RNA–Protein interactions for RNA: ENST00000593099.5

LIG3-216, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 4,664 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-216ENST00000593099 PTGDRQ13258 359 aa10.99□□□□□ -0.65
LIG3-216ENST00000593099 FAM83AQ86UY5 434 aa10.99□□□□□ -0.65
LIG3-216ENST00000593099 SCYL3Q8IZE3 742 aa10.99□□□□□ -0.65
LIG3-216ENST00000593099 DEPTORQ8TB45 409 aa10.99□□□□□ -0.65
LIG3-216ENST00000593099 GTF3C2Q8WUA4 911 aaPredicted RBP10.99□□□□□ -0.65
LIG3-216ENST00000593099 CPLX3Q8WVH0 158 aa10.99□□□□□ -0.65
LIG3-216ENST00000593099 FNBP1Q96RU3 617 aa10.99□□□□□ -0.65
LIG3-216ENST00000593099 ANO3Q9BYT9 981 aa10.99□□□□□ -0.65
LIG3-216ENST00000593099 ACAD9Q9H845 621 aa10.99□□□□□ -0.65
LIG3-216ENST00000593099 FRMD4BQ9Y2L6 1034 aa10.99□□□□□ -0.65
LIG3-216ENST00000593099 TRAF5O00463 557 aa10.99□□□□□ -0.65
LIG3-216ENST00000593099 TNPO2O14787 897 aaKnown RBP10.99□□□□□ -0.65
LIG3-216ENST00000593099 FCER1AP12319 257 aa10.99□□□□□ -0.65
LIG3-216ENST00000593099 CETN2P41208 172 aa10.99□□□□□ -0.65
LIG3-216ENST00000593099 USP28Q96RU2 1077 aa10.99□□□□□ -0.65
LIG3-216ENST00000593099 RMDN3Q96TC7 470 aa10.99□□□□□ -0.65
LIG3-216ENST00000593099 JPH2Q9BR39 696 aaPredicted RBP10.99□□□□□ -0.65
LIG3-216ENST00000593099 SH3GLB2Q9NR46 395 aa10.99□□□□□ -0.65
LIG3-216ENST00000593099 NDUFB10O96000 172 aa10.98□□□□□ -0.65
LIG3-216ENST00000593099 RASA1P20936 1047 aa10.98□□□□□ -0.65
LIG3-216ENST00000593099 UBE2SQ16763 222 aa10.98□□□□□ -0.65
LIG3-216ENST00000593099 MAP1SQ66K74 1059 aaPredicted RBP10.98□□□□□ -0.65
LIG3-216ENST00000593099 USP50Q70EL3 339 aaPredicted RBP10.98□□□□□ -0.65
LIG3-216ENST00000593099 DYMQ7RTS9 669 aa10.98□□□□□ -0.65
LIG3-216ENST00000593099 PGBD1Q96JS3 809 aa10.98□□□□□ -0.65
LIG3-216ENST00000593099 CPVLQ9H3G5 476 aa10.98□□□□□ -0.65
LIG3-216ENST00000593099 MMP1P03956 469 aa10.98□□□□□ -0.65
LIG3-216ENST00000593099 STX17P56962 302 aa10.98□□□□□ -0.65
LIG3-216ENST00000593099 QRICH1Q2TAL8 776 aa10.98□□□□□ -0.65
LIG3-216ENST00000593099 ANO6Q4KMQ2 910 aa10.98□□□□□ -0.65
LIG3-216ENST00000593099 SGMS1Q86VZ5 419 aa10.98□□□□□ -0.65
LIG3-216ENST00000593099 ZBTB8OSQ8IWT0 167 aa10.98□□□□□ -0.65
LIG3-216ENST00000593099 NSUN6Q8TEA1 469 aaKnown RBP10.98□□□□□ -0.65
LIG3-216ENST00000593099 IWS1Q96ST2 819 aa10.98□□□□□ -0.65
LIG3-216ENST00000593099 RTFDC1Q9BY42 306 aaPredicted RBP10.98□□□□□ -0.65
LIG3-216ENST00000593099 SUGCTQ9HAC7 445 aa10.98□□□□□ -0.65
LIG3-216ENST00000593099 KIF4AO95239 1232 aa10.98□□□□□ -0.65
LIG3-216ENST00000593099 STXBP2Q15833 593 aa10.98□□□□□ -0.65
LIG3-216ENST00000593099 TSGA10IPQ3SY00 556 aa10.98□□□□□ -0.65
LIG3-216ENST00000593099 ERO1BQ86YB8 467 aa10.98□□□□□ -0.65
LIG3-216ENST00000593099 PROM2Q8N271 834 aa10.98□□□□□ -0.65
LIG3-216ENST00000593099 TBC1D5Q92609 795 aa10.98□□□□□ -0.65
LIG3-216ENST00000593099 EPB41L4AQ9HCS5 686 aaPredicted RBP10.98□□□□□ -0.65
LIG3-216ENST00000593099 PARP4Q9UKK3 1724 aaKnown RBP10.98□□□□□ -0.65
LIG3-216ENST00000593099 MYCP01106 439 aaPredicted RBP10.97□□□□□ -0.65
LIG3-216ENST00000593099 CHGBP05060 677 aa10.97□□□□□ -0.65
LIG3-216ENST00000593099 PPP1R18Q6NYC8 613 aa10.97□□□□□ -0.65
LIG3-216ENST00000593099 MIS18BP1Q6P0N0 1132 aa10.97□□□□□ -0.65
LIG3-216ENST00000593099 DYDC1Q8WWB3 177 aa10.97□□□□□ -0.65
LIG3-216ENST00000593099 ZNF202O95125 648 aa10.97□□□□□ -0.65
LIG3-216ENST00000593099 RAD51AP2Q09MP3 1159 aa10.97□□□□□ -0.65
LIG3-216ENST00000593099 ARHGAP29Q52LW3 1261 aa10.97□□□□□ -0.65
LIG3-216ENST00000593099 RSPH3Q86UC2 560 aa10.97□□□□□ -0.65
LIG3-216ENST00000593099 FAM200AQ8TCP9 573 aa10.97□□□□□ -0.65
LIG3-216ENST00000593099 MMP19Q99542 508 aa10.97□□□□□ -0.65
LIG3-216ENST00000593099 TEX13BQ9BXU2 312 aa10.97□□□□□ -0.65
LIG3-216ENST00000593099 BRPF3Q9ULD4 1205 aa10.97□□□□□ -0.65
LIG3-216ENST00000593099 LONP1P36776 959 aaKnown RBP10.97□□□□□ -0.65
LIG3-216ENST00000593099 ZSCAN23Q3MJ62 389 aa10.97□□□□□ -0.65
LIG3-216ENST00000593099 SPDYE2Q495Y8 402 aa10.97□□□□□ -0.65
LIG3-216ENST00000593099 CCDC181Q5TID7 509 aa10.97□□□□□ -0.65
LIG3-216ENST00000593099 GPBP1Q86WP2 473 aa10.97□□□□□ -0.65
LIG3-216ENST00000593099 GNL3Q9BVP2 549 aaKnown RBP eCLIP10.97□□□□□ -0.65
LIG3-216ENST00000593099 H0YCG3 227 aa10.97□□□□□ -0.65
LIG3-216ENST00000593099 WNT10BO00744 389 aa10.97□□□□□ -0.65
LIG3-216ENST00000593099 CETN3O15182 167 aa10.97□□□□□ -0.65
LIG3-216ENST00000593099 VIL1P09327 827 aaKnown RBP10.97□□□□□ -0.65
LIG3-216ENST00000593099 EPB41P11171 864 aaKnown RBP10.97□□□□□ -0.65
LIG3-216ENST00000593099 CYP4A11Q02928 519 aa10.97□□□□□ -0.65
LIG3-216ENST00000593099 PFKFB3Q16875 520 aaPredicted RBP10.97□□□□□ -0.65
LIG3-216ENST00000593099 MFSD14CQ5VZR4 134 aa10.97□□□□□ -0.65
LIG3-216ENST00000593099 CEP135Q66GS9 1140 aa10.97□□□□□ -0.65
LIG3-216ENST00000593099 DNAJC25Q9H1X3 360 aa10.97□□□□□ -0.65
LIG3-216ENST00000593099 LARSQ9P2J5 1176 aaKnown RBP10.97□□□□□ -0.65
LIG3-216ENST00000593099 TMCO5BA8MYB1 307 aa10.96□□□□□ -0.65
LIG3-216ENST00000593099 POLGP54098 1239 aaPredicted RBP10.96□□□□□ -0.65
LIG3-216ENST00000593099 IGBP1P78318 339 aa10.96□□□□□ -0.65
LIG3-216ENST00000593099 TYRO3Q06418 890 aa10.96□□□□□ -0.65
LIG3-216ENST00000593099 BIRC3Q13489 604 aa10.96□□□□□ -0.65
LIG3-216ENST00000593099 CUL4AQ13619 759 aa10.96□□□□□ -0.65
LIG3-216ENST00000593099 FAM102BQ5T8I3 360 aa10.96□□□□□ -0.65
LIG3-216ENST00000593099 ADALQ6DHV7 355 aa10.96□□□□□ -0.65
LIG3-216ENST00000593099 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP10.96□□□□□ -0.65
LIG3-216ENST00000593099 MRPL44Q9H9J2 332 aaKnown RBP10.96□□□□□ -0.65
LIG3-216ENST00000593099 ZNF215Q9UL58 517 aaPredicted RBP10.96□□□□□ -0.65
LIG3-216ENST00000593099 CALUO43852 315 aaPredicted RBP10.96□□□□□ -0.65
LIG3-216ENST00000593099 CAP2P40123 477 aa10.96□□□□□ -0.65
LIG3-216ENST00000593099 GTF2A2P52657 109 aa10.96□□□□□ -0.65
LIG3-216ENST00000593099 UBASH3AP57075 661 aa10.96□□□□□ -0.65
LIG3-216ENST00000593099 ZNF543Q08ER8 600 aa10.96□□□□□ -0.65
LIG3-216ENST00000593099 NBPF12Q5TAG4 269 aaPredicted RBP10.96□□□□□ -0.65
LIG3-216ENST00000593099 LDHDQ86WU2 507 aa10.96□□□□□ -0.65
LIG3-216ENST00000593099 ADGRF4Q8IZF3 695 aa10.96□□□□□ -0.65
LIG3-216ENST00000593099 AOPEPQ8N6M6 819 aa10.96□□□□□ -0.65
LIG3-216ENST00000593099 PEAK1Q9H792 1746 aa10.96□□□□□ -0.65
LIG3-216ENST00000593099 KIF23Q02241 960 aaPredicted RBP10.96□□□□□ -0.66
LIG3-216ENST00000593099 NR5A1Q13285 461 aa10.96□□□□□ -0.66
LIG3-216ENST00000593099 HSP90AA4PQ58FG1 418 aa10.96□□□□□ -0.66
LIG3-216ENST00000593099 LRSAM1Q6UWE0 723 aa10.96□□□□□ -0.66
LIG3-216ENST00000593099 MB21D1Q8N884 522 aa10.96□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms