2P08579 225 aaKnown RBP7.37□□□□□ -1.23
SMAD4-216ENST00000593223 ECI1P42126 302 aa7.37□□□□□ -1.23
SMAD4-216ENST00000593223 PPP2R2AP63151 447 aa7.37□□□□□ -1.23
SMAD4-216ENST00000593223 HSP90AA2PQ14568 343 aaPredicted RBP7.37□□□□□ -1.23
SMAD4-216ENST00000593223 BMS1Q14692 1282 aaKnown RBP7.37□□□□□ -1.23
SMAD4-216ENST00000593223 ZSWIM9Q86XI8 627 aa7.37□□□□□ -1.23
SMAD4-216ENST00000593223 LRRC47Q8N1G4 583 aaKnown RBP7.37□□□□□ -1.23
SMAD4-216ENST00000593223 SGSM3Q96HU1 749 aa7.37□□□□□ -1.23
SMAD4-216ENST00000593223 NKX2-4Q9H2Z4 354 aa7.37□□□□□ -1.23
SMAD4-216ENST00000593223 ZSWIM4Q9H7M6 989 aa7.37□□□□□ -1.23
SMAD4-216ENST00000593223 CYP26B1Q9NR63 512 aa7.37□□□□□ -1.23
SMAD4-216ENST00000593223 SNTG2Q9NY99 539 aa7.37□□□□□ -1.23
SMAD4-216ENST00000593223 TAF6LQ9Y6J9 622 aa7.37□□□□□ -1.23
SMAD4-216ENST00000593223 A0A1W2PQU0 124 aa7.36□□□□□ -1.23
SMAD4-216ENST00000593223 WTIPA6NIX2 430 aaPredicted RBP7.36□□□□□ -1.23
SMAD4-216ENST00000593223 PSPNO60542 156 aa7.36□□□□□ -1.23
SMAD4-216ENST00000593223 ITGB5P18084 799 aa7.36□□□□□ -1.23
SMAD4-216ENST00000593223 PAMP19021 973 aa7.36□□□□□ -1.23
SMAD4-216ENST00000593223 HOXC12P31275 282 aa7.36□□□□□ -1.23
SMAD4-216ENST00000593223 SSRP1Q08945 709 aaKnown RBP7.36□□□□□ -1.23
SMAD4-216ENST00000593223 LAPTM5Q13571 262 aa7.36□□□□□ -1.23
SMAD4-216ENST00000593223 NFE2L2Q16236 605 aa7.36□□□□□ -1.23
SMAD4-216ENST00000593223 MCTP1Q6DN14 999 aa7.36□□□□□ -1.23
SMAD4-216ENST00000593223 SPATC1Q76KD6 591 aa7.36□□□□□ -1.23
SMAD4-216ENST00000593223 FAM168AQ92567 244 aa7.36□□□□□ -1.23
SMAD4-216ENST00000593223 MKL1Q969V6 931 aa7.36□□□□□ -1.23
SMAD4-216ENST00000593223 ASIC4Q96FT7 647 aa7.36□□□□□ -1.23
SMAD4-216ENST00000593223 LNPKQ9C0E8 428 aa7.36□□□□□ -1.23
SMAD4-216ENST00000593223 GPRC5CQ9NQ84 441 aa7.36□□□□□ -1.23
SMAD4-216ENST00000593223 NPHP3-ACAD11A0A0J9YXS1 232 aa7.35□□□□□ -1.23
SMAD4-216ENST00000593223 A0A1W2PQ45 241 aaPredicted RBP7.35□□□□□ -1.23
SMAD4-216ENST00000593223 A0A1W2PQY0 241 aa7.35□□□□□ -1.23
SMAD4-216ENST00000593223 FAM221BA6H8Z2 402 aa7.35□□□□□ -1.23
SMAD4-216ENST00000593223 NRDCO43847 1150 aa7.35□□□□□ -1.23
SMAD4-216ENST00000593223 RASA3Q14644 834 aa7.35□□□□□ -1.23
SMAD4-216ENST00000593223 NR0B2Q15466 257 aa7.35□□□□□ -1.23
SMAD4-216ENST00000593223 HSF5Q4G112 596 aaPredicted RBP7.35□□□□□ -1.23
SMAD4-216ENST00000593223 TIGD5Q53EQ6 642 aa7.35□□□□□ -1.23
SMAD4-216ENST00000593223 GALNT18Q6P9A2 607 aa7.35□□□□□ -1.23
SMAD4-216ENST00000593223 MPZL3Q6UWV2 235 aa7.35□□□□□ -1.23
SMAD4-216ENST00000593223 LRP10Q7Z4F1 713 aa7.35□□□□□ -1.23
SMAD4-216ENST00000593223 SIRT2Q8IXJ6 389 aa7.35□□□□□ -1.23
SMAD4-216ENST00000593223 TMEM52Q8NDY8 209 aa7.35□□□□□ -1.23
SMAD4-216ENST00000593223 ZNF669Q96BR6 464 aaPredicted RBP7.35□□□□□ -1.23
SMAD4-216ENST00000593223 CCDC140Q96MF4 163 aa7.35□□□□□ -1.23
SMAD4-216ENST00000593223 SPATA9Q9BWV2 254 aa7.35□□□□□ -1.23
SMAD4-216ENST00000593223 GOLGA2P5Q9HBQ8 144 aa7.35□□□□□ -1.23
SMAD4-216ENST00000593223 CLEC1BQ9P126 229 aa7.35□□□□□ -1.23
SMAD4-216ENST00000593223 TRBV23OR9-2A0A075B6M9 112 aa7.34□□□□□ -1.23
SMAD4-216ENST00000593223 THBDP07204 575 aa7.34□□□□□ -1.23
SMAD4-216ENST00000593223 GLI1P08151 1106 aa7.34□□□□□ -1.23
SMAD4-216ENST00000593223 GRIA2P42262 883 aa7.34□□□□□ -1.23
SMAD4-216ENST00000593223 SNX17Q15036 470 aa7.34□□□□□ -1.23
SMAD4-216ENST00000593223 CCDC144BQ3MJ40 725 aa7.34□□□□□ -1.23
SMAD4-216ENST00000593223 CPNE8Q86YQ8 564 aa7.34□□□□□ -1.23
SMAD4-216ENST00000593223 MRFAP1L1Q96HT8 127 aa7.34□□□□□ -1.23
SMAD4-216ENST00000593223 JMJD8Q96S16 334 aa7.34□□□□□ -1.23
SMAD4-216ENST00000593223 AARSD1Q9BTE6 412 aaKnown RBP7.34□□□□□ -1.23
SMAD4-216ENST00000593223 RNF32Q9H0A6 362 aa7.34□□□□□ -1.23
SMAD4-216ENST00000593223 CDK11AQ9UQ88 783 aaPredicted RBP7.34□□□□□ -1.23
SMAD4-216ENST00000593223 KDM2BQ8NHM5 1336 aa7.33□□□□□ -1.24
SMAD4-216ENST00000593223 TRAV20A0A0B4J274 112 aa7.33□□□□□ -1.24
SMAD4-216ENST00000593223 CPP00450 1065 aa7.33□□□□□ -1.24
SMAD4-216ENST00000593223 PLS3P13797 630 aa7.33□□□□□ -1.24
SMAD4-216ENST00000593223 L1CAMP32004 1257 aa7.33□□□□□ -1.24
SMAD4-216ENST00000593223 GALK1P51570 392 aa7.33□□□□□ -1.24
SMAD4-216ENST00000593223 SF1Q15637 639 aaKnown RBP7.33□□□□□ -1.24
SMAD4-216ENST00000593223 DPH6Q7L8W6 267 aa7.33□□□□□ -1.24
SMAD4-216ENST00000593223 SLCO6A1Q86UG4 719 aa7.33□□□□□ -1.24
SMAD4-216ENST00000593223 NUP43Q8NFH3 380 aa7.33□□□□□ -1.24
SMAD4-216ENST00000593223 COPS5Q92905 334 aa7.33□□□□□ -1.24
SMAD4-216ENST00000593223 IPO9Q96P70 1041 aaKnown RBP7.33□□□□□ -1.24
SMAD4-216ENST00000593223 DNAJC7Q99615 494 aa7.33□□□□□ -1.24
SMAD4-216ENST00000593223 CDC6Q99741 560 aa7.33□□□□□ -1.24
SMAD4-216ENST00000593223 IER2Q9BTL4 223 aa7.33□□□□□ -1.24
SMAD4-216ENST00000593223 SP110Q9HB58 689 aa7.33□□□□□ -1.24
SMAD4-216ENST00000593223 A0A1W2PQJ5 194 aa7.32□□□□□ -1.24
SMAD4-216ENST00000593223 PRODHO43272 600 aa7.32□□□□□ -1.24
SMAD4-216ENST00000593223 DIAPH1O60610 1272 aaKnown RBP7.32□□□□□ -1.24
SMAD4-216ENST00000593223 PRKCAP17252 672 aa7.32□□□□□ -1.24
SMAD4-216ENST00000593223 GFRA1P56159 465 aa7.32□□□□□ -1.24
SMAD4-216ENST00000593223 KCTD13Q8WZ19 329 aa7.32□□□□□ -1.24
SMAD4-216ENST00000593223 PLCD4Q9BRC7 762 aa7.32□□□□□ -1.24
SMAD4-216ENST00000593223 IMPACTQ9P2X3 320 aa7.32□□□□□ -1.24
SMAD4-216ENST00000593223 NOTOA8MTQ0 251 aa7.31□□□□□ -1.24
SMAD4-216ENST00000593223 MEFVO15553 781 aaPredicted RBP7.31□□□□□ -1.24
SMAD4-216ENST00000593223 PDE6BP35913 854 aa7.31□□□□□ -1.24
SMAD4-216ENST00000593223 ARL4AP40617 200 aa7.31□□□□□ -1.24
SMAD4-216ENST00000593223 CYP4F8P98187 520 aa7.31□□□□□ -1.24
SMAD4-216ENST00000593223 PRSS53Q2L4Q9 553 aa7.31□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms